IslandPathversion 1.0

IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.93 STD DEV: 3.60
Burkholderia sp. 383 chromosome 2, complete sequence - 1..3587082
3174 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
962	 67.83	0	1077810..1079012	+	400	78061815	-	Bcep18194_B0965	-	D-isomer specific 2-hydroxyacid dehydrogenase
963	 68.60	0	1079053..1080192	-	379	78061816	-	Bcep18194_B0966	-	patatin
964	 68.61	0	1080404..1080865	-	153	78061817	-	Bcep18194_B0967	-	hypothetical protein
965	 59.76	-1	1080960..1081292	-	110	78061818	-	Bcep18194_B0968	-	plastocyanin
966	 67.72	0	1081318..1082262	-	314	78061819	-	Bcep18194_B0969	-	metallophosphoesterase
967	 66.67	0	1082518..1084107	+	529	78061820	-	Bcep18194_B0970	-	phosphate transporter
968	 64.27	0	1084189..1085940	+	583	78061821	-	Bcep18194_B0971	-	ABC anion transporter, fused inner membrane subunits
969	 65.92	0	1085952..1087298	+	448	78061822	-	Bcep18194_B0972	-	nitrate/sulfonate/bicarbonate ABC transporter ATPase
970	 61.39	-1	1087349..1088467	-	372	78061823	-	Bcep18194_B0973	-	ImpA-like protein
971	 66.10	0	1088464..1089519	-	351	78061824	-	Bcep18194_B0974	-	hypothetical protein
972	 63.39	0	1089519..1091408	-	629	78061825	-	Bcep18194_B0975	-	hypothetical protein
973	 62.48	-1	1091446..1092018	-	190	78061826	-	Bcep18194_B0976	-	hypothetical protein
974	 66.67	0	1092011..1092865	-	284	78061827	-	Bcep18194_B0977	-	virulence protein, SciE type
975	 65.75	0	1092862..1093512	-	216	78061828	-	Bcep18194_B0978	-	hypothetical protein
976	 64.77	0	1094050..1096731	+	893	78061829	-	Bcep18194_B0979	-	AAA ATPase, Clp
977	 64.07	0	1096768..1097307	+	179	78061830	-	Bcep18194_B0980	-	hypothetical protein
978	 62.92	-1	1097335..1098828	+	497	78061831	-	Bcep18194_B0981	-	hypothetical protein
979	 60.29	-1	1098922..1099407	+	161	78061832	-	Bcep18194_B0982	-	hypothetical protein
980	 63.10	-1	1099487..1099990	+	167	78061833	-	Bcep18194_B0983	-	hypothetical protein
981	 62.95	-1	1100022..1101368	+	448	78061834	-	Bcep18194_B0984	-	hypothetical protein
982	 60.15	-1	1101550..1104081	+	843	78061835	-	Bcep18194_B0985	-	Rhs element Vgr protein
983	 56.49	-2	1104053..1104976	+	307	78061836	-	Bcep18194_B0986	-	hypothetical protein
984	 53.07	-2	1104973..1105494	+	173	78061837	-	Bcep18194_B0987	-	hypothetical protein
985	 54.36	-2	1105593..1106120	+	175	78061838	-	Bcep18194_B0988	-	hypothetical protein
986	 55.89	-2	1106133..1108508	+	791	78061839	-	Bcep18194_B0989	-	hypothetical protein
987	 60.99	-1	1108534..1108815	+	93	78061840	-	Bcep18194_B0990	-	hypothetical protein
988	 60.15	-1	1108818..1110122	+	434	78061841	-	Bcep18194_B0991	-	hypothetical protein
989	 63.84	0	1110148..1114257	+	1369	78061842	-	Bcep18194_B0992	-	hypothetical protein
990	 63.79	0	1114275..1115489	+	404	78061843	-	Bcep18194_B0993	-	OmpA/MotB family outer membrane protein
991	 55.10	-2	1115779..1116720	+	313	78061844	-	Bcep18194_B0994	-	hypothetical protein
992	 63.48	0	1116699..1117577	-	292	78061845	-	Bcep18194_B0995	-	RpiR family transcriptional regulator
993	 66.15	0	1117941..1119692	+	583	78061846	-	Bcep18194_B0996	-	gamma-glutamyltransferase 1
994	 63.69	0	1119870..1121246	+	458	78061847	-	Bcep18194_B0997	-	Sodium/dicarboxylate symporter
995	 69.17	0	1121276..1121674	-	132	78061848	-	Bcep18194_B0998	-	hypothetical protein
996	 68.29	0	1121719..1123011	-	430	78061849	-	Bcep18194_B0999	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
997	 67.97	0	1123200..1123814	+	204	78061850	-	Bcep18194_B1000	-	TetR family transcriptional regulator
998	 71.93	+1	1123839..1124750	-	303	78061851	-	Bcep18194_B1001	-	LysR family transcriptional regulator
999	 73.10	+1	1124859..1125620	+	253	78061852	-	Bcep18194_B1002	-	Short-chain dehydrogenase/reductase SDR
1000	 65.83	0	1125676..1126155	-	159	78061853	-	Bcep18194_B1003	-	MerR family transcriptional regulator
1001	 69.16	0	1126236..1127480	+	414	78061854	-	Bcep18194_B1004	-	HlyD family secretion protein
1002	 66.98	0	1127494..1130667	+	1057	78061855	-	Bcep18194_B1005	-	hydrophobe/amphiphile efflux pump protein
1003	 72.18	+1	1130664..1132187	+	507	78061856	-	Bcep18194_B1006	-	RND efflux system outer membrane lipoprotein
1004	 67.33	0	1132247..1134940	-	897	78061857	-	Bcep18194_B1007	-	2-oxoacid dehydrogenase subunit E1
1005	 71.05	+1	1135114..1135569	+	151	78061858	-	Bcep18194_B1008	-	MarR family transcriptional regulator
1006	 72.56	+1	1135588..1136706	-	372	78061859	-	Bcep18194_B1009	-	pyruvate dehydrogenase (lipoamide)
1007	 69.14	0	1136812..1137459	+	215	78061860	-	Bcep18194_B1010	-	glutathione S-transferase-like protein
1008	 66.40	0	1137662..1139176	+	504	78061861	-	Bcep18194_B1011	-	cytosine/purines, uracil, thiamine, allantoin transporter
1009	 66.27	0	1139375..1140130	-	251	78061862	-	Bcep18194_B1012	-	Short-chain dehydrogenase/reductase SDR
1010	 69.27	0	1140171..1140707	-	178	78061863	-	Bcep18194_B1013	-	glyoxalase/bleomycin resistance protein/dioxygenase
1011	 66.76	0	1140916..1141959	-	347	78061864	-	Bcep18194_B1014	-	LysR family transcriptional regulator
1012	 68.26	0	1142130..1143446	+	438	78061865	-	Bcep18194_B1015	-	major facilitator transporter
1013	 67.87	0	1143603..1144853	+	416	78061866	-	Bcep18194_B1016	-	major facilitator transporter
1014	 69.28	0	1145026..1145637	+	203	78061867	-	Bcep18194_B1017	-	isochorismatase hydrolase
1015	 68.57	0	1145657..1147282	-	541	78061868	-	Bcep18194_B1018	-	amidohydrolase-like
1016	 68.63	0	1147696..1148511	-	271	78061869	-	Bcep18194_B1019	-	LuxR family transcriptional regulator
1017	 67.30	0	1148734..1149210	-	158	78061870	-	Bcep18194_B1020	-	hypothetical protein
1018	 65.37	0	1149547..1149933	+	128	78061871	-	Bcep18194_B1021	-	putative transcriptional regulator
1019	 73.60	+1	1150434..1150808	-	124	78061872	-	Bcep18194_B1022	-	hypothetical protein
1020	 59.94	-1	1151417..1152502	+	361	78061873	-	Bcep18194_B1023	-	outer membrane protein (porin)
1021	 61.90	-1	1152679..1153077	-	132	78061874	-	Bcep18194_B1024	-	GreA/GreB family elongation factor
1022	 63.03	-1	1153590..1153919	+	109	78061875	-	Bcep18194_B1025	-	hypothetical protein
1023	 63.64	0	1154074..1154535	-	153	78061876	-	Bcep18194_B1026	-	signal-transduction protein
1024	 64.67	0	1154713..1155363	+	216	78061877	-	Bcep18194_B1027	-	GTP cyclohydrolase II
1025	 60.94	-1	1155585..1156859	+	424	78061878	-	Bcep18194_B1028	-	Phage integrase
1026	 55.24	-2	1157140..1157349	+	69	78061879	-	Bcep18194_B1029	-	hypothetical protein
1027	 61.46	-1	1158080..1158463	-	127	78061880	-	Bcep18194_B1030	-	hypothetical protein
1028	 57.60	-2	1158463..1158870	-	135	78061881	-	Bcep18194_B1031	-	hypothetical protein
1029	 59.95	-1	1158867..1159253	-	128	78061882	-	Bcep18194_B1032	-	hypothetical protein
1030	 62.17	-1	1159250..1159672	-	140	78061883	-	Bcep18194_B1033	-	hypothetical protein
1031	 46.91	-2	1159869..1160516	+	215	78061884	-	Bcep18194_B1034	-	hypothetical protein
1032	 63.52	0	1160855..1161172	-	105	78061885	-	Bcep18194_B1035	-	hypothetical protein
1033	 64.64	0	1162309..1162851	+	180	78061886	-	Bcep18194_B1036	-	hypothetical protein
1034	 64.60	0	1163212..1163502	+	96	78061887	-	Bcep18194_B1037	-	hypothetical protein
1035	 60.40	-1	1163529..1163927	+	132	78061888	-	Bcep18194_B1038	-	hypothetical protein
1036	 53.46	-2	1165015..1165635	+	206	78061889	-	Bcep18194_B1039	-	hypothetical protein
1037	 61.30	-1	1165804..1166418	+	204	78061890	-	Bcep18194_B1040	-	hypothetical protein
1038	 60.58	-1	1167492..1168082	+	196	78061891	-	Bcep18194_B1041	-	hypothetical protein
1039	 61.56	-1	1168060..1170057	+	665	78061892	-	Bcep18194_B1042	-	Phage terminase GpA
1040	 60.64	-1	1170069..1170317	+	82	78061893	-	Bcep18194_B1043	-	hypothetical protein
1041	 63.50	0	1170317..1171420	+	367	78061894	-	Bcep18194_B1044	-	lytic transglycosylase, catalytic
1042	 59.84	-1	1171432..1171812	+	126	78061895	-	Bcep18194_B1045	-	hypothetical protein
1043	 49.21	-2	1171809..1172438	-	209	78061896	-	Bcep18194_B1046	-	hypothetical protein
1044	 68.78	0	1174320..1174886	+	188	78061897	-	Bcep18194_B1047	-	GCN5-related N-acetyltransferase
1045	 64.53	0	1174908..1175375	-	155	78061898	-	Bcep18194_B1048	-	glyoxalase/bleomycin resistance protein/dioxygenase
1046	 70.20	0	1175573..1176337	-	254	78061899	-	Bcep18194_B1049	-	hypothetical protein
1047	 66.67	0	1176389..1176997	-	202	78061900	-	Bcep18194_B1050	-	autoinducer synthesis protein
1048	 68.69	0	1177212..1177655	-	147	78061901	-	Bcep18194_B1051	-	hypothetical protein
1049	 64.31	0	1177729..1178448	+	239	78061902	-	Bcep18194_B1052	-	LuxR family transcriptional regulator
1050	 65.54	0	1178495..1179202	-	235	78061903	-	Bcep18194_B1053	-	MgtC/SapB transporter
1051	 71.00	+1	1179508..1181052	-	514	78061904	-	Bcep18194_B1054	-	outer membrane efflux protein
1052	 70.37	0	1181039..1183360	-	773	78061905	-	Bcep18194_B1055	-	membrane protein-like
1053	 70.10	0	1183341..1184390	-	349	78061906	-	Bcep18194_B1056	-	multidrug resistance protein MdtN
1054	 71.77	+1	1184387..1184680	-	97	78061907	-	Bcep18194_B1057	-	hypothetical protein
1055	 65.80	0	1184777..1185238	-	153	78061908	-	Bcep18194_B1058	-	hypothetical protein
1056	 68.93	0	1185530..1186678	+	382	78061909	-	Bcep18194_B1059	-	metallophosphoesterase
1057	 67.35	0	1186752..1187339	-	195	78061910	-	Bcep18194_B1060	-	hypothetical protein
1058	 68.53	0	1187661..1188305	+	214	78061911	-	Bcep18194_B1061	-	DNA-N1-methyladenine dioxygenase
1059	 65.32	0	1188555..1188851	+	98	78061912	-	Bcep18194_B1062	-	hypothetical protein
1060	 69.39	0	1189150..1189590	+	146	78061913	-	Bcep18194_B1063	-	general secretion pathway protein I
1061	 67.55	0	1189574..1190254	+	226	78061914	-	Bcep18194_B1064	-	Type II secretory pathway component PulJ
66.93	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.