IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1290	 64.88	0	1467451..1469070	+	539	78062143	-	Bcep18194_B1293	-	glucose-methanol-choline oxidoreductase
1291	 68.00	0	1469073..1470350	+	425	78062144	-	Bcep18194_B1294	-	cytochrome c, class I
1292	 62.57	-1	1470419..1470955	+	178	78062145	-	Bcep18194_B1295	-	DoxX family membrane protein
1293	 64.95	0	1471019..1472125	+	368	78062146	-	Bcep18194_B1296	-	outer membrane protein (porin)
1294	 68.41	0	1472213..1473532	-	439	78062147	-	Bcep18194_B1297	-	major facilitator transporter
1295	 68.61	0	1473577..1474761	-	394	78062148	-	Bcep18194_B1298	-	peptidase M20D, amidohydrolase
1296	 69.44	0	1474944..1475846	+	300	78062149	-	Bcep18194_B1299	-	LysR family transcriptional regulator
1297	 61.68	-1	1476056..1476376	+	106	78062150	-	Bcep18194_B1300	-	hypothetical protein
1298	 61.23	-1	1476465..1476869	-	134	78062151	-	Bcep18194_B1301	-	hypothetical protein
1299	 69.13	0	1477282..1479069	-	595	78062152	-	Bcep18194_B1302	-	Cl- channel, voltage gated
1300	 64.49	0	1479090..1479503	-	137	78062153	-	Bcep18194_B1303	-	MarR family transcriptional regulator
1301	 70.83	+1	1479636..1480811	-	391	78062154	-	Bcep18194_B1304	-	CBS domain-containing protein
1302	 67.39	0	1481175..1482143	+	322	78062155	-	Bcep18194_B1305	-	LysR family transcriptional regulator
1303	 68.64	0	1482193..1483557	-	454	78062156	-	Bcep18194_B1306	-	major facilitator transporter
1304	 70.65	+1	1483624..1484628	-	334	78062157	-	Bcep18194_B1307	-	D-isomer specific 2-hydroxyacid dehydrogenase
1305	 69.97	0	1484676..1485584	+	302	78062158	-	Bcep18194_B1308	-	LysR family transcriptional regulator
1306	 67.06	0	1485875..1486903	+	342	78062159	-	Bcep18194_B1309	-	TRAP dicarboxylate transporter- DctP subunit
1307	 68.68	0	1486907..1488793	+	628	78062160	-	Bcep18194_B1310	-	TRAP dicarboxylate transporter, DctM subunit
1308	 69.28	0	1488816..1489886	+	356	78062161	-	Bcep18194_B1311	-	LacI family transcription regulator
1309	 70.77	+1	1489883..1490905	+	340	78062162	-	Bcep18194_B1312	-	D-isomer specific 2-hydroxyacid dehydrogenase
1310	 71.15	+1	1490902..1491726	+	274	78062163	-	Bcep18194_B1313	-	amidohydrolase 2
1311	 61.24	-1	1492396..1493169	+	257	78062164	-	Bcep18194_B1314	-	hypothetical protein
1312	 64.02	0	1493190..1494323	+	377	78062165	-	Bcep18194_B1315	-	peptidoglycan-binding LysM
1313	 69.24	0	1494418..1495506	-	362	78062166	-	Bcep18194_B1316	-	Sodium/calcium exchanger
1314	 71.55	+1	1496057..1497613	+	518	78062167	-	Bcep18194_B1317	-	3-hydroxybutyryl-CoA dehydrogenase
1315	 68.25	0	1497673..1498995	+	440	78062168	-	Bcep18194_B1318	-	phenylacetate-CoA ligase
1316	 70.16	0	1499034..1499834	+	266	78062169	-	Bcep18194_B1319	-	enoyl-CoA hydratase/isomerase
1317	 64.73	0	1499995..1500666	+	223	78062170	-	Bcep18194_B1320	-	multiple antibiotic resistance (MarC)-related proteins
1318	 65.55	0	1500861..1501841	+	326	78062171	-	Bcep18194_B1321	-	aldo/keto reductase
1319	 73.01	+1	1501862..1502728	-	288	78062172	-	Bcep18194_B1322	-	abortive infection protein
1320	 66.67	0	1502810..1503475	-	221	78062173	-	Bcep18194_B1323	-	hypothetical protein
1321	 67.75	0	1503627..1505564	-	645	78062174	-	Bcep18194_B1324	-	periplasmic sensor signal transduction histidine kinase
1322	 66.38	0	1506012..1507076	-	354	78062175	-	Bcep18194_B1325	-	zinc-containing alcohol dehydrogenase superfamily protein
1323	 72.43	+1	1507424..1508239	-	271	78062176	-	Bcep18194_B1326	-	GCN5-related N-acetyltransferase
1324	 72.38	+1	1508348..1509589	+	413	78062177	-	Bcep18194_B1327	-	major facilitator transporter
1325	 71.04	+1	1509628..1510107	+	159	78062178	-	Bcep18194_B1328	-	hypothetical protein
1326	 68.67	0	1510132..1511376	-	414	78062179	-	Bcep18194_B1329	-	GCN5-related N-acetyltransferase
1327	 72.44	+1	1511537..1513009	+	490	78062180	-	Bcep18194_B1330	-	GntR family transcriptional regulator
1328	 63.40	0	1513114..1513695	+	193	78062181	-	Bcep18194_B1331	-	hypothetical protein
1329	 63.69	0	1513815..1514453	+	212	78062182	-	Bcep18194_B1332	-	hypothetical protein
1330	 70.69	+1	1514897..1516363	+	488	78062183	-	Bcep18194_B1333	-	peptidase S1 and S6, chymotrypsin/Hap
1331	 71.76	+1	1516553..1517809	+	418	78062184	-	Bcep18194_B1334	-	Bcr/CflA subfamily drug resistance transporter
1332	 65.37	0	1517957..1518496	+	179	78062185	-	Bcep18194_B1335	-	hypothetical protein
1333	 70.22	0	1518560..1519318	-	252	78062186	-	Bcep18194_B1336	-	fumarylacetoacetate (FAA) hydrolase
1334	 70.94	+1	1519384..1521186	-	600	78062187	-	Bcep18194_B1337	-	AraC family transcriptional regulator
1335	 72.17	+1	1521297..1521896	-	199	78062188	-	Bcep18194_B1338	-	uracil-DNA glycosylase superfamily protein
1336	 71.56	+1	1522019..1523080	-	353	78062189	-	Bcep18194_B1339	-	ABC-type nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
1337	 69.35	0	1523077..1523673	-	198	78062190	-	Bcep18194_B1340	-	response regulator receiver/ANTAR domain-containing protein
1338	 72.98	+1	1523830..1524684	-	284	78062191	-	Bcep18194_B1341	-	uroporphyrinogen-III C-methyltransferase
1339	 71.49	+1	1524870..1525118	+	82	78062192	-	Bcep18194_B1342	-	hypothetical protein
1340	 68.85	0	1525266..1526591	+	441	78062193	-	Bcep18194_B1343	-	major facilitator transporter
1341	 68.09	0	1526613..1529210	+	865	78062194	-	Bcep18194_B1344	-	nitrite reductase (NAD(P)H), large subunit
1342	 66.38	0	1529249..1529596	+	115	78062195	-	Bcep18194_B1345	-	nitrite reductase (NAD(P)H), small subunit
1343	 70.08	0	1529613..1533800	+	1395	78062196	-	Bcep18194_B1346	-	sulfite reductase (NADPH) alpha subunit
1344	 67.82	0	1533860..1534636	-	258	78062197	-	Bcep18194_B1347	-	short chain dehydrogenase
1345	 71.92	+1	1534641..1535078	-	145	78062198	-	Bcep18194_B1348	-	hypothetical protein
1346	 67.29	0	1535126..1536088	+	320	78062199	-	Bcep18194_B1349	-	LysR family transcriptional regulator
1347	 66.21	0	1536171..1536605	+	144	78062200	-	Bcep18194_B1350	-	hypothetical protein
1348	 70.06	0	1537034..1539628	+	864	78062201	-	Bcep18194_B1351	-	hypothetical protein
1349	 68.07	0	1539625..1540905	+	426	78062202	-	Bcep18194_B1352	-	Type IV secretory pathway VirJ component
1350	 68.74	0	1540984..1541418	-	144	78062203	-	Bcep18194_B1353	-	hypothetical protein
1351	 68.12	0	1541415..1543199	-	594	78062204	-	Bcep18194_B1354	-	nitrite/sulfite reductase, hemoprotein beta-component
1352	 67.68	0	1543401..1543796	-	131	78062205	-	Bcep18194_B1355	-	hypothetical protein
1353	 69.67	0	1543898..1545331	-	477	78062206	-	Bcep18194_B1356	-	GntR family transcriptional regulator
1354	 67.73	0	1545461..1546771	-	436	78062207	-	Bcep18194_B1357	-	major facilitator transporter
1355	 66.29	0	1546843..1547901	-	352	78062208	-	Bcep18194_B1358	-	mannonate dehydratase
1356	 67.91	0	1548177..1548899	+	240	78062209	-	Bcep18194_B1359	-	GntR family transcriptional regulator
1357	 65.43	0	1549061..1550194	+	377	78062210	-	Bcep18194_B1360	-	ABC spermidine/putrescine transporter, periplasmic ligand binding protein
1358	 67.56	0	1550191..1551987	+	598	78062211	-	Bcep18194_B1361	-	diguanylate cyclase
1359	 66.00	0	1552087..1552386	-	99	78062212	-	Bcep18194_B1362	-	hypothetical protein
1360	 69.91	0	1552557..1553018	+	153	78062213	-	Bcep18194_B1363	-	hypothetical protein
1361	 69.35	0	1552979..1554319	-	446	78062214	-	Bcep18194_B1364	-	D-serine dehydratase
1362	 65.50	0	1554414..1555355	+	313	78062215	-	Bcep18194_B1365	-	LysR family transcriptional regulator
1363	 61.70	-1	1555456..1555737	+	93	78062216	-	Bcep18194_B1366	-	hypothetical protein
1364	 65.37	0	1555734..1556582	-	282	78062217	-	Bcep18194_B1367	-	hypothetical protein
1365	 66.78	0	1556885..1557799	+	304	78062218	-	Bcep18194_B1368	-	LysR family transcriptional regulator
1366	 66.67	0	1557971..1558555	+	194	78062219	-	Bcep18194_B1369	-	lysine exporter protein LysE/YggA
1367	 65.11	0	1558628..1559593	-	321	78062220	-	Bcep18194_B1370	-	hypothetical protein
1368	 67.13	0	1559710..1561212	-	500	78062221	-	Bcep18194_B1371	-	aldehyde dehydrogenase
1369	 66.34	0	1561212..1562120	-	302	78062222	-	Bcep18194_B1372	-	dihydrodipicolinate synthetase
1370	 65.84	0	1562202..1563533	-	443	78062223	-	Bcep18194_B1373	-	major facilitator transporter
1371	 67.65	0	1563667..1564986	-	439	78062224	-	Bcep18194_B1374	-	FAD dependent oxidoreductase
1372	 66.39	0	1565072..1565803	-	243	78062225	-	Bcep18194_B1375	-	GntR family transcriptional regulator
1373	 64.58	0	1566038..1566325	-	95	78062226	-	Bcep18194_B1376	-	hypothetical protein
1374	 68.92	0	1566423..1568108	-	561	78062227	-	Bcep18194_B1377	-	metallophosphoesterase
1375	 72.33	+1	1568432..1568731	+	99	78062228	-	Bcep18194_B1378	-	hypothetical protein
1376	 70.25	0	1569069..1569737	+	222	78062229	-	Bcep18194_B1379	-	RNA polymerase sigma factor
1377	 74.10	+1	1569734..1570150	+	138	78062230	-	Bcep18194_B1380	-	hypothetical protein
1378	 68.06	0	1570147..1570650	+	167	78062231	-	Bcep18194_B1381	-	integral membrane protein
1379	 65.55	0	1570800..1571606	-	268	78062232	-	Bcep18194_B1382	-	hypothetical protein
1380	 58.74	-2	1571808..1572173	-	121	78062233	-	Bcep18194_B1383	-	hypothetical protein
1381	 70.58	+1	1572338..1573945	+	535	78062234	-	Bcep18194_B1384	-	hypothetical protein
1382	 72.71	+1	1573948..1575105	+	385	78062235	-	Bcep18194_B1385	-	hypothetical protein
1383	 65.13	0	1575126..1575386	+	86	78062236	-	Bcep18194_B1386	-	hypothetical protein
1384	 63.41	0	1575555..1575953	+	132	78062237	-	Bcep18194_B1387	-	hypothetical protein
1385	 66.55	0	1576365..1578008	+	547	78062238	-	Bcep18194_B1388	-	AMP-dependent synthetase and ligase
1386	 64.95	0	1578029..1578493	+	154	78062239	-	Bcep18194_B1389	-	MaoC-like dehydratase
1387	 66.67	0	1578541..1580244	+	567	78062240	-	Bcep18194_B1390	-	Poly-beta-hydroxybutyrate polymerase
1388	 63.37	0	1580228..1580743	+	171	78062241	-	Bcep18194_B1391	-	phasin
1389	 72.74	+1	1580730..1581635	+	301	78062242	-	Bcep18194_B1392	-	Poly(3-hydroxyalkanoate) depolymerase
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.