IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1621	 69.65	0	1848195..1849466	+	423	78062474	-	Bcep18194_B1624	-	NADH-flavin oxidoreductase/NADH oxidase
1622	 66.67	0	1849509..1850636	-	375	78062475	-	Bcep18194_B1625	-	4-hydroxyphenylpyruvate dioxygenase
1623	 66.21	0	1850993..1852300	+	435	78062476	-	Bcep18194_B1626	-	shikimate transporter
1624	 67.26	0	1852482..1853819	+	445	78062477	-	Bcep18194_B1627	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1625	 66.50	0	1853906..1854517	-	203	78062478	-	Bcep18194_B1628	-	hypothetical protein
1626	 68.35	0	1854812..1855582	+	256	78062479	-	Bcep18194_B1629	-	IclR family transcriptional regulator
1627	 70.19	0	1855688..1857988	-	766	78062480	-	Bcep18194_B1630	-	Rad3-related DNA helicases-like
1628	 70.09	0	1857985..1859679	-	564	78062481	-	Bcep18194_B1631	-	hypothetical protein
1629	 66.89	0	1859776..1860654	-	292	78062482	-	Bcep18194_B1632	-	outer membrane protein
1630	 64.74	0	1860858..1861169	-	103	78062483	-	Bcep18194_B1633	-	hypothetical protein
1631	 72.33	+1	1861186..1861485	-	99	78062484	-	Bcep18194_B1634	-	hypothetical protein
1632	 64.00	0	1861490..1861789	-	99	78062485	-	Bcep18194_B1635	-	hypothetical protein
1633	 71.49	+1	1861931..1862179	+	82	78062486	-	Bcep18194_B1636	-	hypothetical protein
1634	 69.68	0	1862552..1862983	+	143	78062487	-	Bcep18194_B1637	-	CBS domain-containing protein
1635	 69.90	0	1863043..1863567	+	174	78062488	-	Bcep18194_B1638	-	hypothetical protein
1636	 70.42	0	1863580..1864191	-	203	78062489	-	Bcep18194_B1639	-	hypothetical protein
1637	 71.17	+1	1864299..1866317	-	672	78062490	-	Bcep18194_B1640	-	PAS/PAC sensor hybrid histidine kinase
1638	 68.20	0	1866794..1867774	+	326	78062491	-	Bcep18194_B1641	-	sigma-54 dependent trancsriptional regulator
1639	 68.83	0	1867805..1869604	-	599	78062492	-	Bcep18194_B1642	-	methyl-accepting chemotaxis sensory transducer
1640	 63.14	-1	1869951..1870205	-	84	78062493	-	Bcep18194_B1643	-	hypothetical protein
1641	 74.02	+1	1870760..1871194	+	144	78062494	-	Bcep18194_B1644	-	hypothetical protein
1642	 68.48	0	1871745..1872680	-	311	78062495	-	Bcep18194_B1645	-	universal stress protein
1643	 64.71	0	1872898..1874280	-	460	78062496	-	Bcep18194_B1646	-	amino acid transporter
1644	 57.58	-2	1874908..1875237	+	109	78062497	-	Bcep18194_B1647	-	hypothetical protein
1645	 66.84	0	1875727..1876848	-	373	78062498	-	Bcep18194_B1648	-	uncharacterized membrane-associated protein
1646	 67.65	0	1876938..1877444	-	168	78062499	-	Bcep18194_B1649	-	hypothetical protein
1647	 71.55	+1	1877827..1878297	-	156	78062500	-	Bcep18194_B1650	-	universal stress protein
1648	 70.12	0	1878617..1880728	+	703	78062501	-	Bcep18194_B1651	-	multi-sensor signal transduction histidine kinase
1649	 67.13	0	1880725..1881372	+	215	78062502	-	Bcep18194_B1652	-	two component LuxR family transcriptional regulator
1650	 65.93	0	1881457..1881861	-	134	78062503	-	Bcep18194_B1653	-	hypothetical protein
1651	 66.17	0	1882208..1882810	+	200	78062504	-	Bcep18194_B1654	-	hypothetical protein
1652	 71.48	+1	1882834..1883622	+	262	78062505	-	Bcep18194_B1655	-	metal-binding integral membrane protein
1653	 73.94	+1	1883631..1884524	+	297	78062506	-	Bcep18194_B1656	-	hypothetical protein
1654	 63.30	-1	1884657..1884983	-	108	78062507	-	Bcep18194_B1657	-	hypothetical protein
1655	 73.02	+1	1885207..1886088	-	293	78062508	-	Bcep18194_B1658	-	hypothetical protein
1656	 69.33	0	1886168..1888756	-	862	78062509	-	Bcep18194_B1659	-	peptidoglycan glycosyltransferase
1657	 66.96	0	1888931..1889938	-	335	78062510	-	Bcep18194_B1660	-	proline racemase
1658	 66.13	0	1890004..1891125	-	373	78062511	-	Bcep18194_B1661	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
1659	 68.43	0	1891247..1891984	-	245	78062512	-	Bcep18194_B1662	-	GntR family transcriptional regulator
1660	 72.86	+1	1892249..1893184	+	311	78062513	-	Bcep18194_B1663	-	ornithine cyclodeaminase
1661	 67.65	0	1893353..1893757	+	134	78062514	-	Bcep18194_B1664	-	response regulator receiver domain-containing protein
1662	 66.03	0	1893774..1894553	+	259	78062515	-	Bcep18194_B1665	-	Crp/FNR family transcriptional regulator
1663	 72.73	+1	1894596..1894991	-	131	78062516	-	Bcep18194_B1666	-	hypothetical protein
1664	 62.50	-1	1895102..1895341	-	79	78062517	-	Bcep18194_B1667	-	hypothetical protein
1665	 66.67	0	1895364..1895648	-	94	78062518	-	Bcep18194_B1668	-	hypothetical protein
1666	 69.92	0	1895787..1896185	-	132	78062519	-	Bcep18194_B1669	-	hypothetical protein
1667	 68.25	0	1896349..1897551	-	400	78062520	-	Bcep18194_B1670	-	aromatic amino acid aminotransferase
1668	 64.36	0	1897597..1898982	-	461	78062521	-	Bcep18194_B1671	-	amino acid transporter
1669	 63.29	-1	1899302..1899775	+	157	78062522	-	Bcep18194_B1672	-	AsnC family transcriptional regulator
1670	 70.94	+1	1899806..1900717	-	303	78062523	-	Bcep18194_B1673	-	hypothetical protein
1671	 67.03	0	1901067..1902740	+	557	78062524	-	Bcep18194_B1674	-	phospholipase C
1672	 68.28	0	1902835..1904256	+	473	78062525	-	Bcep18194_B1675	-	di-haem cytochrome c peroxidase
1673	 69.13	0	1904286..1905017	-	243	78062526	-	Bcep18194_B1676	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
1674	 66.59	0	1905134..1906456	-	440	78062527	-	Bcep18194_B1677	-	hypothetical protein
1675	 70.86	+1	1906663..1907997	-	444	78062528	-	Bcep18194_B1678	-	Cl- channel, voltage gated
1676	 66.75	0	1908623..1909765	+	380	78062529	-	Bcep18194_B1679	-	outer membrane protein (porin)
1677	 66.67	0	1909982..1910284	+	100	78062530	-	Bcep18194_B1680	-	hypothetical protein
1678	 67.41	0	1910402..1911349	-	315	78062531	-	Bcep18194_B1681	-	LysR family transcriptional regulator
1679	 69.09	0	1911550..1913733	+	727	78062532	-	Bcep18194_B1682	-	fusaric acid resistance protein
1680	 63.00	-1	1913811..1914083	+	90	78062533	-	Bcep18194_B1683	-	hypothetical protein
1681	 70.90	+1	1914228..1915337	-	369	78062534	-	Bcep18194_B1684	-	aminopeptidase DmpA
1682	 67.16	0	1915409..1916815	-	468	78062535	-	Bcep18194_B1685	-	amino acid transporter
1683	 67.92	0	1916956..1917756	+	266	78062536	-	Bcep18194_B1686	-	LuxR family transcriptional regulator
1684	 67.19	0	1917895..1918278	+	127	78062537	-	Bcep18194_B1687	-	hypothetical protein
1685	 62.75	-1	1918356..1918661	-	101	78062538	-	Bcep18194_B1688	-	hypothetical protein
1686	 69.75	0	1918875..1920173	-	432	78062539	-	Bcep18194_B1689	-	cytochrome P450
1687	 68.04	0	1920237..1921328	+	363	78062540	-	Bcep18194_B1690	-	AraC family transcriptional regulator
1688	 68.11	0	1921475..1922305	+	276	78062541	-	Bcep18194_B1691	-	GntR family transcriptional regulator
1689	 67.39	0	1922319..1923563	-	414	78062542	-	Bcep18194_B1692	-	Beta-lactamase
1690	 68.81	0	1923860..1924744	+	294	78062543	-	Bcep18194_B1693	-	LysR family transcriptional regulator
1691	 71.67	+1	1924840..1925859	+	339	78062544	-	Bcep18194_B1694	-	auxin efflux carrier
1692	 71.58	+1	1925989..1926924	+	311	78062545	-	Bcep18194_B1695	-	hypothetical protein
1693	 63.20	-1	1927221..1927595	+	124	78062546	-	Bcep18194_B1696	-	hypothetical protein
1694	 68.05	0	1927752..1929269	-	505	78062547	-	Bcep18194_B1697	-	methylmalonate-semialdehyde dehydrogenase [acylating]
1695	 66.52	0	1929319..1930674	-	451	78062548	-	Bcep18194_B1698	-	beta alanine--pyruvate transaminase
1696	 63.84	0	1930705..1931730	+	341	78062549	-	Bcep18194_B1699	-	LysR family transcriptional regulator
1697	 68.60	0	1931933..1933171	-	412	78062550	-	Bcep18194_B1700	-	hypothetical protein
1698	 67.26	0	1933168..1933503	-	111	78062551	-	Bcep18194_B1701	-	hypothetical protein
1699	 70.06	0	1933541..1934011	-	156	78062552	-	Bcep18194_B1702	-	MarR family transcriptional regulator
1700	 71.34	+1	1934182..1934673	+	163	78062553	-	Bcep18194_B1703	-	hypothetical protein
1701	 66.49	0	1934773..1935924	-	383	78062554	-	Bcep18194_B1704	-	epoxide hydrolase-like
1702	 68.02	0	1936001..1936960	-	319	78062555	-	Bcep18194_B1705	-	transcriptional regulator
1703	 69.16	0	1937096..1937896	+	266	78062556	-	Bcep18194_B1706	-	Short-chain dehydrogenase/reductase SDR
1704	 70.09	0	1938237..1940045	+	602	78062557	-	Bcep18194_B1707	-	diguanylate cyclase
1705	 64.31	0	1940148..1940444	+	98	78062558	-	Bcep18194_B1708	-	hypothetical protein
1706	 68.53	0	1940471..1941811	-	446	78062559	-	Bcep18194_B1709	-	major facilitator transporter
1707	 68.30	0	1941899..1943248	-	449	78062560	-	Bcep18194_B1710	-	major facilitator transporter
1708	 65.31	0	1943428..1944387	-	319	78062561	-	Bcep18194_B1711	-	Beta-lactamase-like
1709	 74.06	+1	1944565..1946214	+	549	78062562	-	Bcep18194_B1712	-	IclR family transcriptional regulator
1710	 62.73	-1	1947027..1947509	-	160	78062563	-	Bcep18194_B1713	-	AsnC family transcriptional regulator
1711	 70.01	0	1947717..1948433	+	238	78062564	-	Bcep18194_B1714	-	lysine exporter protein LysE/YggA
1712	 67.35	0	1948556..1949731	+	391	78062565	-	Bcep18194_B1715	-	voltage-gated potassium channel
1713	 69.68	0	1949801..1950232	+	143	78062566	-	Bcep18194_B1716	-	membrane protein-like
1714	 68.10	0	1950284..1951750	-	488	78062567	-	Bcep18194_B1717	-	major facilitator transporter
1715	 69.01	0	1951791..1952813	-	340	78062568	-	Bcep18194_B1718	-	hypothetical protein
1716	 67.84	0	1952873..1954150	-	425	78062569	-	Bcep18194_B1719	-	L-carnitine dehydratase/bile acid-inducible protein F
1717	 67.33	0	1954169..1954918	-	249	78062570	-	Bcep18194_B1720	-	IclR family transcriptional regulator
1718	 71.80	+1	1955141..1956055	+	304	78062571	-	Bcep18194_B1721	-	Citryl-CoA lyase
1719	 65.64	0	1956215..1957288	+	357	78062572	-	Bcep18194_B1722	-	outer membrane protein (porin)
1720	 68.64	0	1957335..1958804	+	489	78062573	-	Bcep18194_B1723	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.