IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1767	 65.48	0	2014171..2015262	+	363	78062620	-	Bcep18194_B1770	-	outer membrane protein (porin)
1768	 70.81	+1	2015460..2016425	-	321	78062621	-	Bcep18194_B1771	-	zinc-containing alcohol dehydrogenase superfamily protein
1769	 69.44	0	2016472..2016723	-	83	78062622	-	Bcep18194_B1772	-	hypothetical protein
1770	 67.79	0	2016819..2017622	+	267	78062623	-	Bcep18194_B1773	-	AraC family transcriptional regulator
1771	 51.25	-2	2017925..2018404	-	159	78062624	-	Bcep18194_B1774	-	hypothetical protein
1772	 49.87	-2	2018422..2019612	-	396	78062625	-	Bcep18194_B1775	-	hypothetical protein
1773	 52.72	-2	2019816..2020109	-	97	78062626	-	Bcep18194_B1776	-	excisionase/Xis, DNA-binding
1774	 67.16	0	2020377..2021183	-	268	78062627	-	Bcep18194_B1777	-	2-dehydro-3-deoxyglucarate aldolase
1775	 68.41	0	2021196..2021999	-	267	78062628	-	Bcep18194_B1778	-	4-oxalocrotonate decarboxylase
1776	 62.09	-1	2022020..2022412	-	130	78062629	-	Bcep18194_B1779	-	5-carboxymethyl-2-hydroxymuconate isomerase
1777	 63.13	-1	2022446..2023294	-	282	78062630	-	Bcep18194_B1780	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD_Fe
1778	 66.53	0	2023407..2024870	-	487	78062631	-	Bcep18194_B1781	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
1779	 67.71	0	2024893..2025657	-	254	78062632	-	Bcep18194_B1782	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1780	 70.72	+1	2025654..2026343	-	229	78062633	-	Bcep18194_B1783	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1781	 64.74	0	2026469..2026936	+	155	78062634	-	Bcep18194_B1784	-	MarR family transcriptional regulator
1782	 71.37	+1	2026992..2028203	-	403	78062635	-	Bcep18194_B1785	-	NAD-dependent epimerase/dehydratase
1783	 64.24	0	2028460..2028747	+	95	78062636	-	Bcep18194_B1786	-	hypothetical protein
1784	 64.64	0	2028855..2029199	+	114	78062637	-	Bcep18194_B1787	-	hypothetical protein
1785	 68.14	0	2029620..2031515	+	631	78062638	-	Bcep18194_B1788	-	peptidoglycan synthetase FtsI
1786	 67.07	0	2031729..2032724	+	331	78062639	-	Bcep18194_B1789	-	periplasmic binding protein/LacI transcriptional regulator
1787	 69.15	0	2032744..2033508	+	254	78062640	-	Bcep18194_B1790	-	short chain dehydrogenase
1788	 68.35	0	2033587..2035305	-	572	78062641	-	Bcep18194_B1791	-	TrkA-N family protein
1789	 71.76	+1	2035514..2036926	-	470	78062642	-	Bcep18194_B1792	-	cytochrome c, class I
1790	 64.87	0	2036923..2038701	-	592	78062643	-	Bcep18194_B1793	-	glucose-methanol-choline oxidoreductase
1791	 68.06	0	2038701..2039489	-	262	78062644	-	Bcep18194_B1794	-	hypothetical protein
1792	 66.32	0	2040040..2040624	+	194	78062645	-	Bcep18194_B1795	-	RNA 2'-phosphotransferase-like protein
1793	 67.63	0	2040634..2041050	-	138	78062646	-	Bcep18194_B1796	-	hypothetical protein
1794	 70.25	0	2041382..2042497	+	371	78062647	-	Bcep18194_B1797	-	L-alanine dehydrogenase
1795	 68.64	0	2042552..2044321	-	589	78062648	-	Bcep18194_B1798	-	family X DNA polymerase IV
1796	 67.18	0	2044477..2044869	-	130	78062649	-	Bcep18194_B1799	-	TraR/DksA family transcriptional regulator
1797	 67.43	0	2045178..2046362	-	394	78062650	-	Bcep18194_B1800	-	glycosyl transferase, group 1
1798	 68.36	0	2046504..2047919	-	471	78062651	-	Bcep18194_B1801	-	sugar transferase
1799	 67.56	0	2047922..2048704	-	260	78062652	-	Bcep18194_B1802	-	CRP/FNR family transcriptional regulator
1800	 65.52	0	2049627..2050409	+	260	78062653	-	Bcep18194_B1803	-	cyclic nucleotide-binding domain-containing protein
1801	 58.33	-2	2050589..2050840	+	83	78062654	-	Bcep18194_B1804	-	acyl carrier protein
1802	 68.84	0	2050837..2052033	+	398	78062655	-	Bcep18194_B1805	-	Acyl-CoA dehydrogenase-like
1803	 66.97	0	2052030..2053004	+	324	78062656	-	Bcep18194_B1806	-	hypothetical protein
1804	 66.67	0	2053001..2054059	+	352	78062657	-	Bcep18194_B1807	-	hypothetical protein
1805	 71.60	+1	2054089..2056539	+	816	78062658	-	Bcep18194_B1808	-	Beta-mannosidase
1806	 66.31	0	2056586..2057977	-	463	78062659	-	Bcep18194_B1809	-	sigma-54 dependent trancsriptional regulator
1807	 66.59	0	2058670..2059920	-	416	78062660	-	Bcep18194_B1810	-	glycosyl transferase, group 1
1808	 65.16	0	2060098..2060760	+	220	78062661	-	Bcep18194_B1811	-	acyltransferase-like
1809	 67.17	0	2060757..2062337	+	526	78062662	-	Bcep18194_B1812	-	mannose-1-phosphate guanylyltransferase (GDP)
1810	 68.99	0	2062374..2063663	-	429	78062663	-	Bcep18194_B1813	-	hypothetical protein
1811	 67.23	0	2063660..2064718	-	352	78062664	-	Bcep18194_B1814	-	acyltransferase 3
1812	 63.71	0	2064827..2066179	-	450	78062665	-	Bcep18194_B1815	-	hypothetical protein
1813	 69.18	0	2066241..2068508	-	755	78062666	-	Bcep18194_B1816	-	protein-tyrosine kinase
1814	 69.48	0	2068564..2069736	-	390	78062667	-	Bcep18194_B1817	-	polysaccharide export protein
1815	 73.47	+1	2069900..2070325	+	141	78062668	-	Bcep18194_B1818	-	hypothetical protein
1816	 69.84	0	2070489..2072345	-	618	78062669	-	Bcep18194_B1819	-	hypothetical protein
1817	 65.39	0	2072838..2074094	+	418	78062670	-	Bcep18194_B1820	-	polysaccharide biosynthesis protein
1818	 68.91	0	2074170..2075237	+	355	78062671	-	Bcep18194_B1821	-	glycosyl transferase family protein
1819	 67.48	0	2075693..2077894	+	733	78062672	-	Bcep18194_B1822	-	Beta-glucosidase
1820	 60.87	-1	2078291..2082289	-	1332	78062673	-	Bcep18194_B1823	-	hypothetical protein
1821	 59.65	-2	2082318..2083244	-	308	78062674	-	Bcep18194_B1824	-	hypothetical protein
1822	 49.21	-2	2085402..2085974	-	190	78062675	-	Bcep18194_B1825	-	Rhs family protein
1823	 62.98	-1	2086776..2091065	-	1429	78062676	-	Bcep18194_B1826	-	Rhs family protein
1824	 62.85	-1	2091062..2092684	-	540	78062677	-	Bcep18194_B1827	-	Rhs element Vgr protein
1825	 59.53	-2	2092755..2094674	-	639	78062678	-	Bcep18194_B1828	-	hypothetical protein
1826	 67.70	0	2095146..2095724	-	192	78062679	-	Bcep18194_B1829	-	hypothetical protein
1827	 71.10	+1	2095852..2096709	+	285	78062680	-	Bcep18194_B1830	-	LysR family transcriptional regulator
1828	 60.98	-1	2096740..2097390	+	216	78062681	-	Bcep18194_B1831	-	hypothetical protein
1829	 65.99	0	2097573..2098160	+	195	78062682	-	Bcep18194_B1832	-	hypothetical protein
1830	 66.32	0	2098423..2098713	+	96	78062683	-	Bcep18194_B1833	-	histone-like nucleoid-structuring protein H-NS
1831	 64.46	0	2098769..2099719	-	316	78062684	-	Bcep18194_B1834	-	hypothetical protein
1832	 69.47	0	2099809..2101200	-	463	78062685	-	Bcep18194_B1835	-	OmpW family protein
1833	 66.28	0	2101205..2102500	-	431	78062686	-	Bcep18194_B1836	-	multidrug resistance efflux pump-like
1834	 68.26	0	2102513..2103514	-	333	78062687	-	Bcep18194_B1837	-	hypothetical protein
1835	 65.35	0	2103514..2105634	-	706	78062688	-	Bcep18194_B1838	-	antibiotic ABC transporter permease
1836	 62.90	-1	2105780..2105965	-	61	78062689	-	Bcep18194_B1839	-	hypothetical protein
1837	 60.92	-1	2106191..2106364	-	57	78062690	-	Bcep18194_B1840	-	hypothetical protein
1838	 64.34	0	2106646..2108061	+	471	78062691	-	Bcep18194_B1841	-	outer membrane efflux protein
1839	 65.03	0	2108550..2109587	+	345	78062692	amiE	Bcep18194_B1842	-	acylamide amidohydrolase
1840	 66.67	0	2109656..2110138	+	160	78062693	-	Bcep18194_B1843	-	AmiS/UreI transporter
1841	 70.95	+1	2110138..2110977	+	279	78062694	-	Bcep18194_B1844	-	ATPase AAA_5
1842	 71.60	+1	2110974..2112533	+	519	78062695	-	Bcep18194_B1845	-	nitric oxide reductase activation protein-like
1843	 66.05	0	2112566..2113708	+	380	78062696	-	Bcep18194_B1846	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
1844	 67.65	0	2113715..2114326	+	203	78062697	-	Bcep18194_B1847	-	response regulator receiver/ANTAR domain-containing protein
1845	 66.44	0	2114366..2114815	-	149	78062698	-	Bcep18194_B1848	-	putative transcriptional regulator
1846	 66.23	0	2115169..2116092	+	307	78062699	-	Bcep18194_B1849	-	Alpha/beta hydrolase
1847	 64.40	0	2116179..2117900	-	573	78062700	-	Bcep18194_B1850	-	gamma-glutamyltransferase 1
1848	 69.52	0	2118295..2118819	+	174	78062701	-	Bcep18194_B1851	-	hypothetical protein
1849	 70.38	0	2119021..2123568	+	1515	78062702	-	Bcep18194_B1852	-	DEAD/DEAH box helicase
1850	 72.55	+1	2123704..2124978	+	424	78062703	-	Bcep18194_B1853	-	putative amino acid transporter
1851	 64.65	0	2125141..2125437	-	98	78062704	-	Bcep18194_B1854	-	hypothetical protein
1852	 65.56	0	2125510..2125869	-	119	78062705	-	Bcep18194_B1855	-	hypothetical protein
1853	 71.23	+1	2126000..2126986	-	328	78062706	-	Bcep18194_B1856	-	LysR family transcriptional regulator
1854	 65.99	0	2127064..2127801	-	245	78062707	-	Bcep18194_B1857	-	XRE family transcriptional regulator
1855	 68.58	0	2127922..2128497	+	191	78062708	-	Bcep18194_B1858	-	hypothetical protein
1856	 66.95	0	2128771..2129478	+	235	78062709	-	Bcep18194_B1859	-	intradiol ring-cleavage dioxygenase
1857	 68.52	0	2129482..2130075	+	197	78062710	-	Bcep18194_B1860	-	protocatechuate 3,4-dioxygenase
1858	 68.08	0	2130535..2131386	-	283	78062711	-	Bcep18194_B1861	-	AraC family transcriptional regulator
1859	 67.18	0	2131457..2132236	+	259	78062712	-	Bcep18194_B1862	-	Alpha/beta hydrolase
1860	 67.75	0	2132275..2133102	-	275	78062713	-	Bcep18194_B1863	-	D-aminopeptidase DppA
1861	 70.45	0	2133099..2134181	-	360	78062714	-	Bcep18194_B1864	-	aminopeptidase DmpA
1862	 68.34	0	2134181..2135074	-	297	78062715	-	Bcep18194_B1865	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1863	 66.23	0	2135082..2136002	-	306	78062716	-	Bcep18194_B1866	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1864	 64.75	0	2136082..2137644	-	520	78062717	-	Bcep18194_B1867	-	dipeptide/oligopeptide/nickel ABC periplasmic ligand-binding protein
1865	 68.98	0	2137740..2139641	-	633	78062718	-	Bcep18194_B1868	-	dipeptide/oligopeptide/nickel ABC transporter ATPase
1866	 69.44	0	2139671..2140678	-	335	78062719	-	Bcep18194_B1869	-	peptidase T2, asparaginase 2
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.