IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1181	 62.41	-1	1332504..1333772	+	422	78062034	-	Bcep18194_B1184	-	flavin-dependent oxidoreductase
1182	 64.89	0	1333769..1334614	+	281	78062035	-	Bcep18194_B1185	-	Alpha/beta hydrolase
1183	 66.04	0	1334695..1335489	+	264	78062036	-	Bcep18194_B1186	-	4-oxalocrotonate decarboxylase
1184	 64.27	0	1335568..1336527	+	319	78062037	-	Bcep18194_B1187	-	acetaldehyde dehydrogenase
1185	 65.07	0	1336527..1337594	+	355	78062038	-	Bcep18194_B1188	-	4-hydroxy-2-ketovalerate aldolase
1186	 62.16	-1	1338428..1339204	+	258	78062039	-	Bcep18194_B1189	-	Short-chain dehydrogenase/reductase SDR
1187	 61.76	-1	1339511..1340590	+	359	78062040	-	Bcep18194_B1190	-	outer membrane protein (porin)
1188	 60.30	-1	1340720..1341379	+	219	78062041	-	Bcep18194_B1191	-	TetR family transcriptional regulator
1189	 63.83	0	1341468..1342418	-	316	78062042	-	Bcep18194_B1192	-	LysR family transcriptional regulator
1190	 65.20	0	1343393..1344553	+	386	78062043	-	Bcep18194_B1193	-	HlyD family secretion protein
1191	 63.39	0	1344565..1347708	+	1047	78062044	-	Bcep18194_B1194	-	hydrophobe/amphiphile efflux pump protein
1192	 68.05	0	1347721..1349169	+	482	78062045	-	Bcep18194_B1195	-	RND efflux system outer membrane lipoprotein
1193	 63.84	0	1349229..1349936	+	235	78062046	-	Bcep18194_B1196	-	TetR family transcriptional regulator
1194	 64.12	0	1349977..1350525	+	182	78062047	-	Bcep18194_B1197	-	MarR family transcriptional regulator
1195	 64.57	0	1350698..1351744	-	348	78062048	-	Bcep18194_B1198	-	AraC family transcriptional regulator
1196	 65.04	0	1351842..1352825	+	327	78062049	-	Bcep18194_B1199	-	zinc-containing alcohol dehydrogenase superfamily protein
1197	 63.73	0	1352863..1353576	+	237	78062050	-	Bcep18194_B1200	-	DSBA oxidoreductase
1198	 65.60	0	1353573..1354040	+	155	78062051	-	Bcep18194_B1201	-	hypothetical protein
1199	 65.10	0	1354669..1355754	+	361	78062052	-	Bcep18194_B1202	-	outer membrane protein (porin)
1200	 67.52	0	1355788..1356603	+	271	78062053	-	Bcep18194_B1203	-	short chain dehydrogenase
1201	 69.07	0	1356856..1358853	+	665	78062054	-	Bcep18194_B1204	-	hydantoinase/oxoprolinase
1202	 65.16	0	1358853..1359317	+	154	78062055	-	Bcep18194_B1205	-	acetone carboxylase gamma subunit-like
1203	 66.30	0	1359289..1361466	+	725	78062056	-	Bcep18194_B1206	-	5-oxoprolinase (ATP-hydrolyzing)
1204	 64.71	0	1361481..1363727	+	748	78062057	-	Bcep18194_B1207	-	hydantoinase B/oxoprolinase
1205	 70.06	0	1363850..1364704	+	284	78062058	-	Bcep18194_B1208	-	hypothetical protein
1206	 67.77	0	1364698..1366695	+	665	78062059	-	Bcep18194_B1209	-	acetoacetyl-CoA synthetase
1207	 67.38	0	1366938..1369607	+	889	78062060	-	Bcep18194_B1210	-	ATP-dependent transcription regulator LuxR
1208	 66.88	0	1369774..1370706	-	310	78062061	-	Bcep18194_B1211	-	alpha/beta fold family hydrolase
1209	 68.57	0	1370911..1371804	+	297	78062062	-	Bcep18194_B1212	-	LysR family transcriptional regulator
1210	 67.63	0	1372269..1373198	+	309	78062063	-	Bcep18194_B1213	-	lipolytic protein
1211	 68.20	0	1373264..1374175	+	303	78062064	-	Bcep18194_B1214	-	3-hydroxyisobutyrate dehydrogenase
1212	 68.51	0	1374212..1375024	-	270	78062065	-	Bcep18194_B1215	-	IclR family transcriptional regulator
1213	 69.77	0	1375040..1375909	-	289	78062066	-	Bcep18194_B1216	-	IclR family transcriptional regulator
1214	 69.01	0	1376034..1376972	-	312	78062067	-	Bcep18194_B1217	-	esterase/lipase/thioesterase
1215	 70.96	+1	1377138..1377929	-	263	78062068	-	Bcep18194_B1218	-	Short-chain dehydrogenase/reductase SDR
1216	 68.59	0	1377987..1378559	-	190	78062069	-	Bcep18194_B1219	-	hypothetical protein
1217	 65.22	0	1378805..1380463	+	552	78062070	-	Bcep18194_B1220	-	flavin-containing monooxygenase FMO
1218	 69.00	0	1380460..1381230	+	256	78062071	-	Bcep18194_B1221	-	Short-chain dehydrogenase/reductase SDR
1219	 65.25	0	1381346..1382548	-	400	78062072	-	Bcep18194_B1222	-	alkane 1-monooxygenase
1220	 68.22	0	1382584..1383615	-	343	78062073	-	Bcep18194_B1223	-	oxidoreductase
1221	 64.29	0	1383751..1384758	+	335	78062074	-	Bcep18194_B1224	-	AraC family transcriptional regulator
1222	 65.87	0	1384897..1385523	-	208	78062075	-	Bcep18194_B1225	-	TetR family transcriptional regulator
1223	 65.22	0	1385848..1386192	+	114	78062076	-	Bcep18194_B1226	-	histone-like nucleoid-structuring protein H-NS
1224	 68.48	0	1386207..1386869	-	220	78062077	-	Bcep18194_B1227	-	transcriptional regulator
1225	 67.74	0	1387193..1388404	+	403	78062078	-	Bcep18194_B1228	-	hypothetical protein
1226	 66.93	0	1388487..1389245	-	252	78062079	-	Bcep18194_B1229	-	Short-chain dehydrogenase/reductase SDR
1227	 67.97	0	1389379..1390377	-	332	78062080	-	Bcep18194_B1230	-	LysR family transcriptional regulator
1228	 69.05	0	1390490..1391704	+	404	78062081	-	Bcep18194_B1231	-	salicylate 1-monooxygenase
1229	 70.51	0	1391849..1392784	-	311	78062082	-	Bcep18194_B1232	-	putative esterase
1230	 69.58	0	1392846..1393943	-	365	78062083	-	Bcep18194_B1233	-	hypothetical protein
1231	 64.42	0	1394326..1395480	+	384	78062084	-	Bcep18194_B1234	-	outer membrane protein (porin)
1232	 69.30	0	1395526..1396437	-	303	78062085	-	Bcep18194_B1235	-	LysR family transcriptional regulator
1233	 69.12	0	1396577..1397593	+	338	78062086	-	Bcep18194_B1236	-	aldo/keto reductase
1234	 69.40	0	1398020..1398823	+	267	78062087	-	Bcep18194_B1237	-	hypothetical protein
1235	 65.24	0	1398929..1401097	-	722	78062088	-	Bcep18194_B1238	-	hypothetical protein
1236	 65.21	0	1401630..1402454	-	274	78062089	-	Bcep18194_B1239	-	hypothetical protein
1237	 61.67	-1	1402557..1402976	-	139	78062090	-	Bcep18194_B1240	-	phenylacetic acid degradation-related protein
1238	 59.65	-2	1403169..1403624	+	151	78062091	-	Bcep18194_B1241	-	MarR family transcriptional regulator
1239	 61.38	-1	1403801..1404916	+	371	78062092	-	Bcep18194_B1242	-	NADH-flavin oxidoreductase/NADH oxidase
1240	 68.12	0	1405126..1406022	-	298	78062093	-	Bcep18194_B1243	-	LysR family transcriptional regulator
1241	 68.64	0	1406555..1407415	+	286	78062094	-	Bcep18194_B1244	-	peptidase M23B
1242	 71.37	+1	1407527..1408525	+	332	78062095	-	Bcep18194_B1245	-	Beta-lactamase
1243	 67.70	0	1408632..1409504	+	290	78062096	-	Bcep18194_B1246	-	LysR family transcriptional regulator
1244	 66.10	0	1409663..1410016	+	117	78062097	-	Bcep18194_B1247	-	hypothetical protein
1245	 69.02	0	1410238..1410492	-	84	78062098	-	Bcep18194_B1248	-	transglycosylase-associated protein
1246	 70.40	0	1410621..1411397	-	258	78062099	-	Bcep18194_B1249	-	dipeptide/oligopeptide/nickel ABC transporter ATPase
1247	 71.48	+1	1411394..1412308	-	304	78062100	-	Bcep18194_B1250	-	dipeptide/oligopeptide/nickel ABC transporter ATPase
1248	 70.16	0	1412310..1413224	-	304	78062101	-	Bcep18194_B1251	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1249	 67.88	0	1413291..1414361	-	356	78062102	-	Bcep18194_B1252	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
1250	 64.54	0	1414372..1415973	-	533	78062103	-	Bcep18194_B1253	-	ABC peptide transporter, periplasmic ligand binding protein
1251	 70.04	0	1416044..1416607	-	187	78062104	-	Bcep18194_B1254	-	D-alanyl-D-alanine dipeptidase
1252	 67.67	0	1416632..1417531	-	299	78062105	-	Bcep18194_B1255	-	RpiR family transcriptional regulator
1253	 65.16	0	1418095..1419351	+	418	78062106	-	Bcep18194_B1256	-	glucose-6-phosphate isomerase and related metalloenzyme
1254	 69.95	0	1419436..1420743	+	435	78062107	-	Bcep18194_B1257	-	manganese transporter NRAMP
1255	 65.69	0	1420899..1422530	-	543	78062108	-	Bcep18194_B1258	-	ABC peptide transporter, periplasmic ligand binding protein
1256	 65.97	0	1422625..1423197	-	190	78062109	-	Bcep18194_B1259	-	hypothetical protein
1257	 63.03	-1	1423216..1423545	-	109	78062110	-	Bcep18194_B1260	-	hypothetical protein
1258	 66.47	0	1423721..1425280	-	519	78062111	-	Bcep18194_B1261	-	EmrB/QacA family drug resistance transporter
1259	 69.55	0	1425699..1426601	-	300	78062112	-	Bcep18194_B1262	-	LysR family transcriptional regulator
1260	 72.18	+1	1426747..1428777	+	676	78062113	-	Bcep18194_B1263	-	fusaric acid resistance protein
1261	 67.86	0	1428814..1429734	-	306	78062114	-	Bcep18194_B1264	-	hypothetical protein
1262	 67.40	0	1429747..1432071	-	774	78062115	-	Bcep18194_B1265	-	oxidoreductase alpha (molybdopterin) subunit
1263	 67.86	0	1432227..1433648	+	473	78062116	-	Bcep18194_B1266	-	GntR family transcriptional regulator
1264	 66.03	0	1433703..1434953	-	416	78062117	-	Bcep18194_B1267	-	MscS mechanosensitive ion channel
1265	 69.15	0	1435189..1437165	+	658	78062118	-	Bcep18194_B1268	-	sulphate transporter
1266	 72.60	+1	1437178..1438053	-	291	78062119	-	Bcep18194_B1269	-	LysR family transcriptional regulator
1267	 69.74	0	1438065..1438748	+	227	78062120	-	Bcep18194_B1270	-	putative threonine efflux protein-like
1268	 70.72	+1	1438845..1440299	-	484	78062121	-	Bcep18194_B1271	-	EmrB/QacA family drug resistance transporter
1269	 69.33	0	1440296..1440859	-	187	78062122	-	Bcep18194_B1272	-	isochorismatase hydrolase
1270	 69.74	0	1440927..1441382	-	151	78062123	-	Bcep18194_B1273	-	MarR family transcriptional regulator
1271	 68.38	0	1441455..1441688	-	77	78062124	-	Bcep18194_B1274	-	hypothetical protein
1272	 69.68	0	1441732..1442826	-	364	78062125	-	Bcep18194_B1275	-	murein-DD-endopeptidase
1273	 63.91	0	1443080..1444060	+	326	78062126	-	Bcep18194_B1276	-	hypothetical protein
1274	 65.05	0	1444127..1444435	-	102	78062127	-	Bcep18194_B1277	-	hypothetical protein
1275	 68.61	0	1444487..1445362	+	291	78062128	-	Bcep18194_B1278	-	LysR family transcriptional regulator
1276	 68.07	0	1445462..1445746	+	94	78062129	-	Bcep18194_B1279	-	hypothetical protein
1277	 65.99	0	1445805..1446548	-	247	78062130	-	Bcep18194_B1280	-	hypothetical protein
1278	 65.80	0	1446629..1449394	-	921	78062131	-	Bcep18194_B1281	-	magnesium-translocating P-type ATPase
1279	 69.87	0	1449442..1449753	-	103	78062132	-	Bcep18194_B1282	-	hypothetical protein
1280	 70.18	0	1450107..1451759	-	550	78062133	-	Bcep18194_B1283	-	peptidase MprA
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.