IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
649	 69.77	0	637670..638668	+	332	126457853	-	BURPS1106A_A0656	-	3-oxoacyl-(acyl carrier protein) synthase III
650	 70.98	0	638647..639573	+	308	126456744	-	BURPS1106A_A0657	-	metallo-beta-lactamase family protein
651	 70.56	0	639701..643552	+	1283	126456025	-	BURPS1106A_A0658	-	acyl-CoA dehydrogenase
652	 70.51	0	643566..645701	+	711	126457361	-	BURPS1106A_A0660	-	hypothetical protein
653	 77.78	+1	645680..645913	-	77	126455785	-	BURPS1106A_A0659	-	hypothetical protein
654	 65.58	0	645981..646439	+	152	126456534	-	BURPS1106A_A0661	-	hypothetical protein
655	 61.22	-1	646519..646665	+	48	126456954	-	BURPS1106A_A0662	-	hypothetical protein
656	 63.82	0	647272..647727	+	151	126456051	-	BURPS1106A_A0663	-	hypothetical protein
657	 61.40	-1	647729..647842	-	37	126455521	-	BURPS1106A_A0664	-	transposase
658	 62.03	0	648232..648468	+	78	126458622	-	BURPS1106A_A0665	-	transposase B
659	 68.53	0	648683..650290	-	535	126457340	-	BURPS1106A_A0666	-	alkyl hydroperoxide reductase, subunit F
660	 63.12	0	650494..651057	-	187	126456420	ahpC	BURPS1106A_A0667	-	alkyl hydroperoxide reductase, subunit C
661	 57.26	-1	651137..651253	-	38	126458149	-	BURPS1106A_A0668	-	hypothetical protein
662	 65.53	0	651317..652543	-	408	126457077	-	BURPS1106A_A0669	-	chitin-binding protein
663	 71.67	0	652974..653573	-	199	126456575	-	BURPS1106A_A0670	-	hypothetical protein
664	 75.16	+1	653552..654175	-	207	126455847	-	BURPS1106A_A0671	-	nitroreductase family protein
665	 66.03	0	654248..654403	-	51	126455794	-	BURPS1106A_A0672	-	hypothetical protein
666	 70.89	0	654402..654614	+	70	126457486	-	BURPS1106A_A0673	-	hypothetical protein
667	 65.69	0	654892..656325	+	477	126457201	-	BURPS1106A_A0674	-	hypothetical protein
668	 63.38	0	656420..657361	+	313	126456452	-	BURPS1106A_A0675	-	hypothetical protein
669	 72.31	0	657370..658326	+	318	126456643	-	BURPS1106A_A0677	-	hypothetical protein
670	 76.97	+1	658295..658459	-	54	126457151	-	BURPS1106A_A0676	-	hypothetical protein
671	 69.21	0	658463..661885	+	1140	126456145	-	BURPS1106A_A0678	-	transglutaminase domain-containing protein
672	 78.89	+1	661882..662061	+	59	126458032	-	BURPS1106A_A0679	-	hypothetical protein
673	 71.75	0	662025..664721	+	898	126457549	-	BURPS1106A_A0680	-	hypothetical protein
674	 73.41	0	664712..665764	+	350	126456820	-	BURPS1106A_A0681	-	transglutaminase domain-containing protein
675	 70.79	0	665952..667454	-	500	126458332	-	BURPS1106A_A0682	-	GntR family transcriptional regulator
676	 68.15	0	667558..668769	+	403	126457655	-	BURPS1106A_A0683	-	Bcr/CflA subfamily drug resistance transporter
677	 76.42	+1	668766..669134	+	122	126455844	-	BURPS1106A_A0685	-	leucine-rich repeat-containing protein
678	 68.25	0	669091..670164	-	357	126456591	-	BURPS1106A_A0684	-	hypothetical protein
679	 73.86	0	670230..670382	-	50	126457961	-	BURPS1106A_A0686	-	hypothetical protein
680	 71.12	0	670403..671368	-	321	126458459	-	BURPS1106A_A0687	-	DJ-1/PfpI family protein/transcriptional regulator, AraC family
681	 69.64	0	671468..672208	+	246	126458166	-	BURPS1106A_A0688	-	putative isonitrile hydratase
682	 71.63	0	672354..673421	-	355	126456684	phnW	BURPS1106A_A0689	-	2-aminoethylphosphonate-pyruvate transaminase
683	 73.35	0	673436..674617	-	393	126457573	ppd	BURPS1106A_A0690	-	3-phosphonopyruvate decarboxylase
684	 68.21	0	674614..676302	-	562	126457777	-	BURPS1106A_A0691	-	phosphoenolpyruvate phosphomutase
685	 69.27	0	676299..677066	-	255	126456776	-	BURPS1106A_A0692	-	hypothetical protein
686	 74.55	+1	677105..678106	-	333	126457710	-	BURPS1106A_A0693	-	hypothetical protein
687	 67.44	0	678103..678873	-	256	126457917	-	BURPS1106A_A0694	-	2OG-Fe(II) oxygenase family oxidoreductase
688	 70.72	0	678873..679562	-	229	126455666	-	BURPS1106A_A0695	-	CDP-alcohol phosphatidyltransferase family protein
689	 66.93	0	679927..681441	+	504	126457343	-	BURPS1106A_A0696	-	acetyl-CoA hydrolase/transferase family protein
690	 75.97	+1	681538..681666	+	42	126456039	-	BURPS1106A_A0697	-	hypothetical protein
691	 46.83	-2	682476..682601	+	41	126456713	-	BURPS1106A_A0698	-	hypothetical protein
692	 64.64	0	683162..684100	+	312	126457639	-	BURPS1106A_A0699	-	ImpA-related N-terminal family protein
693	 63.02	0	684134..684682	+	182	126457683	-	BURPS1106A_A0700	-	hypothetical protein
694	 62.95	0	684685..686190	+	501	126458605	-	BURPS1106A_A0701	-	hypothetical protein
695	 62.31	0	686334..686861	+	175	126456659	-	BURPS1106A_A0702	-	hypothetical protein
696	 62.27	0	686941..687372	+	143	126456040	-	BURPS1106A_A0703	-	hypothetical protein
697	 71.44	0	687386..689248	+	620	126455797	-	BURPS1106A_A0704	-	hypothetical protein
698	 70.51	0	689245..690234	+	329	126458306	-	BURPS1106A_A0705	-	hypothetical protein
699	 71.79	0	690237..693107	+	956	126457113	-	BURPS1106A_A0706	-	putative ATP-dependent Clp protease, ATP-binding subunit ClpB
700	 64.18	0	693098..695389	+	763	126456440	-	BURPS1106A_A0707	-	Rhs element Vgr protein
701	 71.21	0	695412..695543	-	43	126457609	-	BURPS1106A_A0708	-	hypothetical protein
702	 64.83	0	695555..697843	+	762	126456731	-	BURPS1106A_A0709	-	Rhs element Vgr protein
703	 68.79	0	697847..700063	+	738	126456216	-	BURPS1106A_A0710	-	hypothetical protein
704	 68.91	0	700063..701133	+	356	126458544	-	BURPS1106A_A0711	-	hypothetical protein
705	 72.25	0	701136..701852	+	238	126457880	-	BURPS1106A_A0712	-	hypothetical protein
706	 66.41	0	701895..702284	+	129	126457245	-	BURPS1106A_A0713	-	hypothetical protein
707	 71.72	0	702290..702883	+	197	126456475	-	BURPS1106A_A0714	-	putative lipoprotein
708	 69.75	0	702880..704241	+	453	126455771	-	BURPS1106A_A0715	-	hypothetical protein
709	 71.97	0	704324..705982	+	552	126457957	-	BURPS1106A_A0716	-	hypothetical protein
710	 70.75	0	705979..709482	+	1167	126457252	-	BURPS1106A_A0717	-	hypothetical protein
711	 60.56	-1	709541..709900	+	119	126456546	-	BURPS1106A_A0718	-	hypothetical protein
712	 72.07	0	709923..710348	+	141	126455763	-	BURPS1106A_A0719	-	hypothetical protein
713	 47.97	-2	710548..710670	-	40	126458342	-	BURPS1106A_A0720	-	hypothetical protein
714	 60.44	-1	710624..710944	+	106	126457620	-	BURPS1106A_A0721	-	hypothetical protein
715	 41.13	-2	710981..711121	+	46	126457697	-	BURPS1106A_A0722	-	hypothetical protein
716	 67.44	0	711495..712394	+	299	126456665	rhlA	BURPS1106A_A0723	-	rhamnosyltransferase I, subunit A
717	 73.60	0	712436..712738	-	100	126458335	-	BURPS1106A_A0724	-	hypothetical protein
718	 75.38	+1	712628..713947	+	439	126457580	rhlB	BURPS1106A_A0725	-	rhamnosyltransferase I, subunit B
719	 70.27	0	713944..715527	+	527	126457285	-	BURPS1106A_A0726	-	EmrB/QacA family drug resistance transporter
720	 79.49	+1	715479..715595	+	38	126456435	-	BURPS1106A_A0727	-	hypothetical protein
721	 72.89	0	715780..716775	+	331	126457630	-	BURPS1106A_A0728	-	rhamnosyltransferase
722	 68.85	0	716901..717083	+	60	126456611	-	BURPS1106A_A0729	-	hypothetical protein
723	 74.94	+1	717080..718663	+	527	126455696	-	BURPS1106A_A0730	-	NodT family efflux transporter outer membrane lipoprotein
724	 73.54	0	718979..719167	-	62	126458102	-	BURPS1106A_A0731	-	hypothetical protein
725	 73.27	0	719186..720655	+	489	126457840	-	BURPS1106A_A0732	-	multidrug resistance secretion protein
726	 66.67	0	720881..721183	+	100	126455955	-	BURPS1106A_A0734	-	hypothetical protein
727	 67.75	0	721178..722842	-	554	126458519	sacC	BURPS1106A_A0733	-	levanase
728	 67.54	0	722975..724459	-	494	126456826	sacB	BURPS1106A_A0735	-	levansucrase
729	 57.89	-1	724448..724561	+	37	126457168	-	BURPS1106A_A0736	-	hypothetical protein
730	 70.30	0	724729..725745	+	338	126457955	-	BURPS1106A_A0737	-	transcriptional regulator RafR, putative
731	 67.17	0	726185..727384	+	399	126455852	fdhA	BURPS1106A_A0738	-	glutathione-independent formaldehyde dehydrogenase
732	 67.12	0	727562..728659	-	365	126456465	-	BURPS1106A_A0739	-	AraC family transcriptional regulator
733	 67.69	0	729020..730294	+	424	126456789	glyA	BURPS1106A_A0740	-	serine hydroxymethyltransferase
734	 62.76	0	730367..731338	+	323	126457459	-	BURPS1106A_A0741	-	dipeptidase family protein
735	 67.23	0	731489..732022	+	177	126458023	-	BURPS1106A_A0742	-	hypothetical protein
736	 67.05	0	732083..734146	+	687	126456967	-	BURPS1106A_A0743	-	oxidoreductase, FAD/FMN-binding
737	 70.66	0	734149..736074	+	641	126456494	-	BURPS1106A_A0744	-	ptuative iron-sulfur cluster-binding protein
738	 72.21	0	736079..737251	+	390	126456027	-	BURPS1106A_A0745	-	electron transfer flavoprotein, FAD-binding subunit
739	 72.77	0	737248..738033	+	261	126457971	-	BURPS1106A_A0746	-	putative electron transfer flavoprotein subunit
740	 63.83	0	738058..739326	+	422	126457442	-	BURPS1106A_A0747	-	Rieske family iron-sulfur cluster-binding protein
741	 67.63	0	739350..740492	+	380	126457219	-	BURPS1106A_A0748	-	putative ferredoxin, 2Fe-2S
742	 64.93	0	740602..741465	+	287	126457885	-	BURPS1106A_A0749	-	quaternary amine ABC transporter periplasmic substrate-binding protein
743	 65.40	0	741646..743301	+	551	126456162	-	BURPS1106A_A0750	-	amino acid permease
744	 66.32	0	743388..744263	-	291	126456894	purU	BURPS1106A_A0751	-	formyltetrahydrofolate deformylase
745	 73.15	0	744407..745285	-	292	126456587	-	BURPS1106A_A0752	-	LysR family transcriptional regulator
746	 68.47	0	745448..747001	+	517	126457339	-	BURPS1106A_A0753	-	sulfatase family protein
747	 68.40	0	746998..748035	+	345	126457569	-	BURPS1106A_A0754	-	quaternary amine ABC transporter periplasmic substrate-binding protein
748	 58.54	-1	748032..748154	+	40	126458292	-	BURPS1106A_A0755	-	outer membrane porin OpcP
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.