IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
69	 65.19	0	78461..78934	+	157	78060922	-	Bcep18194_B0069	-	hypothetical protein
70	 68.41	0	79048..79908	-	286	78060923	-	Bcep18194_B0070	-	LysR family transcriptional regulator
71	 69.93	0	80094..80768	+	224	78060924	-	Bcep18194_B0071	-	ankyrin repeat-containing protein
72	 61.25	-1	80796..81275	-	159	78060925	-	Bcep18194_B0072	-	XRE family transcriptional regulator
73	 65.92	0	81765..82568	+	267	78060926	-	Bcep18194_B0073	-	ABC amino acid transporter, periplasmic ligand binding protein
74	 67.49	0	82600..83448	+	282	78060927	-	Bcep18194_B0074	-	phytanoyl-CoA dioxygenase
75	 66.80	0	83532..84269	-	245	78060928	-	Bcep18194_B0075	-	histidine utilization repressor
76	 62.80	-1	84300..84842	-	180	78060929	-	Bcep18194_B0076	-	XRE family transcriptional regulator
77	 66.67	0	84977..85759	+	260	78060930	-	Bcep18194_B0077	-	hypothetical protein
78	 68.56	0	85810..86706	+	298	78060931	-	Bcep18194_B0078	-	dihydrodipicolinate synthase
79	 69.49	0	86703..87410	+	235	78060932	-	Bcep18194_B0079	-	MOSC family protein
80	 69.67	0	87432..88196	-	254	78060933	-	Bcep18194_B0080	-	short chain dehydrogenase
81	 67.94	0	88578..89285	+	235	78060934	-	Bcep18194_B0081	-	hypothetical protein
82	 66.90	0	89375..90643	-	422	78060935	-	Bcep18194_B0082	-	hypothetical protein
83	 62.41	-1	90643..91065	-	140	78060936	-	Bcep18194_B0083	-	hypothetical protein
84	 67.93	0	91095..91805	-	236	78060937	-	Bcep18194_B0084	-	hypothetical protein
85	 66.36	0	92050..93366	+	438	78060938	-	Bcep18194_B0085	-	triacylglycerol lipase
86	 68.08	0	93560..94690	+	376	78060939	-	Bcep18194_B0086	-	phospho-2-dehydro-3-deoxyheptonate aldolase
87	 67.90	0	94707..95681	+	324	78060940	-	Bcep18194_B0087	-	hypothetical protein
88	 65.73	0	95856..96284	+	142	78060941	-	Bcep18194_B0088	-	hypothetical protein
89	 70.16	0	96340..96855	-	171	78060942	-	Bcep18194_B0089	-	OsmC-like protein
90	 67.33	0	96881..97636	-	251	78060943	-	Bcep18194_B0090	-	NAD-dependent epimerase/dehydratase
91	 66.38	0	97842..98903	-	353	78060944	-	Bcep18194_B0091	-	LysR family transcriptional regulator
92	 65.19	0	98966..99370	-	134	78060945	-	Bcep18194_B0092	-	hypothetical protein
93	 62.92	-1	99447..99926	-	159	78060946	-	Bcep18194_B0093	-	alkylhydroperoxidase AhpD core
94	 67.01	0	100133..101017	-	294	78060947	-	Bcep18194_B0094	-	sigma-24 (FecI-like)
95	 68.16	0	101014..101814	-	266	78060948	-	Bcep18194_B0095	-	diaminopimelate epimerase
96	 67.47	0	102140..103630	+	496	78060949	-	Bcep18194_B0096	-	Sodium/alanine symporter
97	 66.38	0	104056..106134	+	692	78060950	-	Bcep18194_B0097	-	carbon starvation protein CstA
98	 65.70	0	106147..106353	+	68	78060951	-	Bcep18194_B0098	-	hypothetical protein
99	 65.22	0	106548..107168	+	206	78060952	-	Bcep18194_B0099	-	hemolysin HylII family protein
100	 72.28	+1	107228..108634	-	468	78060953	-	Bcep18194_B0100	-	major facilitator transporter
101	 68.00	0	108631..109080	-	149	78060954	-	Bcep18194_B0101	-	hypothetical protein
102	 63.02	-1	109180..109590	-	136	78060955	-	Bcep18194_B0102	-	aromatic ring-cleaving dioxygenase-like
103	 65.08	0	110026..110403	+	125	78060956	-	Bcep18194_B0103	-	hypothetical protein
104	 69.73	0	110627..111115	+	162	78060957	-	Bcep18194_B0104	-	hypothetical protein
105	 63.14	-1	111346..112506	-	386	78060958	-	Bcep18194_B0105	-	radical SAM oxidoreductase
106	 64.44	0	112519..113460	-	313	78060959	ispH	Bcep18194_B0106	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
107	 71.72	+1	113863..115050	+	395	78060960	-	Bcep18194_B0107	-	glycosyl transferase family protein
108	 71.54	+1	115168..116625	-	485	78060961	-	Bcep18194_B0108	-	hypothetical protein
109	 69.84	0	116734..117741	-	335	78060962	-	Bcep18194_B0109	-	NAD-dependent epimerase/dehydratase
110	 68.87	0	117897..118214	+	105	78060963	-	Bcep18194_B0110	-	acylphosphatase
111	 69.67	0	118231..119130	+	299	78060964	-	Bcep18194_B0111	-	RarD protein
112	 69.78	0	119528..120652	+	374	78060965	-	Bcep18194_B0112	-	hypothetical protein
113	 65.29	0	121026..122546	-	506	78060966	-	Bcep18194_B0113	-	amino acid/peptide transporter
114	 62.71	-1	123046..123627	+	193	78060967	-	Bcep18194_B0114	-	XRE family transcriptional regulator
115	 63.81	0	123807..125417	+	536	78060968	-	Bcep18194_B0115	-	dipeptide/oligopeptide/nickel ABC periplasmic ligand-binding protein
116	 66.56	0	125429..126367	+	312	78060969	-	Bcep18194_B0116	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
117	 68.00	0	126381..127283	+	300	78060970	-	Bcep18194_B0117	-	dipeptide/oligopeptide/nickel ABC transporter inner membrane protein
118	 68.98	0	127285..128277	+	330	78060971	-	Bcep18194_B0118	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
119	 68.43	0	128274..129293	+	339	78060972	-	Bcep18194_B0119	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
120	 64.56	0	129495..130919	+	474	78060973	-	Bcep18194_B0120	-	outer membrane porin
121	 69.48	0	130974..131969	-	331	78060974	-	Bcep18194_B0121	-	DedA family protein
122	 68.89	0	132124..132393	-	89	78060975	-	Bcep18194_B0122	-	hypothetical protein
123	 69.40	0	132663..135002	-	779	78060976	-	Bcep18194_B0123	-	phospholipase C
124	 65.07	0	135580..136080	+	166	78060977	-	Bcep18194_B0124	-	GCN5-related N-acetyltransferase
125	 68.94	0	136278..137948	+	556	78060978	-	Bcep18194_B0125	-	hypothetical protein
126	 65.94	0	137978..138388	+	136	78060979	-	Bcep18194_B0126	-	5-carboxymethyl-2-hydroxymuconate isomerase
127	 67.80	0	138466..138729	-	87	78060980	-	Bcep18194_B0127	-	hypothetical protein
128	 66.10	0	138977..140380	-	467	78060981	-	Bcep18194_B0128	-	H+/gluconate symporter family protein
129	 69.37	0	140697..142175	+	492	78060982	-	Bcep18194_B0129	-	sigma-54 dependent trancsriptional regulator
130	 65.72	0	142230..142757	+	175	78060983	-	Bcep18194_B0130	-	hypothetical protein
131	 61.17	-1	142819..143091	+	90	78060984	-	Bcep18194_B0131	-	hypothetical protein
132	 61.33	-1	143195..143494	+	99	78060985	-	Bcep18194_B0132	-	histone-like nucleoid-structuring protein H-NS
133	 60.00	-1	143571..143840	+	89	78060986	-	Bcep18194_B0133	-	hypothetical protein
134	 69.51	0	144098..146455	+	785	78060987	-	Bcep18194_B0134	-	GCN5-related N-acetyltransferase
135	 61.78	-1	147149..147700	-	183	78060988	-	Bcep18194_B0135	-	hypothetical protein
136	 67.18	0	147875..148648	-	257	78060989	-	Bcep18194_B0136	-	IclR family transcriptional regulator
137	 67.49	0	149361..150209	+	282	78060990	-	Bcep18194_B0137	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
138	 66.41	0	150342..150725	-	127	78060991	-	Bcep18194_B0138	-	glyoxalase/bleomycin resistance protein/dioxygenase
139	 68.28	0	151005..151625	+	206	78060992	-	Bcep18194_B0139	-	hypothetical protein
140	 71.51	+1	151658..153640	-	660	78060993	-	Bcep18194_B0140	-	sigma-54 dependent trancsriptional regulator
141	 66.00	0	153811..154704	+	297	78060994	prpB	Bcep18194_B0141	-	2-methylisocitrate lyase
142	 64.45	0	154917..156089	+	390	78060995	-	Bcep18194_B0142	-	methylcitrate synthase
143	 67.90	0	156169..158763	+	864	78060996	-	Bcep18194_B0143	-	aconitate hydratase
144	 68.85	0	158790..159980	+	396	78060997	-	Bcep18194_B0144	-	methylitaconate delta2-delta3-isomerase
145	 72.10	+1	160039..160977	-	312	78060998	-	Bcep18194_B0145	-	esterase/lipase/thioesterase
146	 68.31	0	161011..162165	-	384	78060999	-	Bcep18194_B0146	-	Acyl-CoA dehydrogenase
147	 69.16	0	162205..163527	-	440	78061000	-	Bcep18194_B0147	-	major facilitator transporter
148	 66.95	0	163538..164590	-	350	78061001	-	Bcep18194_B0148	-	outer membrane protein (porin)
149	 70.41	0	164675..165475	-	266	78061002	-	Bcep18194_B0149	-	short chain enoyl-CoA hydratase
150	 69.53	0	165472..166692	-	406	78061003	-	Bcep18194_B0150	-	L-carnitine dehydratase/bile acid-inducible protein F
151	 68.97	0	166757..167539	-	260	78061004	-	Bcep18194_B0151	-	enoyl-CoA hydratase
152	 68.10	0	167674..168441	+	255	78061005	-	Bcep18194_B0152	-	IclR family transcriptional regulator
153	 71.23	+1	168528..169580	+	350	78061006	-	Bcep18194_B0153	-	L-carnitine dehydratase/bile acid-inducible protein F
154	 57.83	-2	169722..169970	+	82	78061007	-	Bcep18194_B0154	-	prevent-host-death protein
155	 60.68	-1	170008..170241	+	77	78061008	-	Bcep18194_B0155	-	plasmid stabilization system protein
156	 66.67	0	170359..170802	-	147	78061009	-	Bcep18194_B0156	-	phenylacetic acid degradation-related protein
157	 70.86	+1	171073..172692	+	539	78061010	-	Bcep18194_B0157	-	methyl-accepting chemotaxis sensory transducer
158	 71.89	+1	172665..173774	-	369	78061011	-	Bcep18194_B0158	-	N-acylglucosamine 2-epimerase
159	 69.68	0	174615..176105	+	496	78061012	-	Bcep18194_B0159	-	hypothetical protein
160	 67.08	0	176594..177073	+	159	78061013	-	Bcep18194_B0161	-	GCN5-related N-acetyltransferase
161	 71.69	+1	177235..180357	-	1040	78061014	-	Bcep18194_B0162	-	copper-translocating P-type ATPase
162	 67.59	0	180545..180868	-	107	78061015	-	Bcep18194_B0163	-	HicB family protein
163	 58.62	-2	180882..181142	-	86	78061016	-	Bcep18194_B0164	-	hypothetical protein
164	 71.33	+1	181455..182891	+	478	78061017	-	Bcep18194_B0165	-	hypothetical protein
165	 67.46	0	183040..186834	+	1264	78061018	-	Bcep18194_B0166	-	hypothetical protein
166	 65.78	0	186894..187118	-	74	78061019	-	Bcep18194_B0167	-	hypothetical protein
167	 66.61	0	187436..189109	+	557	78061020	-	Bcep18194_B0168	-	Type I phosphodiesterase/nucleotide pyrophosphatase
168	 68.74	0	189194..190447	-	417	78061021	-	Bcep18194_B0169	-	hypothetical protein
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.