IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
734	 62.76	0	730367..731338	+	323	126457459	-	BURPS1106A_A0741	-	dipeptidase family protein
735	 67.23	0	731489..732022	+	177	126458023	-	BURPS1106A_A0742	-	hypothetical protein
736	 67.05	0	732083..734146	+	687	126456967	-	BURPS1106A_A0743	-	oxidoreductase, FAD/FMN-binding
737	 70.66	0	734149..736074	+	641	126456494	-	BURPS1106A_A0744	-	ptuative iron-sulfur cluster-binding protein
738	 72.21	0	736079..737251	+	390	126456027	-	BURPS1106A_A0745	-	electron transfer flavoprotein, FAD-binding subunit
739	 72.77	0	737248..738033	+	261	126457971	-	BURPS1106A_A0746	-	putative electron transfer flavoprotein subunit
740	 63.83	0	738058..739326	+	422	126457442	-	BURPS1106A_A0747	-	Rieske family iron-sulfur cluster-binding protein
741	 67.63	0	739350..740492	+	380	126457219	-	BURPS1106A_A0748	-	putative ferredoxin, 2Fe-2S
742	 64.93	0	740602..741465	+	287	126457885	-	BURPS1106A_A0749	-	quaternary amine ABC transporter periplasmic substrate-binding protein
743	 65.40	0	741646..743301	+	551	126456162	-	BURPS1106A_A0750	-	amino acid permease
744	 66.32	0	743388..744263	-	291	126456894	purU	BURPS1106A_A0751	-	formyltetrahydrofolate deformylase
745	 73.15	0	744407..745285	-	292	126456587	-	BURPS1106A_A0752	-	LysR family transcriptional regulator
746	 68.47	0	745448..747001	+	517	126457339	-	BURPS1106A_A0753	-	sulfatase family protein
747	 68.40	0	746998..748035	+	345	126457569	-	BURPS1106A_A0754	-	quaternary amine ABC transporter periplasmic substrate-binding protein
748	 58.54	-1	748032..748154	+	40	126458292	-	BURPS1106A_A0755	-	outer membrane porin OpcP
749	 63.11	0	748254..749405	+	383	126456892	-	BURPS1106A_A0756	-	outer membrane porin
750	 66.91	0	749460..750686	-	408	126456186	-	BURPS1106A_A0757	-	peptidase family protein
751	 67.55	0	750804..752507	-	567	126457443	-	BURPS1106A_A0758	-	metallopeptidase domain-containing protein
752	 66.88	0	752979..753923	-	314	126456319	-	BURPS1106A_A0759	-	AraC family transcriptional regulator
753	 64.00	0	754131..755141	+	336	126455704	-	BURPS1106A_A0760	-	quaternary amine ABC transporter periplasmic substrate-binding protein
754	 70.32	0	755224..756153	+	309	126458184	-	BURPS1106A_A0761	-	hypothetical protein
755	 68.39	0	756187..757233	+	348	126457225	-	BURPS1106A_A0762	-	3-hydroxybutyryl-CoA dehydrogenase
756	 69.68	0	757236..757733	+	165	126457750	-	BURPS1106A_A0763	-	hypothetical protein
757	 73.85	0	757769..758728	+	319	126456746	-	BURPS1106A_A0764	-	alpha/beta hydrolase domain-containing protein
758	 69.26	0	759075..759383	-	102	126458297	-	BURPS1106A_A0765	-	hypothetical protein
759	 69.49	0	759616..760605	-	329	126457585	-	BURPS1106A_A0766	-	dehydrogenase
760	 66.67	0	760596..760784	+	62	126456500	-	BURPS1106A_A0767	-	hypothetical protein
761	 70.41	0	760824..761090	-	88	126455813	-	BURPS1106A_A0768	-	hypothetical protein
762	 64.71	0	761391..761645	+	84	126457356	-	BURPS1106A_A0769	-	hypothetical protein
763	 73.29	0	761884..763407	-	507	126456286	-	BURPS1106A_A0770	-	FAD-dependent oxidoreductase
764	 64.43	0	764090..765205	+	371	126458055	-	BURPS1106A_A0772	-	high-affinity branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein
765	 77.19	+1	765202..765372	-	56	126455585	-	BURPS1106A_A0771	-	hypothetical protein
766	 65.70	0	765399..766325	+	308	126456016	-	BURPS1106A_A0773	-	high-affinity branched-chain amino acid ABC transporter, permease protein
767	 67.60	0	766322..767605	+	427	126456719	livM	BURPS1106A_A0774	-	leucine/isoleucine/valine transporter permease subunit
768	 67.44	0	767602..768375	+	257	126457413	livG	BURPS1106A_A0775	-	leucine/isoleucine/valine transporter ATP-binding subunit
769	 67.38	0	768375..769076	+	233	126458320	-	BURPS1106A_A0776	-	high-affinity branched-chain amino acid ABC transporter, ATP-binding protein
770	 61.76	-1	769195..769500	-	101	126458006	-	BURPS1106A_A0777	-	hypothetical protein
771	 43.75	-2	769499..769642	+	47	126457809	-	BURPS1106A_A0778	-	hypothetical protein
772	 70.12	0	769772..771046	+	424	126456678	-	BURPS1106A_A0779	-	LasA protease precursor
773	 77.36	+1	771057..771215	+	52	126455989	-	BURPS1106A_A0780	-	hypothetical protein
774	 74.57	+1	771359..772813	-	484	126458175	pchA	BURPS1106A_A0781	-	salicylate biosynthesis isochorismate synthase
775	 70.26	0	772810..773115	-	101	126456480	pchB	BURPS1106A_A0782	-	isochorismate-pyruvate lyase
776	 72.22	0	773112..773885	-	257	126457783	pchC	BURPS1106A_A0783	-	pyochelin biosynthetic protein PchC
777	 72.26	0	773882..775525	-	547	126457899	dhbE	BURPS1106A_A0784	-	2,3-dihydroxybenzoate-AMP ligase
778	 73.33	0	775736..775870	+	44	126458375	-	BURPS1106A_A0785	-	hypothetical protein
779	 69.79	0	776063..777118	+	351	126457541	pchR	BURPS1106A_A0786	-	regulatory protein PchR
780	 74.34	+1	777245..781714	+	1489	126456962	-	BURPS1106A_A0787	-	non-ribosomal peptide synthase
781	 72.56	0	781711..787782	+	2023	126456052	-	BURPS1106A_A0788	-	putative siderophore non-ribosomal peptide synthase
782	 75.38	+1	787779..788834	+	351	126457927	pchG	BURPS1106A_A0789	-	pyochelin biosynthetic protein
783	 75.52	+1	788831..790558	+	575	126457042	-	BURPS1106A_A0790	-	putative ABC transporter, permease protein
784	 75.29	+1	790555..792339	+	594	126456527	-	BURPS1106A_A0791	-	putative ABC transporter, ATP-binding protein
785	 71.85	0	792398..792532	-	44	126457295	-	BURPS1106A_A0792	-	hypothetical protein
786	 69.77	0	792515..794674	+	719	126456597	fptA	BURPS1106A_A0793	-	TonB-dependepnt Fe(III)-pyochelin receptor
787	 78.65	+1	794674..794940	+	88	126455753	-	BURPS1106A_A0794	-	hypothetical protein
788	 76.04	+1	794942..796456	+	504	126458004	-	BURPS1106A_A0795	-	hypothetical protein
789	 71.78	0	796473..797744	+	423	126456990	-	BURPS1106A_A0796	-	RhtX/FptX family siderophore transporter
790	 71.98	0	797916..798122	-	68	126456074	-	BURPS1106A_A0797	-	hypothetical protein
791	 67.01	0	798119..798409	-	96	126458414	-	BURPS1106A_A0798	-	iron-sulfur cluster-binding protein
792	 64.13	0	798408..798722	+	104	126456624	-	BURPS1106A_A0799	-	hypothetical protein
793	 71.61	0	798784..800724	-	646	126457531	-	BURPS1106A_A0800	-	sigma-54 dependent trancsriptional regulator
794	 64.62	0	800994..801188	+	64	126458464	-	BURPS1106A_A0801	-	hypothetical protein
795	 63.49	0	801501..801689	+	62	126455901	-	BURPS1106A_A0802	-	hypothetical protein
796	 65.62	0	801871..802158	+	95	126458393	-	BURPS1106A_A0803	-	hypothetical protein
797	 69.96	0	802139..802381	+	80	126457826	-	BURPS1106A_A0804	-	hypothetical protein
798	 64.56	0	802378..802662	+	94	126456396	-	BURPS1106A_A0805	-	hypothetical protein
799	 66.44	0	803081..804382	-	433	126455519	-	BURPS1106A_A0806	-	AzgA family purine transporter
800	 67.30	0	804625..805251	+	208	126458216	-	BURPS1106A_A0807	-	hypothetical protein
801	 60.29	-1	805576..805779	+	67	126457352	-	BURPS1106A_A0808	-	hypothetical protein
802	 64.21	0	806087..806371	+	94	126457468	-	BURPS1106A_A0809	-	hypothetical protein
803	 69.28	0	806457..807182	-	241	126456911	-	BURPS1106A_A0810	-	hypothetical protein
804	 69.77	0	807179..807565	-	128	126456183	-	BURPS1106A_A0811	-	hypothetical protein
805	 72.68	0	807789..808337	-	182	126456649	-	BURPS1106A_A0812	-	hypothetical protein
806	 68.04	0	808319..809044	-	241	126457143	-	BURPS1106A_A0813	-	hypothetical protein
807	 68.78	0	809161..810060	+	299	126457342	-	BURPS1106A_A0814	-	LysR family transcriptional regulator
808	 67.82	0	810090..811562	-	490	126458248	-	BURPS1106A_A0815	-	aldehyde dehydrogenase (NAD) family protein
809	 66.55	0	811601..812452	-	283	126456154	-	BURPS1106A_A0816	-	TauD/TfdA family dioxygenase
810	 69.11	0	812415..813641	-	408	126456814	ppd	BURPS1106A_A0817	-	phosphonopyruvate decarboxylase
811	 61.07	-1	813644..814555	-	303	126456980	-	BURPS1106A_A0818	-	putative hydrolase
812	 65.90	0	815023..815931	-	302	126457607	-	BURPS1106A_A0819	-	hypothetical protein
813	 72.25	0	815969..817759	-	596	126455578	-	BURPS1106A_A0820	-	short chain dehydrogenase
814	 67.57	0	817813..818700	-	295	126456290	-	BURPS1106A_A0821	-	hypothetical protein
815	 76.62	+1	819077..819277	+	66	126457170	-	BURPS1106A_A0823	-	hypothetical protein
816	 65.25	0	819234..820007	-	257	126458473	-	BURPS1106A_A0822	-	SPFH domain-containing protein
817	 76.10	+1	820004..821509	-	501	126456811	-	BURPS1106A_A0824	-	NfeD family protein
818	 70.04	0	821593..822720	-	375	126455915	-	BURPS1106A_A0825	-	AraC family transcriptional regulator
819	 68.34	0	822820..823953	+	377	126457593	-	BURPS1106A_A0826	-	acyl-CoA dehydrogenase
820	 69.25	0	824308..826011	+	567	126458267	-	BURPS1106A_A0827	-	AMP-binding enzyme
821	 67.65	0	826080..827609	+	509	126455515	mmsA	BURPS1106A_A0828	-	methylmalonate-semialdehyde dehydrogenase
822	 70.68	0	827721..828617	+	298	126457021	mmsB	BURPS1106A_A0829	-	3-hydroxyisobutyrate dehydrogenase
823	 73.08	0	828617..829411	+	264	126457284	-	BURPS1106A_A0830	-	enoyl-CoA hydratase
824	 70.93	0	829408..830556	+	382	126458020	-	BURPS1106A_A0831	-	enoyl-CoA hydratase/isomerase family protein
825	 78.33	+1	830594..830713	+	39	126457839	-	BURPS1106A_A0832	-	hypothetical protein
826	 72.04	0	830664..830942	+	92	126457888	-	BURPS1106A_A0833	-	hypothetical protein
827	 72.45	0	831009..832391	-	460	126458566	-	BURPS1106A_A0834	-	NodT family efflux transporter outer membrane lipoprotein
828	 68.60	0	832401..834362	-	653	126458054	-	BURPS1106A_A0835	-	macrolide-specific ABC-type efflux carrier
829	 66.97	0	834365..835672	-	435	126457362	-	BURPS1106A_A0836	-	macrolide efflux protein MacA
830	 68.08	0	835669..835881	-	70	126457100	-	BURPS1106A_A0837	-	hypothetical protein
831	 66.76	0	835896..836990	+	364	126456412	-	BURPS1106A_A0838	-	luciferase family monooxygenase
832	 68.93	0	836999..837352	+	117	126455788	-	BURPS1106A_A0839	-	hypothetical protein
833	 64.45	0	837363..838085	+	240	126456671	-	BURPS1106A_A0841	-	ribonuclease T2 family protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.