IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.93   STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
988	 60.15	-1	1108818..1110122	+	434	78061841	-	Bcep18194_B0991	-	hypothetical protein
989	 63.84	0	1110148..1114257	+	1369	78061842	-	Bcep18194_B0992	-	hypothetical protein
990	 63.79	0	1114275..1115489	+	404	78061843	-	Bcep18194_B0993	-	OmpA/MotB family outer membrane protein
991	 55.10	-2	1115779..1116720	+	313	78061844	-	Bcep18194_B0994	-	hypothetical protein
992	 63.48	0	1116699..1117577	-	292	78061845	-	Bcep18194_B0995	-	RpiR family transcriptional regulator
993	 66.15	0	1117941..1119692	+	583	78061846	-	Bcep18194_B0996	-	gamma-glutamyltransferase 1
994	 63.69	0	1119870..1121246	+	458	78061847	-	Bcep18194_B0997	-	Sodium/dicarboxylate symporter
995	 69.17	0	1121276..1121674	-	132	78061848	-	Bcep18194_B0998	-	hypothetical protein
996	 68.29	0	1121719..1123011	-	430	78061849	-	Bcep18194_B0999	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
997	 67.97	0	1123200..1123814	+	204	78061850	-	Bcep18194_B1000	-	TetR family transcriptional regulator
998	 71.93	+1	1123839..1124750	-	303	78061851	-	Bcep18194_B1001	-	LysR family transcriptional regulator
999	 73.10	+1	1124859..1125620	+	253	78061852	-	Bcep18194_B1002	-	Short-chain dehydrogenase/reductase SDR
1000	 65.83	0	1125676..1126155	-	159	78061853	-	Bcep18194_B1003	-	MerR family transcriptional regulator
1001	 69.16	0	1126236..1127480	+	414	78061854	-	Bcep18194_B1004	-	HlyD family secretion protein
1002	 66.98	0	1127494..1130667	+	1057	78061855	-	Bcep18194_B1005	-	hydrophobe/amphiphile efflux pump protein
1003	 72.18	+1	1130664..1132187	+	507	78061856	-	Bcep18194_B1006	-	RND efflux system outer membrane lipoprotein
1004	 67.33	0	1132247..1134940	-	897	78061857	-	Bcep18194_B1007	-	2-oxoacid dehydrogenase subunit E1
1005	 71.05	+1	1135114..1135569	+	151	78061858	-	Bcep18194_B1008	-	MarR family transcriptional regulator
1006	 72.56	+1	1135588..1136706	-	372	78061859	-	Bcep18194_B1009	-	pyruvate dehydrogenase (lipoamide)
1007	 69.14	0	1136812..1137459	+	215	78061860	-	Bcep18194_B1010	-	glutathione S-transferase-like protein
1008	 66.40	0	1137662..1139176	+	504	78061861	-	Bcep18194_B1011	-	cytosine/purines, uracil, thiamine, allantoin transporter
1009	 66.27	0	1139375..1140130	-	251	78061862	-	Bcep18194_B1012	-	Short-chain dehydrogenase/reductase SDR
1010	 69.27	0	1140171..1140707	-	178	78061863	-	Bcep18194_B1013	-	glyoxalase/bleomycin resistance protein/dioxygenase
1011	 66.76	0	1140916..1141959	-	347	78061864	-	Bcep18194_B1014	-	LysR family transcriptional regulator
1012	 68.26	0	1142130..1143446	+	438	78061865	-	Bcep18194_B1015	-	major facilitator transporter
1013	 67.87	0	1143603..1144853	+	416	78061866	-	Bcep18194_B1016	-	major facilitator transporter
1014	 69.28	0	1145026..1145637	+	203	78061867	-	Bcep18194_B1017	-	isochorismatase hydrolase
1015	 68.57	0	1145657..1147282	-	541	78061868	-	Bcep18194_B1018	-	amidohydrolase-like
1016	 68.63	0	1147696..1148511	-	271	78061869	-	Bcep18194_B1019	-	LuxR family transcriptional regulator
1017	 67.30	0	1148734..1149210	-	158	78061870	-	Bcep18194_B1020	-	hypothetical protein
1018	 65.37	0	1149547..1149933	+	128	78061871	-	Bcep18194_B1021	-	putative transcriptional regulator
1019	 73.60	+1	1150434..1150808	-	124	78061872	-	Bcep18194_B1022	-	hypothetical protein
1020	 59.94	-1	1151417..1152502	+	361	78061873	-	Bcep18194_B1023	-	outer membrane protein (porin)
1021	 61.90	-1	1152679..1153077	-	132	78061874	-	Bcep18194_B1024	-	GreA/GreB family elongation factor
1022	 63.03	-1	1153590..1153919	+	109	78061875	-	Bcep18194_B1025	-	hypothetical protein
1023	 63.64	0	1154074..1154535	-	153	78061876	-	Bcep18194_B1026	-	signal-transduction protein
1024	 64.67	0	1154713..1155363	+	216	78061877	-	Bcep18194_B1027	-	GTP cyclohydrolase II
1025	 60.94	-1	1155585..1156859	+	424	78061878	-	Bcep18194_B1028	-	Phage integrase
1026	 55.24	-2	1157140..1157349	+	69	78061879	-	Bcep18194_B1029	-	hypothetical protein
1027	 61.46	-1	1158080..1158463	-	127	78061880	-	Bcep18194_B1030	-	hypothetical protein
1028	 57.60	-2	1158463..1158870	-	135	78061881	-	Bcep18194_B1031	-	hypothetical protein
1029	 59.95	-1	1158867..1159253	-	128	78061882	-	Bcep18194_B1032	-	hypothetical protein
1030	 62.17	-1	1159250..1159672	-	140	78061883	-	Bcep18194_B1033	-	hypothetical protein
1031	 46.91	-2	1159869..1160516	+	215	78061884	-	Bcep18194_B1034	-	hypothetical protein
1032	 63.52	0	1160855..1161172	-	105	78061885	-	Bcep18194_B1035	-	hypothetical protein
1033	 64.64	0	1162309..1162851	+	180	78061886	-	Bcep18194_B1036	-	hypothetical protein
1034	 64.60	0	1163212..1163502	+	96	78061887	-	Bcep18194_B1037	-	hypothetical protein
1035	 60.40	-1	1163529..1163927	+	132	78061888	-	Bcep18194_B1038	-	hypothetical protein
1036	 53.46	-2	1165015..1165635	+	206	78061889	-	Bcep18194_B1039	-	hypothetical protein
1037	 61.30	-1	1165804..1166418	+	204	78061890	-	Bcep18194_B1040	-	hypothetical protein
1038	 60.58	-1	1167492..1168082	+	196	78061891	-	Bcep18194_B1041	-	hypothetical protein
1039	 61.56	-1	1168060..1170057	+	665	78061892	-	Bcep18194_B1042	-	Phage terminase GpA
1040	 60.64	-1	1170069..1170317	+	82	78061893	-	Bcep18194_B1043	-	hypothetical protein
1041	 63.50	0	1170317..1171420	+	367	78061894	-	Bcep18194_B1044	-	lytic transglycosylase, catalytic
1042	 59.84	-1	1171432..1171812	+	126	78061895	-	Bcep18194_B1045	-	hypothetical protein
1043	 49.21	-2	1171809..1172438	-	209	78061896	-	Bcep18194_B1046	-	hypothetical protein
1044	 68.78	0	1174320..1174886	+	188	78061897	-	Bcep18194_B1047	-	GCN5-related N-acetyltransferase
1045	 64.53	0	1174908..1175375	-	155	78061898	-	Bcep18194_B1048	-	glyoxalase/bleomycin resistance protein/dioxygenase
1046	 70.20	0	1175573..1176337	-	254	78061899	-	Bcep18194_B1049	-	hypothetical protein
1047	 66.67	0	1176389..1176997	-	202	78061900	-	Bcep18194_B1050	-	autoinducer synthesis protein
1048	 68.69	0	1177212..1177655	-	147	78061901	-	Bcep18194_B1051	-	hypothetical protein
1049	 64.31	0	1177729..1178448	+	239	78061902	-	Bcep18194_B1052	-	LuxR family transcriptional regulator
1050	 65.54	0	1178495..1179202	-	235	78061903	-	Bcep18194_B1053	-	MgtC/SapB transporter
1051	 71.00	+1	1179508..1181052	-	514	78061904	-	Bcep18194_B1054	-	outer membrane efflux protein
1052	 70.37	0	1181039..1183360	-	773	78061905	-	Bcep18194_B1055	-	membrane protein-like
1053	 70.10	0	1183341..1184390	-	349	78061906	-	Bcep18194_B1056	-	multidrug resistance protein MdtN
1054	 71.77	+1	1184387..1184680	-	97	78061907	-	Bcep18194_B1057	-	hypothetical protein
1055	 65.80	0	1184777..1185238	-	153	78061908	-	Bcep18194_B1058	-	hypothetical protein
1056	 68.93	0	1185530..1186678	+	382	78061909	-	Bcep18194_B1059	-	metallophosphoesterase
1057	 67.35	0	1186752..1187339	-	195	78061910	-	Bcep18194_B1060	-	hypothetical protein
1058	 68.53	0	1187661..1188305	+	214	78061911	-	Bcep18194_B1061	-	DNA-N1-methyladenine dioxygenase
1059	 65.32	0	1188555..1188851	+	98	78061912	-	Bcep18194_B1062	-	hypothetical protein
1060	 69.39	0	1189150..1189590	+	146	78061913	-	Bcep18194_B1063	-	general secretion pathway protein I
1061	 67.55	0	1189574..1190254	+	226	78061914	-	Bcep18194_B1064	-	Type II secretory pathway component PulJ
1062	 69.32	0	1190433..1192655	+	740	78061915	-	Bcep18194_B1065	-	TPR repeat-containing protein
1063	 66.62	0	1192698..1194941	+	747	78061916	-	Bcep18194_B1066	-	TPR repeat-containing protein
1064	 66.09	0	1194938..1197181	+	747	78061917	-	Bcep18194_B1067	-	TPR repeat-containing protein
1065	 64.93	0	1197246..1210097	+	4283	78061918	-	Bcep18194_B1068	-	haemagglutinin-like
1066	 60.97	-1	1210262..1211578	-	438	78061919	-	Bcep18194_B1069	-	ABC-type phosphate transport system periplasmic component-like
1067	 64.48	0	1211752..1213077	-	441	78061920	-	Bcep18194_B1070	-	ABC-type phosphate transport system periplasmic component-like
1068	 66.09	0	1213749..1214966	+	405	78061921	-	Bcep18194_B1071	-	general secretion pathway protein F
1069	 71.59	+1	1214975..1215421	-	148	78061922	-	Bcep18194_B1072	-	hypothetical protein
1070	 62.39	-1	1215486..1215953	+	155	78061923	-	Bcep18194_B1073	-	general secretion pathway protein G
1071	 68.16	0	1215928..1216461	+	177	78061924	-	Bcep18194_B1074	-	general secretion pathway protein H
1072	 72.96	+1	1216644..1217390	+	248	78061925	-	Bcep18194_B1075	-	hypothetical protein
1073	 66.85	0	1217397..1217945	+	182	78061926	-	Bcep18194_B1076	-	sigma-24 (FecI-like)
1074	 71.39	+1	1217957..1218952	+	331	78061927	-	Bcep18194_B1077	-	putative FecR
1075	 69.10	0	1219175..1219462	+	95	78061928	-	Bcep18194_B1078	-	hypothetical protein
1076	 68.85	0	1219737..1220561	-	274	78061929	-	Bcep18194_B1079	-	hypothetical protein
1077	 70.94	+1	1220744..1222381	+	545	78061930	-	Bcep18194_B1080	-	prevent-host-death protein
1078	 69.58	0	1222631..1223626	-	331	78061931	-	Bcep18194_B1081	-	general secretion pathway protein K
1079	 69.11	0	1223663..1224235	-	190	78061932	-	Bcep18194_B1082	-	hypothetical protein
1080	 69.02	0	1224456..1224752	+	98	78061933	-	Bcep18194_B1083	-	hypothetical protein
1081	 67.09	0	1224870..1226042	+	390	78061934	-	Bcep18194_B1084	-	hypothetical protein
1082	 66.05	0	1226039..1226689	+	216	78061935	-	Bcep18194_B1085	-	adenylylsulfate kinase
1083	 64.91	0	1226841..1228493	+	550	78061936	-	Bcep18194_B1086	-	surface antigen (D15)
1084	 67.22	0	1228561..1230357	+	598	78061937	-	Bcep18194_B1087	-	MotA/TolQ/ExbB proton channel
1085	 63.02	-1	1230376..1230786	+	136	78061938	-	Bcep18194_B1088	-	biopolymer transport protein ExbD/TolR
1086	 69.53	0	1230791..1231489	+	232	78061939	-	Bcep18194_B1089	-	TonB-like protein
1087	 65.98	0	1231492..1233393	+	633	78061940	-	Bcep18194_B1090	-	hypothetical protein
66.93	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.