IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1571	 68.49	0	1783268..1784311	+	347	78062424	-	Bcep18194_B1574	-	zinc-containing alcohol dehydrogenase superfamily protein
1572	 63.90	0	1784393..1785802	+	469	78062425	-	Bcep18194_B1575	-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
1573	 63.57	0	1785703..1786638	-	311	78062426	-	Bcep18194_B1576	-	transposase
1574	 52.40	-2	1786810..1787580	-	256	78062427	-	Bcep18194_B1577	-	hypothetical protein
1575	 57.18	-2	1787577..1792247	-	1556	78062428	-	Bcep18194_B1578	-	Rhs family protein
1576	 62.05	-1	1792244..1793542	-	432	78062429	-	Bcep18194_B1579	-	hypothetical protein
1577	 64.10	0	1793560..1794183	-	207	78062430	-	Bcep18194_B1580	-	hypothetical protein
1578	 62.88	-1	1794239..1796512	-	757	78062431	-	Bcep18194_B1581	-	Rhs element Vgr protein
1579	 69.22	0	1796509..1799172	-	887	78062432	-	Bcep18194_B1582	-	AAA ATPase, Clp
1580	 72.92	+1	1799185..1800288	-	367	78062433	-	Bcep18194_B1583	-	hypothetical protein
1581	 70.25	0	1800285..1802156	-	623	78062434	-	Bcep18194_B1584	-	hypothetical protein
1582	 71.40	+1	1802161..1802709	-	182	78062435	-	Bcep18194_B1585	-	hypothetical protein
1583	 64.63	0	1802726..1803217	-	163	78062436	-	Bcep18194_B1586	-	hypothetical protein
1584	 65.01	0	1803289..1804797	-	502	78062437	-	Bcep18194_B1587	-	hypothetical protein
1585	 66.31	0	1804790..1805344	-	184	78062438	-	Bcep18194_B1588	-	hypothetical protein
1586	 72.04	+1	1805418..1806533	-	371	78062439	-	Bcep18194_B1589	-	ImpA-like
1587	 69.52	0	1806520..1808829	-	769	78062440	-	Bcep18194_B1590	-	serine/threonine protein kinase
1588	 71.12	+1	1808910..1809605	-	231	78062441	-	Bcep18194_B1591	-	hypothetical protein
1589	 69.40	0	1809587..1813213	-	1208	78062442	-	Bcep18194_B1592	-	hypothetical protein
1590	 71.35	+1	1813216..1814538	-	440	78062443	-	Bcep18194_B1593	-	hypothetical protein
1591	 69.49	0	1814554..1815972	-	472	78062444	-	Bcep18194_B1594	-	hypothetical protein
1592	 65.70	0	1815969..1816484	-	171	78062445	-	Bcep18194_B1595	-	hypothetical protein
1593	 61.55	-1	1817013..1817501	+	162	78062446	-	Bcep18194_B1596	-	hypothetical protein
1594	 69.20	0	1817546..1819003	+	485	78062447	-	Bcep18194_B1597	-	FHA domain-containing protein
1595	 66.13	0	1819058..1820536	-	492	78062448	-	Bcep18194_B1598	-	diguanylate cyclase
1596	 58.94	-2	1820552..1820797	-	81	78062449	-	Bcep18194_B1599	-	hypothetical protein
1597	 68.53	0	1820938..1822383	-	481	78062450	-	Bcep18194_B1600	-	2,5-dioxopentanoate dehydrogenase (NAD+)
1598	 69.05	0	1822536..1823834	-	432	78062451	-	Bcep18194_B1601	-	cytochrome c, class I
1599	 69.19	0	1823850..1826072	-	740	78062452	-	Bcep18194_B1602	-	aldehyde oxidase
1600	 70.39	0	1826074..1826529	-	151	78062453	-	Bcep18194_B1603	-	(2Fe-2S)-binding protein
1601	 65.33	0	1826663..1826962	-	99	78062454	-	Bcep18194_B1604	-	antibiotic biosynthesis monooxygenase
1602	 67.99	0	1827070..1828128	-	352	78062455	-	Bcep18194_B1605	-	zinc-containing alcohol dehydrogenase superfamily protein
1603	 63.61	0	1828363..1828983	-	206	78062456	-	Bcep18194_B1606	-	TetR family transcriptional regulator
1604	 67.81	0	1829291..1830862	+	523	78062457	-	Bcep18194_B1607	-	hypothetical protein
1605	 69.60	0	1830994..1832016	-	340	78062458	-	Bcep18194_B1608	-	hypothetical protein
1606	 62.45	-1	1832254..1832751	+	165	78062459	-	Bcep18194_B1609	-	hypothetical protein
1607	 70.44	0	1832915..1834372	+	485	78062460	-	Bcep18194_B1610	-	putative signal transduction histidine kinase
1608	 68.21	0	1834369..1835016	+	215	78062461	-	Bcep18194_B1611	-	two component LuxR family transcriptional regulator
1609	 69.89	0	1835215..1835586	+	123	78062462	-	Bcep18194_B1612	-	hypothetical protein
1610	 68.55	0	1835820..1837148	-	442	78062463	-	Bcep18194_B1613	-	major facilitator transporter
1611	 68.81	0	1837215..1838102	-	295	78062464	-	Bcep18194_B1614	-	2,3-dimethylmalate lyase
1612	 69.58	0	1838111..1839001	-	296	78062465	-	Bcep18194_B1615	-	amidohydrolase 2
1613	 69.90	0	1839069..1840367	-	432	78062466	-	Bcep18194_B1616	-	major facilitator transporter
1614	 71.24	+1	1840491..1841387	+	298	78062467	-	Bcep18194_B1617	-	LysR family transcriptional regulator
1615	 71.73	+1	1841481..1842152	+	223	78062468	-	Bcep18194_B1618	-	cation efflux protein
1616	 67.08	0	1842345..1843562	-	405	78062469	-	Bcep18194_B1619	-	LuxR family transcriptional regulator
1617	 71.35	+1	1843817..1844755	+	312	78062470	-	Bcep18194_B1620	-	lipolytic protein
1618	 70.49	0	1844752..1845876	+	374	78062471	-	Bcep18194_B1621	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
1619	 69.00	0	1846029..1846457	+	142	78062472	-	Bcep18194_B1622	-	XRE family transcriptional regulator
1620	 69.05	0	1846460..1847800	+	446	78062473	-	Bcep18194_B1623	-	uncharacterized protein related to capsule biosynthesis enzyme-like
1621	 69.65	0	1848195..1849466	+	423	78062474	-	Bcep18194_B1624	-	NADH-flavin oxidoreductase/NADH oxidase
1622	 66.67	0	1849509..1850636	-	375	78062475	-	Bcep18194_B1625	-	4-hydroxyphenylpyruvate dioxygenase
1623	 66.21	0	1850993..1852300	+	435	78062476	-	Bcep18194_B1626	-	shikimate transporter
1624	 67.26	0	1852482..1853819	+	445	78062477	-	Bcep18194_B1627	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1625	 66.50	0	1853906..1854517	-	203	78062478	-	Bcep18194_B1628	-	hypothetical protein
1626	 68.35	0	1854812..1855582	+	256	78062479	-	Bcep18194_B1629	-	IclR family transcriptional regulator
1627	 70.19	0	1855688..1857988	-	766	78062480	-	Bcep18194_B1630	-	Rad3-related DNA helicases-like
1628	 70.09	0	1857985..1859679	-	564	78062481	-	Bcep18194_B1631	-	hypothetical protein
1629	 66.89	0	1859776..1860654	-	292	78062482	-	Bcep18194_B1632	-	outer membrane protein
1630	 64.74	0	1860858..1861169	-	103	78062483	-	Bcep18194_B1633	-	hypothetical protein
1631	 72.33	+1	1861186..1861485	-	99	78062484	-	Bcep18194_B1634	-	hypothetical protein
1632	 64.00	0	1861490..1861789	-	99	78062485	-	Bcep18194_B1635	-	hypothetical protein
1633	 71.49	+1	1861931..1862179	+	82	78062486	-	Bcep18194_B1636	-	hypothetical protein
1634	 69.68	0	1862552..1862983	+	143	78062487	-	Bcep18194_B1637	-	CBS domain-containing protein
1635	 69.90	0	1863043..1863567	+	174	78062488	-	Bcep18194_B1638	-	hypothetical protein
1636	 70.42	0	1863580..1864191	-	203	78062489	-	Bcep18194_B1639	-	hypothetical protein
1637	 71.17	+1	1864299..1866317	-	672	78062490	-	Bcep18194_B1640	-	PAS/PAC sensor hybrid histidine kinase
1638	 68.20	0	1866794..1867774	+	326	78062491	-	Bcep18194_B1641	-	sigma-54 dependent trancsriptional regulator
1639	 68.83	0	1867805..1869604	-	599	78062492	-	Bcep18194_B1642	-	methyl-accepting chemotaxis sensory transducer
1640	 63.14	-1	1869951..1870205	-	84	78062493	-	Bcep18194_B1643	-	hypothetical protein
1641	 74.02	+1	1870760..1871194	+	144	78062494	-	Bcep18194_B1644	-	hypothetical protein
1642	 68.48	0	1871745..1872680	-	311	78062495	-	Bcep18194_B1645	-	universal stress protein
1643	 64.71	0	1872898..1874280	-	460	78062496	-	Bcep18194_B1646	-	amino acid transporter
1644	 57.58	-2	1874908..1875237	+	109	78062497	-	Bcep18194_B1647	-	hypothetical protein
1645	 66.84	0	1875727..1876848	-	373	78062498	-	Bcep18194_B1648	-	uncharacterized membrane-associated protein
1646	 67.65	0	1876938..1877444	-	168	78062499	-	Bcep18194_B1649	-	hypothetical protein
1647	 71.55	+1	1877827..1878297	-	156	78062500	-	Bcep18194_B1650	-	universal stress protein
1648	 70.12	0	1878617..1880728	+	703	78062501	-	Bcep18194_B1651	-	multi-sensor signal transduction histidine kinase
1649	 67.13	0	1880725..1881372	+	215	78062502	-	Bcep18194_B1652	-	two component LuxR family transcriptional regulator
1650	 65.93	0	1881457..1881861	-	134	78062503	-	Bcep18194_B1653	-	hypothetical protein
1651	 66.17	0	1882208..1882810	+	200	78062504	-	Bcep18194_B1654	-	hypothetical protein
1652	 71.48	+1	1882834..1883622	+	262	78062505	-	Bcep18194_B1655	-	metal-binding integral membrane protein
1653	 73.94	+1	1883631..1884524	+	297	78062506	-	Bcep18194_B1656	-	hypothetical protein
1654	 63.30	-1	1884657..1884983	-	108	78062507	-	Bcep18194_B1657	-	hypothetical protein
1655	 73.02	+1	1885207..1886088	-	293	78062508	-	Bcep18194_B1658	-	hypothetical protein
1656	 69.33	0	1886168..1888756	-	862	78062509	-	Bcep18194_B1659	-	peptidoglycan glycosyltransferase
1657	 66.96	0	1888931..1889938	-	335	78062510	-	Bcep18194_B1660	-	proline racemase
1658	 66.13	0	1890004..1891125	-	373	78062511	-	Bcep18194_B1661	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
1659	 68.43	0	1891247..1891984	-	245	78062512	-	Bcep18194_B1662	-	GntR family transcriptional regulator
1660	 72.86	+1	1892249..1893184	+	311	78062513	-	Bcep18194_B1663	-	ornithine cyclodeaminase
1661	 67.65	0	1893353..1893757	+	134	78062514	-	Bcep18194_B1664	-	response regulator receiver domain-containing protein
1662	 66.03	0	1893774..1894553	+	259	78062515	-	Bcep18194_B1665	-	Crp/FNR family transcriptional regulator
1663	 72.73	+1	1894596..1894991	-	131	78062516	-	Bcep18194_B1666	-	hypothetical protein
1664	 62.50	-1	1895102..1895341	-	79	78062517	-	Bcep18194_B1667	-	hypothetical protein
1665	 66.67	0	1895364..1895648	-	94	78062518	-	Bcep18194_B1668	-	hypothetical protein
1666	 69.92	0	1895787..1896185	-	132	78062519	-	Bcep18194_B1669	-	hypothetical protein
1667	 68.25	0	1896349..1897551	-	400	78062520	-	Bcep18194_B1670	-	aromatic amino acid aminotransferase
1668	 64.36	0	1897597..1898982	-	461	78062521	-	Bcep18194_B1671	-	amino acid transporter
1669	 63.29	-1	1899302..1899775	+	157	78062522	-	Bcep18194_B1672	-	AsnC family transcriptional regulator
1670	 70.94	+1	1899806..1900717	-	303	78062523	-	Bcep18194_B1673	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.