IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1107	 66.42	0	1247684..1248481	+	265	78061960	-	Bcep18194_B1110	-	short chain dehydrogenase
1108	 67.69	0	1248474..1250141	+	555	78061961	-	Bcep18194_B1111	-	hypothetical protein
1109	 71.57	+1	1250134..1250949	+	271	78061962	-	Bcep18194_B1112	-	L-aspartate dehydrogenase
1110	 67.87	0	1251022..1252512	+	496	78061963	-	Bcep18194_B1113	-	betaine-aldehyde dehydrogenase
1111	 65.94	0	1252531..1253493	+	320	78061964	-	Bcep18194_B1114	-	glyoxalase/bleomycin resistance protein/dioxygenase
1112	 68.19	0	1253490..1254734	+	414	78061965	-	Bcep18194_B1115	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1113	 67.24	0	1254764..1256164	+	466	78061966	-	Bcep18194_B1116	-	major facilitator transporter
1114	 67.21	0	1256344..1256895	+	183	78061967	-	Bcep18194_B1117	-	GCN5-related N-acetyltransferase
1115	 65.91	0	1256911..1257309	-	132	78061968	-	Bcep18194_B1118	-	endoribonuclease L-PSP
1116	 68.93	0	1257406..1258332	-	308	78061969	-	Bcep18194_B1119	-	ADP-ribosylation/crystallin J1
1117	 63.16	-1	1258509..1258736	+	75	78061970	-	Bcep18194_B1120	-	hypothetical protein
1118	 68.59	0	1258931..1260598	+	555	78061971	-	Bcep18194_B1121	-	hydroxylamine reductase
1119	 70.48	0	1260612..1261634	+	340	78061972	-	Bcep18194_B1122	-	oxidoreductase
1120	 70.77	+1	1261728..1262141	+	137	78061973	-	Bcep18194_B1123	-	hypothetical protein
1121	 63.74	0	1262218..1262730	+	170	78061974	-	Bcep18194_B1124	-	hypothetical protein
1122	 65.24	0	1262852..1265437	-	861	78061975	-	Bcep18194_B1125	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1123	 67.72	0	1265800..1266555	+	251	78061976	-	Bcep18194_B1126	-	hypothetical protein
1124	 65.82	0	1266577..1267050	-	157	78061977	-	Bcep18194_B1127	-	hypothetical protein
1125	 65.01	0	1267275..1268663	+	462	78061978	-	Bcep18194_B1128	-	hypothetical protein
1126	 66.00	0	1268732..1269031	-	99	78061979	-	Bcep18194_B1129	-	hypothetical protein
1127	 65.75	0	1269605..1270039	-	144	78061980	-	Bcep18194_B1130	-	hypothetical protein
1128	 71.52	+1	1270407..1271891	+	494	78061981	-	Bcep18194_B1131	-	amidase
1129	 70.20	0	1272407..1273171	+	254	78061982	-	Bcep18194_B1132	-	hypothetical protein
1130	 67.51	0	1273293..1274123	+	276	78061983	-	Bcep18194_B1133	-	N-hydroxyarylamine O-acetyltransferase
1131	 64.97	0	1274215..1274391	+	58	78061984	-	Bcep18194_B1134	-	helix-turn-helix protein, CopG
1132	 66.10	0	1274393..1274743	+	116	78061985	-	Bcep18194_B1135	-	hypothetical protein
1133	 70.86	+1	1274751..1275608	+	285	78061986	-	Bcep18194_B1136	-	protein of unknown function Mtu_121
1134	 67.76	0	1275640..1280481	-	1613	78061987	-	Bcep18194_B1137	-	glutamate dehydrogenase (NAD)
1135	 62.43	-1	1280674..1280862	-	62	78061988	-	Bcep18194_B1138	-	4-oxalocrotonate tautomerase
1136	 69.11	0	1280914..1281690	-	258	78061989	-	Bcep18194_B1139	-	hypothetical protein
1137	 73.60	+1	1281665..1282558	-	297	78061990	-	Bcep18194_B1140	-	Urea transporter
1138	 70.02	0	1282814..1283380	+	188	78061991	-	Bcep18194_B1141	-	hypothetical protein
1139	 71.21	+1	1283329..1284252	-	307	78061992	-	Bcep18194_B1142	-	Alpha/beta hydrolase
1140	 64.35	0	1284257..1285162	-	301	78061993	-	Bcep18194_B1143	-	metal-dependent hydrolase
1141	 66.45	0	1285159..1286082	-	307	78061994	-	Bcep18194_B1144	-	Short-chain dehydrogenase/reductase SDR
1142	 67.30	0	1286104..1287693	-	529	78061995	-	Bcep18194_B1145	-	flavin-containing monooxygenase FMO
1143	 70.99	+1	1287940..1288680	-	246	78061996	-	Bcep18194_B1146	-	membrane protein, YhhN-like
1144	 67.29	0	1288977..1289945	+	322	78061997	-	Bcep18194_B1147	-	agmatinase
1145	 66.59	0	1290186..1291475	-	429	78061998	-	Bcep18194_B1148	-	citrate synthase
1146	 67.09	0	1291579..1293012	+	477	78061999	-	Bcep18194_B1149	-	L-carnitine dehydratase/bile acid-inducible protein F
1147	 59.11	-2	1293359..1293583	-	74	78062000	-	Bcep18194_B1150	-	hypothetical protein
1148	 54.41	-2	1293861..1294064	-	67	78062001	-	Bcep18194_B1151	-	cold-shock DNA-binding protein family protein
1149	 66.87	0	1294575..1295555	-	326	78062002	-	Bcep18194_B1152	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1150	 67.02	0	1295679..1296518	-	279	78062003	-	Bcep18194_B1153	-	MerR family transcriptional regulator
1151	 72.01	+1	1296528..1297088	-	186	78062004	-	Bcep18194_B1154	-	GCN5-related N-acetyltransferase
1152	 73.44	+1	1297176..1298090	-	304	78062005	-	Bcep18194_B1155	-	LysR family transcriptional regulator
1153	 72.17	+1	1298175..1299173	+	332	78062006	-	Bcep18194_B1156	-	zinc-containing alcohol dehydrogenase superfamily protein
1154	 68.25	0	1299233..1300747	-	504	78062007	-	Bcep18194_B1157	-	EmrB/QacA family drug resistance transporter
1155	 69.42	0	1300978..1302537	+	519	78062008	-	Bcep18194_B1158	-	methyl-accepting chemotaxis sensory transducer
1156	 69.48	0	1302594..1304261	-	555	78062009	-	Bcep18194_B1159	-	hypothetical protein
1157	 67.02	0	1304394..1305248	-	284	78062010	-	Bcep18194_B1160	-	response regulator receiver protein
1158	 69.74	0	1305473..1306807	+	444	78062011	-	Bcep18194_B1161	-	FAD dependent oxidoreductase
1159	 65.03	0	1306824..1307984	+	386	78062012	-	Bcep18194_B1162	-	TrkA-like protein
1160	 59.86	-1	1309147..1309425	-	92	78062013	-	Bcep18194_B1163	-	transposase IS3/IS911
1161	 49.58	-2	1310155..1310997	+	280	78062014	-	Bcep18194_B1164	-	hypothetical protein
1162	 50.68	-2	1311051..1312082	+	343	78062015	-	Bcep18194_B1165	-	hypothetical protein
1163	 50.92	-2	1312079..1313380	+	433	78062016	-	Bcep18194_B1166	-	major facilitator transporter
1164	 54.08	-2	1313509..1314120	-	203	78062017	-	Bcep18194_B1167	-	ATP-dependent Clp protease proteolytic subunit
1165	 62.73	-1	1315038..1316408	-	456	78062018	-	Bcep18194_B1168	-	MmgE/PrpD family protein
1166	 65.57	0	1316486..1318120	-	544	78062019	-	Bcep18194_B1169	-	glucose-methanol-choline oxidoreductase
1167	 65.24	0	1318168..1319634	-	488	78062020	-	Bcep18194_B1170	-	aldehyde dehydrogenase
1168	 63.80	0	1319657..1320145	-	162	78062021	-	Bcep18194_B1171	-	hypothetical protein
1169	 61.07	-1	1320453..1321310	+	285	78062022	-	Bcep18194_B1172	-	LuxR family transcriptional regulator
1170	 61.52	-1	1321411..1321974	-	187	78062023	-	Bcep18194_B1173	-	hypothetical protein
1171	 64.69	0	1322337..1323095	-	252	78062024	-	Bcep18194_B1174	-	Short-chain dehydrogenase/reductase SDR
1172	 66.46	0	1323501..1324469	-	322	78062025	-	Bcep18194_B1175	-	AraC family transcriptional regulator
1173	 68.18	0	1324681..1325541	+	286	78062026	-	Bcep18194_B1176	-	Short-chain dehydrogenase/reductase SDR
1174	 66.21	0	1325588..1326454	+	288	78062027	-	Bcep18194_B1177	-	Short-chain dehydrogenase/reductase SDR
1175	 67.71	0	1326567..1327427	-	286	78062028	-	Bcep18194_B1178	-	Short-chain dehydrogenase/reductase SDR
1176	 62.43	-1	1328168..1329040	-	290	78062029	-	Bcep18194_B1179	-	TetR family transcriptional regulator
1177	 64.26	0	1329137..1329634	-	165	78062030	-	Bcep18194_B1180	-	flavin reductase-like, FMN-binding
1178	 64.24	0	1329874..1330533	+	219	78062031	-	Bcep18194_B1181	-	ferredoxin
1179	 64.87	0	1330561..1331505	+	314	78062032	-	Bcep18194_B1182	-	catechol 2,3-dioxygenase
1180	 65.83	0	1331596..1332435	+	279	78062033	-	Bcep18194_B1183	-	Alpha/beta hydrolase
1181	 62.41	-1	1332504..1333772	+	422	78062034	-	Bcep18194_B1184	-	flavin-dependent oxidoreductase
1182	 64.89	0	1333769..1334614	+	281	78062035	-	Bcep18194_B1185	-	Alpha/beta hydrolase
1183	 66.04	0	1334695..1335489	+	264	78062036	-	Bcep18194_B1186	-	4-oxalocrotonate decarboxylase
1184	 64.27	0	1335568..1336527	+	319	78062037	-	Bcep18194_B1187	-	acetaldehyde dehydrogenase
1185	 65.07	0	1336527..1337594	+	355	78062038	-	Bcep18194_B1188	-	4-hydroxy-2-ketovalerate aldolase
1186	 62.16	-1	1338428..1339204	+	258	78062039	-	Bcep18194_B1189	-	Short-chain dehydrogenase/reductase SDR
1187	 61.76	-1	1339511..1340590	+	359	78062040	-	Bcep18194_B1190	-	outer membrane protein (porin)
1188	 60.30	-1	1340720..1341379	+	219	78062041	-	Bcep18194_B1191	-	TetR family transcriptional regulator
1189	 63.83	0	1341468..1342418	-	316	78062042	-	Bcep18194_B1192	-	LysR family transcriptional regulator
1190	 65.20	0	1343393..1344553	+	386	78062043	-	Bcep18194_B1193	-	HlyD family secretion protein
1191	 63.39	0	1344565..1347708	+	1047	78062044	-	Bcep18194_B1194	-	hydrophobe/amphiphile efflux pump protein
1192	 68.05	0	1347721..1349169	+	482	78062045	-	Bcep18194_B1195	-	RND efflux system outer membrane lipoprotein
1193	 63.84	0	1349229..1349936	+	235	78062046	-	Bcep18194_B1196	-	TetR family transcriptional regulator
1194	 64.12	0	1349977..1350525	+	182	78062047	-	Bcep18194_B1197	-	MarR family transcriptional regulator
1195	 64.57	0	1350698..1351744	-	348	78062048	-	Bcep18194_B1198	-	AraC family transcriptional regulator
1196	 65.04	0	1351842..1352825	+	327	78062049	-	Bcep18194_B1199	-	zinc-containing alcohol dehydrogenase superfamily protein
1197	 63.73	0	1352863..1353576	+	237	78062050	-	Bcep18194_B1200	-	DSBA oxidoreductase
1198	 65.60	0	1353573..1354040	+	155	78062051	-	Bcep18194_B1201	-	hypothetical protein
1199	 65.10	0	1354669..1355754	+	361	78062052	-	Bcep18194_B1202	-	outer membrane protein (porin)
1200	 67.52	0	1355788..1356603	+	271	78062053	-	Bcep18194_B1203	-	short chain dehydrogenase
1201	 69.07	0	1356856..1358853	+	665	78062054	-	Bcep18194_B1204	-	hydantoinase/oxoprolinase
1202	 65.16	0	1358853..1359317	+	154	78062055	-	Bcep18194_B1205	-	acetone carboxylase gamma subunit-like
1203	 66.30	0	1359289..1361466	+	725	78062056	-	Bcep18194_B1206	-	5-oxoprolinase (ATP-hydrolyzing)
1204	 64.71	0	1361481..1363727	+	748	78062057	-	Bcep18194_B1207	-	hydantoinase B/oxoprolinase
1205	 70.06	0	1363850..1364704	+	284	78062058	-	Bcep18194_B1208	-	hypothetical protein
1206	 67.77	0	1364698..1366695	+	665	78062059	-	Bcep18194_B1209	-	acetoacetyl-CoA synthetase
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.