IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1536	 63.77	0	1734023..1734298	-	91	78062389	-	Bcep18194_B1539	-	hypothetical protein
1537	 69.89	0	1734556..1736106	-	516	78062390	-	Bcep18194_B1540	-	diguanylate cyclase
1538	 67.95	0	1736626..1739502	+	958	78062391	-	Bcep18194_B1541	-	aldehyde oxidase
1539	 67.81	0	1739499..1740200	+	233	78062392	-	Bcep18194_B1542	-	(2Fe-2S)-binding protein
1540	 70.24	0	1740197..1741456	+	419	78062393	-	Bcep18194_B1543	-	cytochrome c, class I
1541	 66.67	0	1741926..1742390	+	154	78062394	-	Bcep18194_B1544	-	hypothetical protein
1542	 64.23	0	1742527..1743018	-	163	78062395	-	Bcep18194_B1545	-	OmpA/MotB family outer membrane protein
1543	 67.74	0	1743413..1744624	-	403	78062396	-	Bcep18194_B1546	-	outer membrane protein (porin)
1544	 68.74	0	1744870..1745448	-	192	78062397	-	Bcep18194_B1547	-	hypothetical protein
1545	 62.72	-1	1745491..1745946	-	151	78062398	-	Bcep18194_B1548	-	glyoxalase/bleomycin resistance protein/dioxygenase
1546	 67.84	0	1746373..1747476	+	367	78062399	-	Bcep18194_B1549	-	LuxR family transcriptional regulator
1547	 70.37	0	1747689..1749119	+	476	78062400	-	Bcep18194_B1550	-	amidase
1548	 66.18	0	1749409..1750446	-	345	78062401	-	Bcep18194_B1551	-	zinc-containing alcohol dehydrogenase superfamily protein
1549	 66.73	0	1750684..1752375	+	563	78062402	-	Bcep18194_B1552	-	extracellular solute-binding protein
1550	 63.96	0	1752503..1753498	-	331	78062403	-	Bcep18194_B1553	-	transcriptional regulator
1551	 64.31	0	1753834..1754808	+	324	78062404	-	Bcep18194_B1554	-	2-nitropropane dioxygenase, NPD
1552	 67.55	0	1755385..1756515	+	376	78062405	-	Bcep18194_B1555	-	ATPase AAA_5
1553	 72.04	+1	1756660..1759152	+	830	78062406	-	Bcep18194_B1556	-	hypothetical protein
1554	 68.76	0	1759232..1760377	+	381	78062407	-	Bcep18194_B1557	-	VWA containing CoxE-like protein
1555	 73.56	+1	1760374..1762608	+	744	78062408	-	Bcep18194_B1558	-	hypothetical protein
1556	 70.18	0	1762777..1767045	+	1422	78062409	-	Bcep18194_B1559	-	hypothetical protein
1557	 65.59	0	1767072..1768184	+	370	78062410	-	Bcep18194_B1560	-	hypothetical protein
1558	 66.12	0	1767093..1768364	-	423	78062411	-	Bcep18194_B1561	-	hypothetical protein
1559	 68.09	0	1768694..1770736	+	680	78062412	-	Bcep18194_B1562	-	periplasmic sensor signal transduction histidine kinase
1560	 67.42	0	1770703..1771362	-	219	78062413	-	Bcep18194_B1563	-	two component transcriptional regulator
1561	 66.10	0	1771659..1773593	-	644	78062414	-	Bcep18194_B1564	-	sedolisin-B
1562	 58.51	-2	1774664..1774945	-	93	78062415	-	Bcep18194_B1565	-	hypothetical protein
1563	 59.80	-1	1774950..1775342	-	130	78062416	-	Bcep18194_B1566	-	hypothetical protein
1564	 65.31	0	1776090..1777346	+	418	78062417	-	Bcep18194_B1567	-	Acyl-CoA dehydrogenase-like
1565	 61.04	-1	1777404..1777901	+	165	78062418	-	Bcep18194_B1568	-	phenazine biosynthesis protein A/B
1566	 62.98	-1	1777925..1778548	+	207	78062419	-	Bcep18194_B1569	-	isochorismatase
1567	 66.05	0	1778545..1780476	+	643	78062420	-	Bcep18194_B1570	-	anthranilate/para-aminobenzoate synthasecomponent I
1568	 67.44	0	1780824..1781729	+	301	78062421	-	Bcep18194_B1571	-	phenazine biosynthesis PhzC/PhzF protein
1569	 65.57	0	1781767..1782405	+	212	78062422	-	Bcep18194_B1572	-	pyridoxamine 5'-phosphate oxidase
1570	 66.07	0	1782432..1783271	+	279	78062423	-	Bcep18194_B1573	-	protein of unknown function Mtu_121
1571	 68.49	0	1783268..1784311	+	347	78062424	-	Bcep18194_B1574	-	zinc-containing alcohol dehydrogenase superfamily protein
1572	 63.90	0	1784393..1785802	+	469	78062425	-	Bcep18194_B1575	-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
1573	 63.57	0	1785703..1786638	-	311	78062426	-	Bcep18194_B1576	-	transposase
1574	 52.40	-2	1786810..1787580	-	256	78062427	-	Bcep18194_B1577	-	hypothetical protein
1575	 57.18	-2	1787577..1792247	-	1556	78062428	-	Bcep18194_B1578	-	Rhs family protein
1576	 62.05	-1	1792244..1793542	-	432	78062429	-	Bcep18194_B1579	-	hypothetical protein
1577	 64.10	0	1793560..1794183	-	207	78062430	-	Bcep18194_B1580	-	hypothetical protein
1578	 62.88	-1	1794239..1796512	-	757	78062431	-	Bcep18194_B1581	-	Rhs element Vgr protein
1579	 69.22	0	1796509..1799172	-	887	78062432	-	Bcep18194_B1582	-	AAA ATPase, Clp
1580	 72.92	+1	1799185..1800288	-	367	78062433	-	Bcep18194_B1583	-	hypothetical protein
1581	 70.25	0	1800285..1802156	-	623	78062434	-	Bcep18194_B1584	-	hypothetical protein
1582	 71.40	+1	1802161..1802709	-	182	78062435	-	Bcep18194_B1585	-	hypothetical protein
1583	 64.63	0	1802726..1803217	-	163	78062436	-	Bcep18194_B1586	-	hypothetical protein
1584	 65.01	0	1803289..1804797	-	502	78062437	-	Bcep18194_B1587	-	hypothetical protein
1585	 66.31	0	1804790..1805344	-	184	78062438	-	Bcep18194_B1588	-	hypothetical protein
1586	 72.04	+1	1805418..1806533	-	371	78062439	-	Bcep18194_B1589	-	ImpA-like
1587	 69.52	0	1806520..1808829	-	769	78062440	-	Bcep18194_B1590	-	serine/threonine protein kinase
1588	 71.12	+1	1808910..1809605	-	231	78062441	-	Bcep18194_B1591	-	hypothetical protein
1589	 69.40	0	1809587..1813213	-	1208	78062442	-	Bcep18194_B1592	-	hypothetical protein
1590	 71.35	+1	1813216..1814538	-	440	78062443	-	Bcep18194_B1593	-	hypothetical protein
1591	 69.49	0	1814554..1815972	-	472	78062444	-	Bcep18194_B1594	-	hypothetical protein
1592	 65.70	0	1815969..1816484	-	171	78062445	-	Bcep18194_B1595	-	hypothetical protein
1593	 61.55	-1	1817013..1817501	+	162	78062446	-	Bcep18194_B1596	-	hypothetical protein
1594	 69.20	0	1817546..1819003	+	485	78062447	-	Bcep18194_B1597	-	FHA domain-containing protein
1595	 66.13	0	1819058..1820536	-	492	78062448	-	Bcep18194_B1598	-	diguanylate cyclase
1596	 58.94	-2	1820552..1820797	-	81	78062449	-	Bcep18194_B1599	-	hypothetical protein
1597	 68.53	0	1820938..1822383	-	481	78062450	-	Bcep18194_B1600	-	2,5-dioxopentanoate dehydrogenase (NAD+)
1598	 69.05	0	1822536..1823834	-	432	78062451	-	Bcep18194_B1601	-	cytochrome c, class I
1599	 69.19	0	1823850..1826072	-	740	78062452	-	Bcep18194_B1602	-	aldehyde oxidase
1600	 70.39	0	1826074..1826529	-	151	78062453	-	Bcep18194_B1603	-	(2Fe-2S)-binding protein
1601	 65.33	0	1826663..1826962	-	99	78062454	-	Bcep18194_B1604	-	antibiotic biosynthesis monooxygenase
1602	 67.99	0	1827070..1828128	-	352	78062455	-	Bcep18194_B1605	-	zinc-containing alcohol dehydrogenase superfamily protein
1603	 63.61	0	1828363..1828983	-	206	78062456	-	Bcep18194_B1606	-	TetR family transcriptional regulator
1604	 67.81	0	1829291..1830862	+	523	78062457	-	Bcep18194_B1607	-	hypothetical protein
1605	 69.60	0	1830994..1832016	-	340	78062458	-	Bcep18194_B1608	-	hypothetical protein
1606	 62.45	-1	1832254..1832751	+	165	78062459	-	Bcep18194_B1609	-	hypothetical protein
1607	 70.44	0	1832915..1834372	+	485	78062460	-	Bcep18194_B1610	-	putative signal transduction histidine kinase
1608	 68.21	0	1834369..1835016	+	215	78062461	-	Bcep18194_B1611	-	two component LuxR family transcriptional regulator
1609	 69.89	0	1835215..1835586	+	123	78062462	-	Bcep18194_B1612	-	hypothetical protein
1610	 68.55	0	1835820..1837148	-	442	78062463	-	Bcep18194_B1613	-	major facilitator transporter
1611	 68.81	0	1837215..1838102	-	295	78062464	-	Bcep18194_B1614	-	2,3-dimethylmalate lyase
1612	 69.58	0	1838111..1839001	-	296	78062465	-	Bcep18194_B1615	-	amidohydrolase 2
1613	 69.90	0	1839069..1840367	-	432	78062466	-	Bcep18194_B1616	-	major facilitator transporter
1614	 71.24	+1	1840491..1841387	+	298	78062467	-	Bcep18194_B1617	-	LysR family transcriptional regulator
1615	 71.73	+1	1841481..1842152	+	223	78062468	-	Bcep18194_B1618	-	cation efflux protein
1616	 67.08	0	1842345..1843562	-	405	78062469	-	Bcep18194_B1619	-	LuxR family transcriptional regulator
1617	 71.35	+1	1843817..1844755	+	312	78062470	-	Bcep18194_B1620	-	lipolytic protein
1618	 70.49	0	1844752..1845876	+	374	78062471	-	Bcep18194_B1621	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
1619	 69.00	0	1846029..1846457	+	142	78062472	-	Bcep18194_B1622	-	XRE family transcriptional regulator
1620	 69.05	0	1846460..1847800	+	446	78062473	-	Bcep18194_B1623	-	uncharacterized protein related to capsule biosynthesis enzyme-like
1621	 69.65	0	1848195..1849466	+	423	78062474	-	Bcep18194_B1624	-	NADH-flavin oxidoreductase/NADH oxidase
1622	 66.67	0	1849509..1850636	-	375	78062475	-	Bcep18194_B1625	-	4-hydroxyphenylpyruvate dioxygenase
1623	 66.21	0	1850993..1852300	+	435	78062476	-	Bcep18194_B1626	-	shikimate transporter
1624	 67.26	0	1852482..1853819	+	445	78062477	-	Bcep18194_B1627	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1625	 66.50	0	1853906..1854517	-	203	78062478	-	Bcep18194_B1628	-	hypothetical protein
1626	 68.35	0	1854812..1855582	+	256	78062479	-	Bcep18194_B1629	-	IclR family transcriptional regulator
1627	 70.19	0	1855688..1857988	-	766	78062480	-	Bcep18194_B1630	-	Rad3-related DNA helicases-like
1628	 70.09	0	1857985..1859679	-	564	78062481	-	Bcep18194_B1631	-	hypothetical protein
1629	 66.89	0	1859776..1860654	-	292	78062482	-	Bcep18194_B1632	-	outer membrane protein
1630	 64.74	0	1860858..1861169	-	103	78062483	-	Bcep18194_B1633	-	hypothetical protein
1631	 72.33	+1	1861186..1861485	-	99	78062484	-	Bcep18194_B1634	-	hypothetical protein
1632	 64.00	0	1861490..1861789	-	99	78062485	-	Bcep18194_B1635	-	hypothetical protein
1633	 71.49	+1	1861931..1862179	+	82	78062486	-	Bcep18194_B1636	-	hypothetical protein
1634	 69.68	0	1862552..1862983	+	143	78062487	-	Bcep18194_B1637	-	CBS domain-containing protein
1635	 69.90	0	1863043..1863567	+	174	78062488	-	Bcep18194_B1638	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.