IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1650	 65.93	0	1881457..1881861	-	134	78062503	-	Bcep18194_B1653	-	hypothetical protein
1651	 66.17	0	1882208..1882810	+	200	78062504	-	Bcep18194_B1654	-	hypothetical protein
1652	 71.48	+1	1882834..1883622	+	262	78062505	-	Bcep18194_B1655	-	metal-binding integral membrane protein
1653	 73.94	+1	1883631..1884524	+	297	78062506	-	Bcep18194_B1656	-	hypothetical protein
1654	 63.30	-1	1884657..1884983	-	108	78062507	-	Bcep18194_B1657	-	hypothetical protein
1655	 73.02	+1	1885207..1886088	-	293	78062508	-	Bcep18194_B1658	-	hypothetical protein
1656	 69.33	0	1886168..1888756	-	862	78062509	-	Bcep18194_B1659	-	peptidoglycan glycosyltransferase
1657	 66.96	0	1888931..1889938	-	335	78062510	-	Bcep18194_B1660	-	proline racemase
1658	 66.13	0	1890004..1891125	-	373	78062511	-	Bcep18194_B1661	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
1659	 68.43	0	1891247..1891984	-	245	78062512	-	Bcep18194_B1662	-	GntR family transcriptional regulator
1660	 72.86	+1	1892249..1893184	+	311	78062513	-	Bcep18194_B1663	-	ornithine cyclodeaminase
1661	 67.65	0	1893353..1893757	+	134	78062514	-	Bcep18194_B1664	-	response regulator receiver domain-containing protein
1662	 66.03	0	1893774..1894553	+	259	78062515	-	Bcep18194_B1665	-	Crp/FNR family transcriptional regulator
1663	 72.73	+1	1894596..1894991	-	131	78062516	-	Bcep18194_B1666	-	hypothetical protein
1664	 62.50	-1	1895102..1895341	-	79	78062517	-	Bcep18194_B1667	-	hypothetical protein
1665	 66.67	0	1895364..1895648	-	94	78062518	-	Bcep18194_B1668	-	hypothetical protein
1666	 69.92	0	1895787..1896185	-	132	78062519	-	Bcep18194_B1669	-	hypothetical protein
1667	 68.25	0	1896349..1897551	-	400	78062520	-	Bcep18194_B1670	-	aromatic amino acid aminotransferase
1668	 64.36	0	1897597..1898982	-	461	78062521	-	Bcep18194_B1671	-	amino acid transporter
1669	 63.29	-1	1899302..1899775	+	157	78062522	-	Bcep18194_B1672	-	AsnC family transcriptional regulator
1670	 70.94	+1	1899806..1900717	-	303	78062523	-	Bcep18194_B1673	-	hypothetical protein
1671	 67.03	0	1901067..1902740	+	557	78062524	-	Bcep18194_B1674	-	phospholipase C
1672	 68.28	0	1902835..1904256	+	473	78062525	-	Bcep18194_B1675	-	di-haem cytochrome c peroxidase
1673	 69.13	0	1904286..1905017	-	243	78062526	-	Bcep18194_B1676	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
1674	 66.59	0	1905134..1906456	-	440	78062527	-	Bcep18194_B1677	-	hypothetical protein
1675	 70.86	+1	1906663..1907997	-	444	78062528	-	Bcep18194_B1678	-	Cl- channel, voltage gated
1676	 66.75	0	1908623..1909765	+	380	78062529	-	Bcep18194_B1679	-	outer membrane protein (porin)
1677	 66.67	0	1909982..1910284	+	100	78062530	-	Bcep18194_B1680	-	hypothetical protein
1678	 67.41	0	1910402..1911349	-	315	78062531	-	Bcep18194_B1681	-	LysR family transcriptional regulator
1679	 69.09	0	1911550..1913733	+	727	78062532	-	Bcep18194_B1682	-	fusaric acid resistance protein
1680	 63.00	-1	1913811..1914083	+	90	78062533	-	Bcep18194_B1683	-	hypothetical protein
1681	 70.90	+1	1914228..1915337	-	369	78062534	-	Bcep18194_B1684	-	aminopeptidase DmpA
1682	 67.16	0	1915409..1916815	-	468	78062535	-	Bcep18194_B1685	-	amino acid transporter
1683	 67.92	0	1916956..1917756	+	266	78062536	-	Bcep18194_B1686	-	LuxR family transcriptional regulator
1684	 67.19	0	1917895..1918278	+	127	78062537	-	Bcep18194_B1687	-	hypothetical protein
1685	 62.75	-1	1918356..1918661	-	101	78062538	-	Bcep18194_B1688	-	hypothetical protein
1686	 69.75	0	1918875..1920173	-	432	78062539	-	Bcep18194_B1689	-	cytochrome P450
1687	 68.04	0	1920237..1921328	+	363	78062540	-	Bcep18194_B1690	-	AraC family transcriptional regulator
1688	 68.11	0	1921475..1922305	+	276	78062541	-	Bcep18194_B1691	-	GntR family transcriptional regulator
1689	 67.39	0	1922319..1923563	-	414	78062542	-	Bcep18194_B1692	-	Beta-lactamase
1690	 68.81	0	1923860..1924744	+	294	78062543	-	Bcep18194_B1693	-	LysR family transcriptional regulator
1691	 71.67	+1	1924840..1925859	+	339	78062544	-	Bcep18194_B1694	-	auxin efflux carrier
1692	 71.58	+1	1925989..1926924	+	311	78062545	-	Bcep18194_B1695	-	hypothetical protein
1693	 63.20	-1	1927221..1927595	+	124	78062546	-	Bcep18194_B1696	-	hypothetical protein
1694	 68.05	0	1927752..1929269	-	505	78062547	-	Bcep18194_B1697	-	methylmalonate-semialdehyde dehydrogenase [acylating]
1695	 66.52	0	1929319..1930674	-	451	78062548	-	Bcep18194_B1698	-	beta alanine--pyruvate transaminase
1696	 63.84	0	1930705..1931730	+	341	78062549	-	Bcep18194_B1699	-	LysR family transcriptional regulator
1697	 68.60	0	1931933..1933171	-	412	78062550	-	Bcep18194_B1700	-	hypothetical protein
1698	 67.26	0	1933168..1933503	-	111	78062551	-	Bcep18194_B1701	-	hypothetical protein
1699	 70.06	0	1933541..1934011	-	156	78062552	-	Bcep18194_B1702	-	MarR family transcriptional regulator
1700	 71.34	+1	1934182..1934673	+	163	78062553	-	Bcep18194_B1703	-	hypothetical protein
1701	 66.49	0	1934773..1935924	-	383	78062554	-	Bcep18194_B1704	-	epoxide hydrolase-like
1702	 68.02	0	1936001..1936960	-	319	78062555	-	Bcep18194_B1705	-	transcriptional regulator
1703	 69.16	0	1937096..1937896	+	266	78062556	-	Bcep18194_B1706	-	Short-chain dehydrogenase/reductase SDR
1704	 70.09	0	1938237..1940045	+	602	78062557	-	Bcep18194_B1707	-	diguanylate cyclase
1705	 64.31	0	1940148..1940444	+	98	78062558	-	Bcep18194_B1708	-	hypothetical protein
1706	 68.53	0	1940471..1941811	-	446	78062559	-	Bcep18194_B1709	-	major facilitator transporter
1707	 68.30	0	1941899..1943248	-	449	78062560	-	Bcep18194_B1710	-	major facilitator transporter
1708	 65.31	0	1943428..1944387	-	319	78062561	-	Bcep18194_B1711	-	Beta-lactamase-like
1709	 74.06	+1	1944565..1946214	+	549	78062562	-	Bcep18194_B1712	-	IclR family transcriptional regulator
1710	 62.73	-1	1947027..1947509	-	160	78062563	-	Bcep18194_B1713	-	AsnC family transcriptional regulator
1711	 70.01	0	1947717..1948433	+	238	78062564	-	Bcep18194_B1714	-	lysine exporter protein LysE/YggA
1712	 67.35	0	1948556..1949731	+	391	78062565	-	Bcep18194_B1715	-	voltage-gated potassium channel
1713	 69.68	0	1949801..1950232	+	143	78062566	-	Bcep18194_B1716	-	membrane protein-like
1714	 68.10	0	1950284..1951750	-	488	78062567	-	Bcep18194_B1717	-	major facilitator transporter
1715	 69.01	0	1951791..1952813	-	340	78062568	-	Bcep18194_B1718	-	hypothetical protein
1716	 67.84	0	1952873..1954150	-	425	78062569	-	Bcep18194_B1719	-	L-carnitine dehydratase/bile acid-inducible protein F
1717	 67.33	0	1954169..1954918	-	249	78062570	-	Bcep18194_B1720	-	IclR family transcriptional regulator
1718	 71.80	+1	1955141..1956055	+	304	78062571	-	Bcep18194_B1721	-	Citryl-CoA lyase
1719	 65.64	0	1956215..1957288	+	357	78062572	-	Bcep18194_B1722	-	outer membrane protein (porin)
1720	 68.64	0	1957335..1958804	+	489	78062573	-	Bcep18194_B1723	-	hypothetical protein
1721	 66.67	0	1958872..1960542	-	556	78062574	-	Bcep18194_B1724	-	acyl-CoA synthetase
1722	 68.78	0	1960711..1961466	+	251	78062575	-	Bcep18194_B1725	-	cyclic nucleotide-binding domain-containing protein
1723	 66.82	0	1961731..1964898	+	1055	78062576	-	Bcep18194_B1726	-	acriflavin resistance protein
1724	 70.49	0	1964935..1966164	+	409	78062577	-	Bcep18194_B1727	-	HlyD family secretion protein
1725	 71.70	+1	1966170..1967699	+	509	78062578	-	Bcep18194_B1728	-	RND efflux system outer membrane lipoprotein
1726	 67.10	0	1967728..1968423	+	231	78062579	-	Bcep18194_B1729	-	two component heavy metal response transcriptional regulator
1727	 68.47	0	1968420..1969859	+	479	78062580	-	Bcep18194_B1730	-	heavy metal sensor signal transduction histidine kinase
1728	 71.26	+1	1969964..1970551	+	195	78062581	-	Bcep18194_B1731	-	lysine exporter protein LysE/YggA
1729	 69.15	0	1970562..1971407	-	281	78062582	-	Bcep18194_B1732	-	AraC family transcriptional regulator
1730	 67.55	0	1971733..1972527	+	264	78062583	-	Bcep18194_B1733	-	Short-chain dehydrogenase/reductase SDR
1731	 65.16	0	1972555..1972953	-	132	78062584	-	Bcep18194_B1734	-	hypothetical protein
1732	 69.28	0	1973151..1974221	-	356	78062585	-	Bcep18194_B1735	-	hypothetical protein
1733	 69.73	0	1974348..1975457	-	369	78062586	-	Bcep18194_B1736	-	NADH-flavin oxidoreductase/NADH oxidase
1734	 68.56	0	1975599..1976285	-	228	78062587	-	Bcep18194_B1737	-	ThiJ/PfpI family protein
1735	 67.38	0	1976755..1977591	-	278	78062588	-	Bcep18194_B1738	-	short chain dehydrogenase
1736	 72.88	+1	1977656..1978573	-	305	78062589	-	Bcep18194_B1739	-	LysR family transcriptional regulator
1737	 71.45	+1	1978806..1980290	+	494	78062590	-	Bcep18194_B1740	-	GntR family transcriptional regulator
1738	 65.30	0	1980385..1980822	+	145	78062591	-	Bcep18194_B1741	-	alkylhydroperoxidase AhpD core
1739	 70.66	+1	1980833..1981258	+	141	78062592	-	Bcep18194_B1742	-	hypothetical protein
1740	 68.16	0	1981477..1982211	+	244	78062593	-	Bcep18194_B1743	-	TetR family transcriptional regulator
1741	 71.53	+1	1982208..1983173	+	321	78062594	-	Bcep18194_B1744	-	HlyD family secretion protein
1742	 70.28	0	1983170..1984138	+	322	78062595	-	Bcep18194_B1745	-	ABC transporter, ATPase subunit
1743	 67.01	0	1984135..1985289	+	384	78062596	-	Bcep18194_B1746	-	ABC efflux pump, inner membrane subunit
1744	 70.96	+1	1985300..1986790	+	496	78062597	-	Bcep18194_B1747	-	RND efflux system outer membrane lipoprotein
1745	 64.53	0	1986925..1988139	-	404	78062598	-	Bcep18194_B1748	-	outer membrane protein (porin)
1746	 70.61	+1	1988630..1989694	-	354	78062599	-	Bcep18194_B1749	-	farnesyl-diphosphate farnesyltransferase
1747	 67.28	0	1990069..1991214	+	381	78062600	-	Bcep18194_B1750	-	glycerophosphoryl diester phosphodiesterase
1748	 70.12	0	1991272..1992981	-	569	78062601	-	Bcep18194_B1751	-	rhodanese-like protein
1749	 67.02	0	1993013..1993579	-	188	78062602	-	Bcep18194_B1752	-	double-stranded beta helix superfamily protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.