IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
694	 62.95	0	684685..686190	+	501	126458605	-	BURPS1106A_A0701	-	hypothetical protein
695	 62.31	0	686334..686861	+	175	126456659	-	BURPS1106A_A0702	-	hypothetical protein
696	 62.27	0	686941..687372	+	143	126456040	-	BURPS1106A_A0703	-	hypothetical protein
697	 71.44	0	687386..689248	+	620	126455797	-	BURPS1106A_A0704	-	hypothetical protein
698	 70.51	0	689245..690234	+	329	126458306	-	BURPS1106A_A0705	-	hypothetical protein
699	 71.79	0	690237..693107	+	956	126457113	-	BURPS1106A_A0706	-	putative ATP-dependent Clp protease, ATP-binding subunit ClpB
700	 64.18	0	693098..695389	+	763	126456440	-	BURPS1106A_A0707	-	Rhs element Vgr protein
701	 71.21	0	695412..695543	-	43	126457609	-	BURPS1106A_A0708	-	hypothetical protein
702	 64.83	0	695555..697843	+	762	126456731	-	BURPS1106A_A0709	-	Rhs element Vgr protein
703	 68.79	0	697847..700063	+	738	126456216	-	BURPS1106A_A0710	-	hypothetical protein
704	 68.91	0	700063..701133	+	356	126458544	-	BURPS1106A_A0711	-	hypothetical protein
705	 72.25	0	701136..701852	+	238	126457880	-	BURPS1106A_A0712	-	hypothetical protein
706	 66.41	0	701895..702284	+	129	126457245	-	BURPS1106A_A0713	-	hypothetical protein
707	 71.72	0	702290..702883	+	197	126456475	-	BURPS1106A_A0714	-	putative lipoprotein
708	 69.75	0	702880..704241	+	453	126455771	-	BURPS1106A_A0715	-	hypothetical protein
709	 71.97	0	704324..705982	+	552	126457957	-	BURPS1106A_A0716	-	hypothetical protein
710	 70.75	0	705979..709482	+	1167	126457252	-	BURPS1106A_A0717	-	hypothetical protein
711	 60.56	-1	709541..709900	+	119	126456546	-	BURPS1106A_A0718	-	hypothetical protein
712	 72.07	0	709923..710348	+	141	126455763	-	BURPS1106A_A0719	-	hypothetical protein
713	 47.97	-2	710548..710670	-	40	126458342	-	BURPS1106A_A0720	-	hypothetical protein
714	 60.44	-1	710624..710944	+	106	126457620	-	BURPS1106A_A0721	-	hypothetical protein
715	 41.13	-2	710981..711121	+	46	126457697	-	BURPS1106A_A0722	-	hypothetical protein
716	 67.44	0	711495..712394	+	299	126456665	rhlA	BURPS1106A_A0723	-	rhamnosyltransferase I, subunit A
717	 73.60	0	712436..712738	-	100	126458335	-	BURPS1106A_A0724	-	hypothetical protein
718	 75.38	+1	712628..713947	+	439	126457580	rhlB	BURPS1106A_A0725	-	rhamnosyltransferase I, subunit B
719	 70.27	0	713944..715527	+	527	126457285	-	BURPS1106A_A0726	-	EmrB/QacA family drug resistance transporter
720	 79.49	+1	715479..715595	+	38	126456435	-	BURPS1106A_A0727	-	hypothetical protein
721	 72.89	0	715780..716775	+	331	126457630	-	BURPS1106A_A0728	-	rhamnosyltransferase
722	 68.85	0	716901..717083	+	60	126456611	-	BURPS1106A_A0729	-	hypothetical protein
723	 74.94	+1	717080..718663	+	527	126455696	-	BURPS1106A_A0730	-	NodT family efflux transporter outer membrane lipoprotein
724	 73.54	0	718979..719167	-	62	126458102	-	BURPS1106A_A0731	-	hypothetical protein
725	 73.27	0	719186..720655	+	489	126457840	-	BURPS1106A_A0732	-	multidrug resistance secretion protein
726	 66.67	0	720881..721183	+	100	126455955	-	BURPS1106A_A0734	-	hypothetical protein
727	 67.75	0	721178..722842	-	554	126458519	sacC	BURPS1106A_A0733	-	levanase
728	 67.54	0	722975..724459	-	494	126456826	sacB	BURPS1106A_A0735	-	levansucrase
729	 57.89	-1	724448..724561	+	37	126457168	-	BURPS1106A_A0736	-	hypothetical protein
730	 70.30	0	724729..725745	+	338	126457955	-	BURPS1106A_A0737	-	transcriptional regulator RafR, putative
731	 67.17	0	726185..727384	+	399	126455852	fdhA	BURPS1106A_A0738	-	glutathione-independent formaldehyde dehydrogenase
732	 67.12	0	727562..728659	-	365	126456465	-	BURPS1106A_A0739	-	AraC family transcriptional regulator
733	 67.69	0	729020..730294	+	424	126456789	glyA	BURPS1106A_A0740	-	serine hydroxymethyltransferase
734	 62.76	0	730367..731338	+	323	126457459	-	BURPS1106A_A0741	-	dipeptidase family protein
735	 67.23	0	731489..732022	+	177	126458023	-	BURPS1106A_A0742	-	hypothetical protein
736	 67.05	0	732083..734146	+	687	126456967	-	BURPS1106A_A0743	-	oxidoreductase, FAD/FMN-binding
737	 70.66	0	734149..736074	+	641	126456494	-	BURPS1106A_A0744	-	ptuative iron-sulfur cluster-binding protein
738	 72.21	0	736079..737251	+	390	126456027	-	BURPS1106A_A0745	-	electron transfer flavoprotein, FAD-binding subunit
739	 72.77	0	737248..738033	+	261	126457971	-	BURPS1106A_A0746	-	putative electron transfer flavoprotein subunit
740	 63.83	0	738058..739326	+	422	126457442	-	BURPS1106A_A0747	-	Rieske family iron-sulfur cluster-binding protein
741	 67.63	0	739350..740492	+	380	126457219	-	BURPS1106A_A0748	-	putative ferredoxin, 2Fe-2S
742	 64.93	0	740602..741465	+	287	126457885	-	BURPS1106A_A0749	-	quaternary amine ABC transporter periplasmic substrate-binding protein
743	 65.40	0	741646..743301	+	551	126456162	-	BURPS1106A_A0750	-	amino acid permease
744	 66.32	0	743388..744263	-	291	126456894	purU	BURPS1106A_A0751	-	formyltetrahydrofolate deformylase
745	 73.15	0	744407..745285	-	292	126456587	-	BURPS1106A_A0752	-	LysR family transcriptional regulator
746	 68.47	0	745448..747001	+	517	126457339	-	BURPS1106A_A0753	-	sulfatase family protein
747	 68.40	0	746998..748035	+	345	126457569	-	BURPS1106A_A0754	-	quaternary amine ABC transporter periplasmic substrate-binding protein
748	 58.54	-1	748032..748154	+	40	126458292	-	BURPS1106A_A0755	-	outer membrane porin OpcP
749	 63.11	0	748254..749405	+	383	126456892	-	BURPS1106A_A0756	-	outer membrane porin
750	 66.91	0	749460..750686	-	408	126456186	-	BURPS1106A_A0757	-	peptidase family protein
751	 67.55	0	750804..752507	-	567	126457443	-	BURPS1106A_A0758	-	metallopeptidase domain-containing protein
752	 66.88	0	752979..753923	-	314	126456319	-	BURPS1106A_A0759	-	AraC family transcriptional regulator
753	 64.00	0	754131..755141	+	336	126455704	-	BURPS1106A_A0760	-	quaternary amine ABC transporter periplasmic substrate-binding protein
754	 70.32	0	755224..756153	+	309	126458184	-	BURPS1106A_A0761	-	hypothetical protein
755	 68.39	0	756187..757233	+	348	126457225	-	BURPS1106A_A0762	-	3-hydroxybutyryl-CoA dehydrogenase
756	 69.68	0	757236..757733	+	165	126457750	-	BURPS1106A_A0763	-	hypothetical protein
757	 73.85	0	757769..758728	+	319	126456746	-	BURPS1106A_A0764	-	alpha/beta hydrolase domain-containing protein
758	 69.26	0	759075..759383	-	102	126458297	-	BURPS1106A_A0765	-	hypothetical protein
759	 69.49	0	759616..760605	-	329	126457585	-	BURPS1106A_A0766	-	dehydrogenase
760	 66.67	0	760596..760784	+	62	126456500	-	BURPS1106A_A0767	-	hypothetical protein
761	 70.41	0	760824..761090	-	88	126455813	-	BURPS1106A_A0768	-	hypothetical protein
762	 64.71	0	761391..761645	+	84	126457356	-	BURPS1106A_A0769	-	hypothetical protein
763	 73.29	0	761884..763407	-	507	126456286	-	BURPS1106A_A0770	-	FAD-dependent oxidoreductase
764	 64.43	0	764090..765205	+	371	126458055	-	BURPS1106A_A0772	-	high-affinity branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein
765	 77.19	+1	765202..765372	-	56	126455585	-	BURPS1106A_A0771	-	hypothetical protein
766	 65.70	0	765399..766325	+	308	126456016	-	BURPS1106A_A0773	-	high-affinity branched-chain amino acid ABC transporter, permease protein
767	 67.60	0	766322..767605	+	427	126456719	livM	BURPS1106A_A0774	-	leucine/isoleucine/valine transporter permease subunit
768	 67.44	0	767602..768375	+	257	126457413	livG	BURPS1106A_A0775	-	leucine/isoleucine/valine transporter ATP-binding subunit
769	 67.38	0	768375..769076	+	233	126458320	-	BURPS1106A_A0776	-	high-affinity branched-chain amino acid ABC transporter, ATP-binding protein
770	 61.76	-1	769195..769500	-	101	126458006	-	BURPS1106A_A0777	-	hypothetical protein
771	 43.75	-2	769499..769642	+	47	126457809	-	BURPS1106A_A0778	-	hypothetical protein
772	 70.12	0	769772..771046	+	424	126456678	-	BURPS1106A_A0779	-	LasA protease precursor
773	 77.36	+1	771057..771215	+	52	126455989	-	BURPS1106A_A0780	-	hypothetical protein
774	 74.57	+1	771359..772813	-	484	126458175	pchA	BURPS1106A_A0781	-	salicylate biosynthesis isochorismate synthase
775	 70.26	0	772810..773115	-	101	126456480	pchB	BURPS1106A_A0782	-	isochorismate-pyruvate lyase
776	 72.22	0	773112..773885	-	257	126457783	pchC	BURPS1106A_A0783	-	pyochelin biosynthetic protein PchC
777	 72.26	0	773882..775525	-	547	126457899	dhbE	BURPS1106A_A0784	-	2,3-dihydroxybenzoate-AMP ligase
778	 73.33	0	775736..775870	+	44	126458375	-	BURPS1106A_A0785	-	hypothetical protein
779	 69.79	0	776063..777118	+	351	126457541	pchR	BURPS1106A_A0786	-	regulatory protein PchR
780	 74.34	+1	777245..781714	+	1489	126456962	-	BURPS1106A_A0787	-	non-ribosomal peptide synthase
781	 72.56	0	781711..787782	+	2023	126456052	-	BURPS1106A_A0788	-	putative siderophore non-ribosomal peptide synthase
782	 75.38	+1	787779..788834	+	351	126457927	pchG	BURPS1106A_A0789	-	pyochelin biosynthetic protein
783	 75.52	+1	788831..790558	+	575	126457042	-	BURPS1106A_A0790	-	putative ABC transporter, permease protein
784	 75.29	+1	790555..792339	+	594	126456527	-	BURPS1106A_A0791	-	putative ABC transporter, ATP-binding protein
785	 71.85	0	792398..792532	-	44	126457295	-	BURPS1106A_A0792	-	hypothetical protein
786	 69.77	0	792515..794674	+	719	126456597	fptA	BURPS1106A_A0793	-	TonB-dependepnt Fe(III)-pyochelin receptor
787	 78.65	+1	794674..794940	+	88	126455753	-	BURPS1106A_A0794	-	hypothetical protein
788	 76.04	+1	794942..796456	+	504	126458004	-	BURPS1106A_A0795	-	hypothetical protein
789	 71.78	0	796473..797744	+	423	126456990	-	BURPS1106A_A0796	-	RhtX/FptX family siderophore transporter
790	 71.98	0	797916..798122	-	68	126456074	-	BURPS1106A_A0797	-	hypothetical protein
791	 67.01	0	798119..798409	-	96	126458414	-	BURPS1106A_A0798	-	iron-sulfur cluster-binding protein
792	 64.13	0	798408..798722	+	104	126456624	-	BURPS1106A_A0799	-	hypothetical protein
793	 71.61	0	798784..800724	-	646	126457531	-	BURPS1106A_A0800	-	sigma-54 dependent trancsriptional regulator
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.