IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1458	 65.71	0	1654294..1655859	-	521	78062311	-	Bcep18194_B1461	-	hypothetical protein
1459	 72.05	+1	1656016..1656795	-	259	78062312	-	Bcep18194_B1462	-	short chain dehydrogenase
1460	 65.59	0	1656933..1657769	+	278	78062313	-	Bcep18194_B1463	-	Alpha/beta hydrolase
1461	 68.06	0	1657836..1658624	+	262	78062314	-	Bcep18194_B1464	-	Short-chain dehydrogenase/reductase SDR
1462	 65.87	0	1658663..1659412	+	249	78062315	-	Bcep18194_B1465	-	electron transfer flavoprotein subunit beta
1463	 65.40	0	1659429..1660373	+	314	78062316	-	Bcep18194_B1466	-	electron transfer flavoprotein subunit alpha/beta
1464	 69.13	0	1660377..1660904	+	175	78062317	-	Bcep18194_B1467	-	carbonic anhydrase
1465	 56.63	-2	1661003..1661251	+	82	78062318	-	Bcep18194_B1468	-	hypothetical protein
1466	 66.57	0	1661343..1662425	-	360	78062319	-	Bcep18194_B1469	-	outer membrane protein (porin)-like
1467	 63.15	-1	1662586..1663296	-	236	78062320	-	Bcep18194_B1470	-	membrane protein-like
1468	 64.49	0	1663480..1665267	-	595	78062321	-	Bcep18194_B1471	-	adenine deaminase
1469	 64.78	0	1665464..1666366	+	300	78062322	-	Bcep18194_B1472	-	LysR family transcriptional regulator
1470	 65.67	0	1666469..1666768	+	99	78062323	-	Bcep18194_B1473	-	hypothetical protein
1471	 64.09	0	1666791..1667255	-	154	78062324	-	Bcep18194_B1474	-	hypothetical protein
1472	 72.64	+1	1668182..1669018	+	278	78062325	-	Bcep18194_B1475	-	hypothetical protein
1473	 63.35	0	1669141..1669653	-	170	78062326	-	Bcep18194_B1476	-	AsnC family transcriptional regulator
1474	 68.75	0	1669680..1670351	+	223	78062327	-	Bcep18194_B1477	-	lysine exporter protein LysE/YggA
1475	 61.48	-1	1670348..1670752	-	134	78062328	-	Bcep18194_B1478	-	hypothetical protein
1476	 68.12	0	1670776..1671804	-	342	78062329	-	Bcep18194_B1479	-	esterase/lipase/thioesterase
1477	 67.36	0	1671801..1672373	-	190	78062330	-	Bcep18194_B1480	-	hypothetical protein
1478	 66.41	0	1672469..1673260	-	263	78062331	-	Bcep18194_B1481	-	GCN5-related N-acetyltransferase
1479	 59.87	-1	1673544..1673852	+	102	78062332	-	Bcep18194_B1482	-	ArsR family transcriptional regulator
1480	 60.05	-1	1673849..1674256	+	135	78062333	-	Bcep18194_B1483	-	glyoxalase/bleomycin resistance protein/dioxygenase
1481	 64.73	0	1674273..1675772	+	499	78062334	-	Bcep18194_B1484	-	hypothetical protein
1482	 66.35	0	1676003..1678210	-	735	78062335	-	Bcep18194_B1485	-	TonB-dependent receptor
1483	 70.25	0	1678553..1679611	-	352	78062336	-	Bcep18194_B1486	-	AraC family transcriptional regulator
1484	 71.88	+1	1679779..1680123	+	114	78062337	-	Bcep18194_B1487	-	hypothetical protein
1485	 68.72	0	1680113..1680745	+	210	78062338	-	Bcep18194_B1488	-	hypothetical protein
1486	 71.40	+1	1680794..1681786	+	330	78062339	-	Bcep18194_B1489	-	zinc-containing alcohol dehydrogenase superfamily protein
1487	 71.18	+1	1681764..1682693	+	309	78062340	-	Bcep18194_B1490	-	Short-chain dehydrogenase/reductase SDR
1488	 68.85	0	1682699..1683523	+	274	78062341	-	Bcep18194_B1491	-	Short-chain dehydrogenase/reductase SDR
1489	 70.28	0	1683559..1683807	-	82	78062342	-	Bcep18194_B1492	-	hypothetical protein
1490	 67.90	0	1683925..1684899	-	324	78062343	-	Bcep18194_B1493	-	serine/threonine dehydratase
1491	 66.67	0	1684961..1685599	-	212	78062344	-	Bcep18194_B1494	-	hypothetical protein
1492	 69.05	0	1685662..1686165	-	167	78062345	-	Bcep18194_B1495	-	hypothetical protein
1493	 61.31	-1	1686305..1687666	-	453	78062346	-	Bcep18194_B1496	-	FAD dependent oxidoreductase
1494	 56.07	-2	1687752..1688270	-	172	78062347	-	Bcep18194_B1497	-	hypothetical protein
1495	 61.41	-1	1689162..1689713	+	183	78062348	-	Bcep18194_B1498	-	TetR family transcriptional regulator
1496	 59.47	-2	1689959..1690834	+	291	78062349	-	Bcep18194_B1499	-	hypothetical protein
1497	 57.98	-2	1691158..1692078	+	306	78062350	-	Bcep18194_B1500	-	L-proline dehydrogenase
1498	 62.16	-1	1692417..1693325	+	302	78062351	-	Bcep18194_B1501	-	Alpha/beta hydrolase
1499	 61.43	-1	1693514..1693933	-	139	78062352	-	Bcep18194_B1502	-	NUDIX hydrolase
1500	 60.04	-1	1694107..1694619	+	170	78062353	-	Bcep18194_B1503	-	GCN5-related N-acetyltransferase
1501	 52.82	-2	1694750..1695139	+	129	78062354	-	Bcep18194_B1504	-	hypothetical protein
1502	 64.99	0	1695241..1695957	-	238	78062355	-	Bcep18194_B1505	-	hypothetical protein
1503	 63.94	0	1696008..1696520	-	170	78062356	-	Bcep18194_B1506	-	hypothetical protein
1504	 68.06	0	1696733..1697233	+	166	78062357	-	Bcep18194_B1507	-	hypothetical protein
1505	 68.40	0	1697284..1698150	+	288	78062358	-	Bcep18194_B1508	-	Short-chain dehydrogenase/reductase SDR
1506	 69.58	0	1698160..1698915	+	251	78062359	-	Bcep18194_B1509	-	Short-chain dehydrogenase/reductase SDR
1507	 67.95	0	1699026..1699802	+	258	78062360	-	Bcep18194_B1510	-	Short-chain dehydrogenase/reductase SDR
1508	 66.29	0	1700328..1702193	+	621	78062361	-	Bcep18194_B1511	-	phosphoenolpyruvate carboxykinase
1509	 69.86	0	1702291..1703199	-	302	78062362	-	Bcep18194_B1512	-	NAD-dependent epimerase/dehydratase
1510	 68.34	0	1703258..1704094	-	278	78062363	-	Bcep18194_B1513	-	Short-chain dehydrogenase/reductase SDR
1511	 67.33	0	1704132..1704890	-	252	78062364	-	Bcep18194_B1514	-	Short-chain dehydrogenase/reductase SDR
1512	 72.96	+1	1704931..1705788	-	285	78062365	-	Bcep18194_B1515	-	Short-chain dehydrogenase/reductase SDR
1513	 69.54	0	1705792..1706208	-	138	78062366	-	Bcep18194_B1516	-	hypothetical protein
1514	 66.17	0	1706271..1706879	+	202	78062367	-	Bcep18194_B1517	-	hypothetical protein
1515	 70.21	0	1707174..1708670	+	498	78062368	-	Bcep18194_B1518	-	hypothetical protein
1516	 68.31	0	1708780..1710546	-	588	78062369	-	Bcep18194_B1519	-	phosphoesterase
1517	 68.88	0	1710818..1712896	+	692	78062370	-	Bcep18194_B1520	-	FtsH-2 peptidase
1518	 67.09	0	1712980..1713447	+	155	78062371	-	Bcep18194_B1521	-	hypothetical protein
1519	 66.88	0	1713455..1714861	-	468	78062372	-	Bcep18194_B1522	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1520	 66.60	0	1715507..1717126	-	539	78062373	-	Bcep18194_B1523	-	methyl-accepting chemotaxis sensory transducer
1521	 68.98	0	1717595..1719673	-	692	78062374	-	Bcep18194_B1524	-	TonB-dependent receptor
1522	 62.55	-1	1720264..1720773	+	169	78062375	-	Bcep18194_B1525	-	6,7-dimethyl-8-ribityllumazine synthase
1523	 66.67	0	1720878..1721309	-	143	78062376	-	Bcep18194_B1526	-	MarR family transcriptional regulator
1524	 71.02	+1	1721306..1722223	-	305	78062377	-	Bcep18194_B1527	-	alpha/beta hydrolase-like
1525	 68.43	0	1722524..1723489	+	321	78062378	-	Bcep18194_B1528	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1526	 71.51	+1	1723542..1724636	+	364	78062379	-	Bcep18194_B1529	-	alkanesulfonate monooxygenase
1527	 70.30	0	1724737..1725672	-	311	78062380	-	Bcep18194_B1530	-	ABC amino acid transporter, periplasmic ligand binding protein
1528	 69.41	0	1725707..1727566	-	619	78062381	-	Bcep18194_B1531	-	amino acid ABC transporter inner membrane protein
1529	 67.70	0	1727566..1728918	-	450	78062382	-	Bcep18194_B1532	-	flavin-dependent oxidoreductase
1530	 70.38	0	1728926..1729975	-	349	78062383	-	Bcep18194_B1533	-	flavin-dependent oxidoreductase
1531	 68.35	0	1730039..1730986	-	315	78062384	-	Bcep18194_B1534	-	ABC amino acid transporter, periplasmic ligand binding protein
1532	 68.08	0	1731043..1731609	-	188	78062385	-	Bcep18194_B1535	-	GCN5-related N-acetyltransferase
1533	 61.94	-1	1731924..1732325	-	133	78062386	-	Bcep18194_B1536	-	XRE family transcriptional regulator
1534	 58.59	-2	1732328..1732624	-	98	78062387	-	Bcep18194_B1537	-	hypothetical protein
1535	 68.30	0	1732728..1733768	-	346	78062388	-	Bcep18194_B1538	-	succinylglutamate desuccinylase/aspartoacylase
1536	 63.77	0	1734023..1734298	-	91	78062389	-	Bcep18194_B1539	-	hypothetical protein
1537	 69.89	0	1734556..1736106	-	516	78062390	-	Bcep18194_B1540	-	diguanylate cyclase
1538	 67.95	0	1736626..1739502	+	958	78062391	-	Bcep18194_B1541	-	aldehyde oxidase
1539	 67.81	0	1739499..1740200	+	233	78062392	-	Bcep18194_B1542	-	(2Fe-2S)-binding protein
1540	 70.24	0	1740197..1741456	+	419	78062393	-	Bcep18194_B1543	-	cytochrome c, class I
1541	 66.67	0	1741926..1742390	+	154	78062394	-	Bcep18194_B1544	-	hypothetical protein
1542	 64.23	0	1742527..1743018	-	163	78062395	-	Bcep18194_B1545	-	OmpA/MotB family outer membrane protein
1543	 67.74	0	1743413..1744624	-	403	78062396	-	Bcep18194_B1546	-	outer membrane protein (porin)
1544	 68.74	0	1744870..1745448	-	192	78062397	-	Bcep18194_B1547	-	hypothetical protein
1545	 62.72	-1	1745491..1745946	-	151	78062398	-	Bcep18194_B1548	-	glyoxalase/bleomycin resistance protein/dioxygenase
1546	 67.84	0	1746373..1747476	+	367	78062399	-	Bcep18194_B1549	-	LuxR family transcriptional regulator
1547	 70.37	0	1747689..1749119	+	476	78062400	-	Bcep18194_B1550	-	amidase
1548	 66.18	0	1749409..1750446	-	345	78062401	-	Bcep18194_B1551	-	zinc-containing alcohol dehydrogenase superfamily protein
1549	 66.73	0	1750684..1752375	+	563	78062402	-	Bcep18194_B1552	-	extracellular solute-binding protein
1550	 63.96	0	1752503..1753498	-	331	78062403	-	Bcep18194_B1553	-	transcriptional regulator
1551	 64.31	0	1753834..1754808	+	324	78062404	-	Bcep18194_B1554	-	2-nitropropane dioxygenase, NPD
1552	 67.55	0	1755385..1756515	+	376	78062405	-	Bcep18194_B1555	-	ATPase AAA_5
1553	 72.04	+1	1756660..1759152	+	830	78062406	-	Bcep18194_B1556	-	hypothetical protein
1554	 68.76	0	1759232..1760377	+	381	78062407	-	Bcep18194_B1557	-	VWA containing CoxE-like protein
1555	 73.56	+1	1760374..1762608	+	744	78062408	-	Bcep18194_B1558	-	hypothetical protein
1556	 70.18	0	1762777..1767045	+	1422	78062409	-	Bcep18194_B1559	-	hypothetical protein
1557	 65.59	0	1767072..1768184	+	370	78062410	-	Bcep18194_B1560	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.