IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1037	 61.30	-1	1165804..1166418	+	204	78061890	-	Bcep18194_B1040	-	hypothetical protein
1038	 60.58	-1	1167492..1168082	+	196	78061891	-	Bcep18194_B1041	-	hypothetical protein
1039	 61.56	-1	1168060..1170057	+	665	78061892	-	Bcep18194_B1042	-	Phage terminase GpA
1040	 60.64	-1	1170069..1170317	+	82	78061893	-	Bcep18194_B1043	-	hypothetical protein
1041	 63.50	0	1170317..1171420	+	367	78061894	-	Bcep18194_B1044	-	lytic transglycosylase, catalytic
1042	 59.84	-1	1171432..1171812	+	126	78061895	-	Bcep18194_B1045	-	hypothetical protein
1043	 49.21	-2	1171809..1172438	-	209	78061896	-	Bcep18194_B1046	-	hypothetical protein
1044	 68.78	0	1174320..1174886	+	188	78061897	-	Bcep18194_B1047	-	GCN5-related N-acetyltransferase
1045	 64.53	0	1174908..1175375	-	155	78061898	-	Bcep18194_B1048	-	glyoxalase/bleomycin resistance protein/dioxygenase
1046	 70.20	0	1175573..1176337	-	254	78061899	-	Bcep18194_B1049	-	hypothetical protein
1047	 66.67	0	1176389..1176997	-	202	78061900	-	Bcep18194_B1050	-	autoinducer synthesis protein
1048	 68.69	0	1177212..1177655	-	147	78061901	-	Bcep18194_B1051	-	hypothetical protein
1049	 64.31	0	1177729..1178448	+	239	78061902	-	Bcep18194_B1052	-	LuxR family transcriptional regulator
1050	 65.54	0	1178495..1179202	-	235	78061903	-	Bcep18194_B1053	-	MgtC/SapB transporter
1051	 71.00	+1	1179508..1181052	-	514	78061904	-	Bcep18194_B1054	-	outer membrane efflux protein
1052	 70.37	0	1181039..1183360	-	773	78061905	-	Bcep18194_B1055	-	membrane protein-like
1053	 70.10	0	1183341..1184390	-	349	78061906	-	Bcep18194_B1056	-	multidrug resistance protein MdtN
1054	 71.77	+1	1184387..1184680	-	97	78061907	-	Bcep18194_B1057	-	hypothetical protein
1055	 65.80	0	1184777..1185238	-	153	78061908	-	Bcep18194_B1058	-	hypothetical protein
1056	 68.93	0	1185530..1186678	+	382	78061909	-	Bcep18194_B1059	-	metallophosphoesterase
1057	 67.35	0	1186752..1187339	-	195	78061910	-	Bcep18194_B1060	-	hypothetical protein
1058	 68.53	0	1187661..1188305	+	214	78061911	-	Bcep18194_B1061	-	DNA-N1-methyladenine dioxygenase
1059	 65.32	0	1188555..1188851	+	98	78061912	-	Bcep18194_B1062	-	hypothetical protein
1060	 69.39	0	1189150..1189590	+	146	78061913	-	Bcep18194_B1063	-	general secretion pathway protein I
1061	 67.55	0	1189574..1190254	+	226	78061914	-	Bcep18194_B1064	-	Type II secretory pathway component PulJ
1062	 69.32	0	1190433..1192655	+	740	78061915	-	Bcep18194_B1065	-	TPR repeat-containing protein
1063	 66.62	0	1192698..1194941	+	747	78061916	-	Bcep18194_B1066	-	TPR repeat-containing protein
1064	 66.09	0	1194938..1197181	+	747	78061917	-	Bcep18194_B1067	-	TPR repeat-containing protein
1065	 64.93	0	1197246..1210097	+	4283	78061918	-	Bcep18194_B1068	-	haemagglutinin-like
1066	 60.97	-1	1210262..1211578	-	438	78061919	-	Bcep18194_B1069	-	ABC-type phosphate transport system periplasmic component-like
1067	 64.48	0	1211752..1213077	-	441	78061920	-	Bcep18194_B1070	-	ABC-type phosphate transport system periplasmic component-like
1068	 66.09	0	1213749..1214966	+	405	78061921	-	Bcep18194_B1071	-	general secretion pathway protein F
1069	 71.59	+1	1214975..1215421	-	148	78061922	-	Bcep18194_B1072	-	hypothetical protein
1070	 62.39	-1	1215486..1215953	+	155	78061923	-	Bcep18194_B1073	-	general secretion pathway protein G
1071	 68.16	0	1215928..1216461	+	177	78061924	-	Bcep18194_B1074	-	general secretion pathway protein H
1072	 72.96	+1	1216644..1217390	+	248	78061925	-	Bcep18194_B1075	-	hypothetical protein
1073	 66.85	0	1217397..1217945	+	182	78061926	-	Bcep18194_B1076	-	sigma-24 (FecI-like)
1074	 71.39	+1	1217957..1218952	+	331	78061927	-	Bcep18194_B1077	-	putative FecR
1075	 69.10	0	1219175..1219462	+	95	78061928	-	Bcep18194_B1078	-	hypothetical protein
1076	 68.85	0	1219737..1220561	-	274	78061929	-	Bcep18194_B1079	-	hypothetical protein
1077	 70.94	+1	1220744..1222381	+	545	78061930	-	Bcep18194_B1080	-	prevent-host-death protein
1078	 69.58	0	1222631..1223626	-	331	78061931	-	Bcep18194_B1081	-	general secretion pathway protein K
1079	 69.11	0	1223663..1224235	-	190	78061932	-	Bcep18194_B1082	-	hypothetical protein
1080	 69.02	0	1224456..1224752	+	98	78061933	-	Bcep18194_B1083	-	hypothetical protein
1081	 67.09	0	1224870..1226042	+	390	78061934	-	Bcep18194_B1084	-	hypothetical protein
1082	 66.05	0	1226039..1226689	+	216	78061935	-	Bcep18194_B1085	-	adenylylsulfate kinase
1083	 64.91	0	1226841..1228493	+	550	78061936	-	Bcep18194_B1086	-	surface antigen (D15)
1084	 67.22	0	1228561..1230357	+	598	78061937	-	Bcep18194_B1087	-	MotA/TolQ/ExbB proton channel
1085	 63.02	-1	1230376..1230786	+	136	78061938	-	Bcep18194_B1088	-	biopolymer transport protein ExbD/TolR
1086	 69.53	0	1230791..1231489	+	232	78061939	-	Bcep18194_B1089	-	TonB-like protein
1087	 65.98	0	1231492..1233393	+	633	78061940	-	Bcep18194_B1090	-	hypothetical protein
1088	 67.68	0	1233406..1234095	+	229	78061941	-	Bcep18194_B1091	-	hypothetical protein
1089	 70.07	0	1234153..1234740	+	195	78061942	-	Bcep18194_B1092	-	hypothetical protein
1090	 77.29	+2	1234737..1235150	+	137	78061943	-	Bcep18194_B1093	-	hypothetical protein
1091	 68.46	0	1235195..1236085	+	296	78061944	-	Bcep18194_B1094	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1092	 72.44	+1	1236094..1236924	+	276	78061945	-	Bcep18194_B1095	-	hypothetical protein
1093	 69.14	0	1236944..1237348	+	134	78061946	-	Bcep18194_B1096	-	hypothetical protein
1094	 70.62	+1	1237425..1238864	+	479	78061947	-	Bcep18194_B1097	-	peptidase S1C, Do
1095	 74.12	+1	1238950..1239432	+	160	78061948	-	Bcep18194_B1098	-	hypothetical protein
1096	 66.67	0	1239533..1240012	+	159	78061949	-	Bcep18194_B1099	-	hypothetical protein
1097	 64.75	0	1240048..1240308	-	86	78061950	-	Bcep18194_B1100	-	hypothetical protein
1098	 67.79	0	1240309..1241202	+	297	78061951	-	Bcep18194_B1101	-	IclR family transcriptional regulator
1099	 64.63	0	1241307..1242386	-	359	78061952	-	Bcep18194_B1102	-	outer membrane protein (porin)
1100	 63.21	-1	1242831..1243148	+	105	78061953	-	Bcep18194_B1103	-	Rieske (2Fe-2S) protein
1101	 65.38	0	1243150..1243461	+	103	78061954	-	Bcep18194_B1104	-	hypothetical protein
1102	 66.02	0	1243514..1244590	+	358	78061955	-	Bcep18194_B1105	-	Rieske (2Fe-2S) protein
1103	 70.95	+1	1244583..1245353	+	256	78061956	-	Bcep18194_B1106	-	short chain dehydrogenase
1104	 64.20	0	1245391..1245918	+	175	78061957	-	Bcep18194_B1107	-	hypothetical protein
1105	 71.91	+1	1245937..1246833	+	298	78061958	-	Bcep18194_B1108	-	Alpha/beta hydrolase
1106	 65.15	0	1246830..1247687	+	285	78061959	-	Bcep18194_B1109	-	IclR family transcriptional regulator
1107	 66.42	0	1247684..1248481	+	265	78061960	-	Bcep18194_B1110	-	short chain dehydrogenase
1108	 67.69	0	1248474..1250141	+	555	78061961	-	Bcep18194_B1111	-	hypothetical protein
1109	 71.57	+1	1250134..1250949	+	271	78061962	-	Bcep18194_B1112	-	L-aspartate dehydrogenase
1110	 67.87	0	1251022..1252512	+	496	78061963	-	Bcep18194_B1113	-	betaine-aldehyde dehydrogenase
1111	 65.94	0	1252531..1253493	+	320	78061964	-	Bcep18194_B1114	-	glyoxalase/bleomycin resistance protein/dioxygenase
1112	 68.19	0	1253490..1254734	+	414	78061965	-	Bcep18194_B1115	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1113	 67.24	0	1254764..1256164	+	466	78061966	-	Bcep18194_B1116	-	major facilitator transporter
1114	 67.21	0	1256344..1256895	+	183	78061967	-	Bcep18194_B1117	-	GCN5-related N-acetyltransferase
1115	 65.91	0	1256911..1257309	-	132	78061968	-	Bcep18194_B1118	-	endoribonuclease L-PSP
1116	 68.93	0	1257406..1258332	-	308	78061969	-	Bcep18194_B1119	-	ADP-ribosylation/crystallin J1
1117	 63.16	-1	1258509..1258736	+	75	78061970	-	Bcep18194_B1120	-	hypothetical protein
1118	 68.59	0	1258931..1260598	+	555	78061971	-	Bcep18194_B1121	-	hydroxylamine reductase
1119	 70.48	0	1260612..1261634	+	340	78061972	-	Bcep18194_B1122	-	oxidoreductase
1120	 70.77	+1	1261728..1262141	+	137	78061973	-	Bcep18194_B1123	-	hypothetical protein
1121	 63.74	0	1262218..1262730	+	170	78061974	-	Bcep18194_B1124	-	hypothetical protein
1122	 65.24	0	1262852..1265437	-	861	78061975	-	Bcep18194_B1125	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1123	 67.72	0	1265800..1266555	+	251	78061976	-	Bcep18194_B1126	-	hypothetical protein
1124	 65.82	0	1266577..1267050	-	157	78061977	-	Bcep18194_B1127	-	hypothetical protein
1125	 65.01	0	1267275..1268663	+	462	78061978	-	Bcep18194_B1128	-	hypothetical protein
1126	 66.00	0	1268732..1269031	-	99	78061979	-	Bcep18194_B1129	-	hypothetical protein
1127	 65.75	0	1269605..1270039	-	144	78061980	-	Bcep18194_B1130	-	hypothetical protein
1128	 71.52	+1	1270407..1271891	+	494	78061981	-	Bcep18194_B1131	-	amidase
1129	 70.20	0	1272407..1273171	+	254	78061982	-	Bcep18194_B1132	-	hypothetical protein
1130	 67.51	0	1273293..1274123	+	276	78061983	-	Bcep18194_B1133	-	N-hydroxyarylamine O-acetyltransferase
1131	 64.97	0	1274215..1274391	+	58	78061984	-	Bcep18194_B1134	-	helix-turn-helix protein, CopG
1132	 66.10	0	1274393..1274743	+	116	78061985	-	Bcep18194_B1135	-	hypothetical protein
1133	 70.86	+1	1274751..1275608	+	285	78061986	-	Bcep18194_B1136	-	protein of unknown function Mtu_121
1134	 67.76	0	1275640..1280481	-	1613	78061987	-	Bcep18194_B1137	-	glutamate dehydrogenase (NAD)
1135	 62.43	-1	1280674..1280862	-	62	78061988	-	Bcep18194_B1138	-	4-oxalocrotonate tautomerase
1136	 69.11	0	1280914..1281690	-	258	78061989	-	Bcep18194_B1139	-	hypothetical protein
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.