IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1725	 71.70	+1	1966170..1967699	+	509	78062578	-	Bcep18194_B1728	-	RND efflux system outer membrane lipoprotein
1726	 67.10	0	1967728..1968423	+	231	78062579	-	Bcep18194_B1729	-	two component heavy metal response transcriptional regulator
1727	 68.47	0	1968420..1969859	+	479	78062580	-	Bcep18194_B1730	-	heavy metal sensor signal transduction histidine kinase
1728	 71.26	+1	1969964..1970551	+	195	78062581	-	Bcep18194_B1731	-	lysine exporter protein LysE/YggA
1729	 69.15	0	1970562..1971407	-	281	78062582	-	Bcep18194_B1732	-	AraC family transcriptional regulator
1730	 67.55	0	1971733..1972527	+	264	78062583	-	Bcep18194_B1733	-	Short-chain dehydrogenase/reductase SDR
1731	 65.16	0	1972555..1972953	-	132	78062584	-	Bcep18194_B1734	-	hypothetical protein
1732	 69.28	0	1973151..1974221	-	356	78062585	-	Bcep18194_B1735	-	hypothetical protein
1733	 69.73	0	1974348..1975457	-	369	78062586	-	Bcep18194_B1736	-	NADH-flavin oxidoreductase/NADH oxidase
1734	 68.56	0	1975599..1976285	-	228	78062587	-	Bcep18194_B1737	-	ThiJ/PfpI family protein
1735	 67.38	0	1976755..1977591	-	278	78062588	-	Bcep18194_B1738	-	short chain dehydrogenase
1736	 72.88	+1	1977656..1978573	-	305	78062589	-	Bcep18194_B1739	-	LysR family transcriptional regulator
1737	 71.45	+1	1978806..1980290	+	494	78062590	-	Bcep18194_B1740	-	GntR family transcriptional regulator
1738	 65.30	0	1980385..1980822	+	145	78062591	-	Bcep18194_B1741	-	alkylhydroperoxidase AhpD core
1739	 70.66	+1	1980833..1981258	+	141	78062592	-	Bcep18194_B1742	-	hypothetical protein
1740	 68.16	0	1981477..1982211	+	244	78062593	-	Bcep18194_B1743	-	TetR family transcriptional regulator
1741	 71.53	+1	1982208..1983173	+	321	78062594	-	Bcep18194_B1744	-	HlyD family secretion protein
1742	 70.28	0	1983170..1984138	+	322	78062595	-	Bcep18194_B1745	-	ABC transporter, ATPase subunit
1743	 67.01	0	1984135..1985289	+	384	78062596	-	Bcep18194_B1746	-	ABC efflux pump, inner membrane subunit
1744	 70.96	+1	1985300..1986790	+	496	78062597	-	Bcep18194_B1747	-	RND efflux system outer membrane lipoprotein
1745	 64.53	0	1986925..1988139	-	404	78062598	-	Bcep18194_B1748	-	outer membrane protein (porin)
1746	 70.61	+1	1988630..1989694	-	354	78062599	-	Bcep18194_B1749	-	farnesyl-diphosphate farnesyltransferase
1747	 67.28	0	1990069..1991214	+	381	78062600	-	Bcep18194_B1750	-	glycerophosphoryl diester phosphodiesterase
1748	 70.12	0	1991272..1992981	-	569	78062601	-	Bcep18194_B1751	-	rhodanese-like protein
1749	 67.02	0	1993013..1993579	-	188	78062602	-	Bcep18194_B1752	-	double-stranded beta helix superfamily protein
1750	 70.04	0	1993654..1994571	+	305	78062603	-	Bcep18194_B1753	-	LysR family transcriptional regulator
1751	 72.45	+1	1994633..1995997	-	454	78062604	-	Bcep18194_B1754	-	Acyl-CoA dehydrogenase
1752	 70.26	0	1996304..1997389	+	361	78062605	-	Bcep18194_B1755	-	alkanesulfonate monooxygenase
1753	 68.33	0	1997423..1998262	+	279	78062606	-	Bcep18194_B1756	-	hypothetical protein
1754	 66.95	0	1998295..1999335	+	346	78062607	-	Bcep18194_B1757	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
1755	 70.05	0	1999340..2000434	+	364	78062608	-	Bcep18194_B1758	-	nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein
1756	 71.01	+1	2000428..2001255	+	275	78062609	-	Bcep18194_B1759	-	nitrate/sulfonate/bicarbonate ABC transporter ATPase
1757	 74.77	+2	2001306..2002490	+	394	78062610	-	Bcep18194_B1760	-	hypothetical protein
1758	 70.44	0	2002528..2003481	+	317	78062611	-	Bcep18194_B1761	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1759	 67.01	0	2003570..2004436	+	288	78062612	-	Bcep18194_B1762	-	uncharacterized Fe-S protein
1760	 69.67	0	2004515..2005948	-	477	78062613	-	Bcep18194_B1763	-	periplasmic sensor signal transduction histidine kinase
1761	 66.52	0	2006115..2006795	-	226	78062614	-	Bcep18194_B1764	-	two component transcriptional regulator
1762	 69.48	0	2006920..2008161	-	413	78062615	-	Bcep18194_B1765	-	Bcr/CflA subfamily drug resistance transporter
1763	 69.76	0	2008264..2009751	+	495	78062616	-	Bcep18194_B1766	-	GntR family transcriptional regulator
1764	 62.85	-1	2009969..2011069	+	366	78062617	-	Bcep18194_B1767	-	ABC Fe3+ siderophore transporter, periplasmic ligand binding protein
1765	 66.95	0	2011170..2012942	+	590	78062618	-	Bcep18194_B1768	-	ABC Fe3+ siderophore transporter, inner membrane subunit
1766	 68.73	0	2012935..2014002	+	355	78062619	-	Bcep18194_B1769	-	ABC transporter, ATPase subunit
1767	 65.48	0	2014171..2015262	+	363	78062620	-	Bcep18194_B1770	-	outer membrane protein (porin)
1768	 70.81	+1	2015460..2016425	-	321	78062621	-	Bcep18194_B1771	-	zinc-containing alcohol dehydrogenase superfamily protein
1769	 69.44	0	2016472..2016723	-	83	78062622	-	Bcep18194_B1772	-	hypothetical protein
1770	 67.79	0	2016819..2017622	+	267	78062623	-	Bcep18194_B1773	-	AraC family transcriptional regulator
1771	 51.25	-2	2017925..2018404	-	159	78062624	-	Bcep18194_B1774	-	hypothetical protein
1772	 49.87	-2	2018422..2019612	-	396	78062625	-	Bcep18194_B1775	-	hypothetical protein
1773	 52.72	-2	2019816..2020109	-	97	78062626	-	Bcep18194_B1776	-	excisionase/Xis, DNA-binding
1774	 67.16	0	2020377..2021183	-	268	78062627	-	Bcep18194_B1777	-	2-dehydro-3-deoxyglucarate aldolase
1775	 68.41	0	2021196..2021999	-	267	78062628	-	Bcep18194_B1778	-	4-oxalocrotonate decarboxylase
1776	 62.09	-1	2022020..2022412	-	130	78062629	-	Bcep18194_B1779	-	5-carboxymethyl-2-hydroxymuconate isomerase
1777	 63.13	-1	2022446..2023294	-	282	78062630	-	Bcep18194_B1780	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD_Fe
1778	 66.53	0	2023407..2024870	-	487	78062631	-	Bcep18194_B1781	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
1779	 67.71	0	2024893..2025657	-	254	78062632	-	Bcep18194_B1782	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1780	 70.72	+1	2025654..2026343	-	229	78062633	-	Bcep18194_B1783	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1781	 64.74	0	2026469..2026936	+	155	78062634	-	Bcep18194_B1784	-	MarR family transcriptional regulator
1782	 71.37	+1	2026992..2028203	-	403	78062635	-	Bcep18194_B1785	-	NAD-dependent epimerase/dehydratase
1783	 64.24	0	2028460..2028747	+	95	78062636	-	Bcep18194_B1786	-	hypothetical protein
1784	 64.64	0	2028855..2029199	+	114	78062637	-	Bcep18194_B1787	-	hypothetical protein
1785	 68.14	0	2029620..2031515	+	631	78062638	-	Bcep18194_B1788	-	peptidoglycan synthetase FtsI
1786	 67.07	0	2031729..2032724	+	331	78062639	-	Bcep18194_B1789	-	periplasmic binding protein/LacI transcriptional regulator
1787	 69.15	0	2032744..2033508	+	254	78062640	-	Bcep18194_B1790	-	short chain dehydrogenase
1788	 68.35	0	2033587..2035305	-	572	78062641	-	Bcep18194_B1791	-	TrkA-N family protein
1789	 71.76	+1	2035514..2036926	-	470	78062642	-	Bcep18194_B1792	-	cytochrome c, class I
1790	 64.87	0	2036923..2038701	-	592	78062643	-	Bcep18194_B1793	-	glucose-methanol-choline oxidoreductase
1791	 68.06	0	2038701..2039489	-	262	78062644	-	Bcep18194_B1794	-	hypothetical protein
1792	 66.32	0	2040040..2040624	+	194	78062645	-	Bcep18194_B1795	-	RNA 2'-phosphotransferase-like protein
1793	 67.63	0	2040634..2041050	-	138	78062646	-	Bcep18194_B1796	-	hypothetical protein
1794	 70.25	0	2041382..2042497	+	371	78062647	-	Bcep18194_B1797	-	L-alanine dehydrogenase
1795	 68.64	0	2042552..2044321	-	589	78062648	-	Bcep18194_B1798	-	family X DNA polymerase IV
1796	 67.18	0	2044477..2044869	-	130	78062649	-	Bcep18194_B1799	-	TraR/DksA family transcriptional regulator
1797	 67.43	0	2045178..2046362	-	394	78062650	-	Bcep18194_B1800	-	glycosyl transferase, group 1
1798	 68.36	0	2046504..2047919	-	471	78062651	-	Bcep18194_B1801	-	sugar transferase
1799	 67.56	0	2047922..2048704	-	260	78062652	-	Bcep18194_B1802	-	CRP/FNR family transcriptional regulator
1800	 65.52	0	2049627..2050409	+	260	78062653	-	Bcep18194_B1803	-	cyclic nucleotide-binding domain-containing protein
1801	 58.33	-2	2050589..2050840	+	83	78062654	-	Bcep18194_B1804	-	acyl carrier protein
1802	 68.84	0	2050837..2052033	+	398	78062655	-	Bcep18194_B1805	-	Acyl-CoA dehydrogenase-like
1803	 66.97	0	2052030..2053004	+	324	78062656	-	Bcep18194_B1806	-	hypothetical protein
1804	 66.67	0	2053001..2054059	+	352	78062657	-	Bcep18194_B1807	-	hypothetical protein
1805	 71.60	+1	2054089..2056539	+	816	78062658	-	Bcep18194_B1808	-	Beta-mannosidase
1806	 66.31	0	2056586..2057977	-	463	78062659	-	Bcep18194_B1809	-	sigma-54 dependent trancsriptional regulator
1807	 66.59	0	2058670..2059920	-	416	78062660	-	Bcep18194_B1810	-	glycosyl transferase, group 1
1808	 65.16	0	2060098..2060760	+	220	78062661	-	Bcep18194_B1811	-	acyltransferase-like
1809	 67.17	0	2060757..2062337	+	526	78062662	-	Bcep18194_B1812	-	mannose-1-phosphate guanylyltransferase (GDP)
1810	 68.99	0	2062374..2063663	-	429	78062663	-	Bcep18194_B1813	-	hypothetical protein
1811	 67.23	0	2063660..2064718	-	352	78062664	-	Bcep18194_B1814	-	acyltransferase 3
1812	 63.71	0	2064827..2066179	-	450	78062665	-	Bcep18194_B1815	-	hypothetical protein
1813	 69.18	0	2066241..2068508	-	755	78062666	-	Bcep18194_B1816	-	protein-tyrosine kinase
1814	 69.48	0	2068564..2069736	-	390	78062667	-	Bcep18194_B1817	-	polysaccharide export protein
1815	 73.47	+1	2069900..2070325	+	141	78062668	-	Bcep18194_B1818	-	hypothetical protein
1816	 69.84	0	2070489..2072345	-	618	78062669	-	Bcep18194_B1819	-	hypothetical protein
1817	 65.39	0	2072838..2074094	+	418	78062670	-	Bcep18194_B1820	-	polysaccharide biosynthesis protein
1818	 68.91	0	2074170..2075237	+	355	78062671	-	Bcep18194_B1821	-	glycosyl transferase family protein
1819	 67.48	0	2075693..2077894	+	733	78062672	-	Bcep18194_B1822	-	Beta-glucosidase
1820	 60.87	-1	2078291..2082289	-	1332	78062673	-	Bcep18194_B1823	-	hypothetical protein
1821	 59.65	-2	2082318..2083244	-	308	78062674	-	Bcep18194_B1824	-	hypothetical protein
1822	 49.21	-2	2085402..2085974	-	190	78062675	-	Bcep18194_B1825	-	Rhs family protein
1823	 62.98	-1	2086776..2091065	-	1429	78062676	-	Bcep18194_B1826	-	Rhs family protein
1824	 62.85	-1	2091062..2092684	-	540	78062677	-	Bcep18194_B1827	-	Rhs element Vgr protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.