IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
600	 53.44	-2	594388..594765	-	125	126458524	-	BURPS1106A_A0607	-	hypothetical protein
601	 72.79	0	595086..596522	-	478	126457845	-	BURPS1106A_A0608	-	GntR family transcriptional regulator
602	 69.58	0	596509..597126	+	205	126456704	-	BURPS1106A_A0609	-	DJ-1/PfpI family protein
603	 78.74	+1	597322..597495	+	57	126456363	-	BURPS1106A_A0611	-	glycosyltransferase
604	 66.10	0	597482..598534	-	350	126456044	-	BURPS1106A_A0610	-	D-alanyl-D-alanine carboxypeptidase family protein
605	 35.96	-2	598602..598715	+	37	126455876	-	BURPS1106A_A0612	-	hypothetical protein
606	 72.96	0	598751..599020	-	89	126456531	-	BURPS1106A_A0613	-	hypothetical protein
607	 68.85	0	599023..599205	-	60	126457216	-	BURPS1106A_A0614	-	hypothetical protein
608	 68.78	0	599241..599429	+	62	126456708	-	BURPS1106A_A0615	-	hypothetical protein
609	 72.87	0	599445..599573	+	42	126455818	-	BURPS1106A_A0617	-	hypothetical protein
610	 71.43	0	599568..599693	-	41	126457787	-	BURPS1106A_A0616	-	hypothetical protein
611	 70.99	0	599682..601904	+	740	126456341	-	BURPS1106A_A0618	-	helix-hairpin-helix DNA-binding motif-containing protein
612	 69.25	0	601919..602422	-	167	126457235	-	BURPS1106A_A0619	-	metallophosphoesterase
613	 77.44	+1	602421..602717	+	98	126458534	-	BURPS1106A_A0620	-	hypothetical protein
614	 71.71	0	602714..604378	+	554	126456244	-	BURPS1106A_A0621	-	outer membrane efflux protein
615	 66.97	0	604375..605676	+	433	126455550	-	BURPS1106A_A0622	-	multicopper oxidase family protein
616	 64.71	0	605795..606151	+	118	126457310	-	BURPS1106A_A0623	-	hypothetical protein
617	 70.26	0	606192..606581	+	129	126458048	-	BURPS1106A_A0624	-	putative copper resistance protein CopC
618	 72.57	0	606578..607525	+	315	126455567	-	BURPS1106A_A0625	-	putative copper resistance protein D
619	 57.89	-1	607716..607829	+	37	126456445	-	BURPS1106A_A0626	-	hypothetical protein
620	 69.75	0	607826..609676	+	616	126457772	-	BURPS1106A_A0627	-	methyl-accepting chemotaxis protein
621	 69.45	0	609984..611276	-	430	126458511	-	BURPS1106A_A0628	-	oxidoreductase
622	 74.13	+1	611347..612753	-	468	126456038	-	BURPS1106A_A0629	-	oxidoreductase
623	 66.10	0	612782..614356	-	524	126456733	-	BURPS1106A_A0630	-	hypothetical protein
624	 66.99	0	614425..615354	-	309	126456024	potI	BURPS1106A_A0631	-	putrescine ABC transporter, permease protein PotI
625	 65.85	0	615351..616331	-	326	126456194	potH	BURPS1106A_A0632	-	putrescine ABC transporter, permease protein PotH
626	 65.02	0	616328..617482	-	384	126457099	potG	BURPS1106A_A0633	-	putrescine ABC transporter, ATP-binding protein
627	 64.46	0	617672..618892	-	406	126457538	potF	BURPS1106A_A0634	-	putrescine ABC transporter, periplasmic putrescine-binding protein
628	 67.58	0	618861..620279	-	472	126458516	-	BURPS1106A_A0635	-	putative aminotransferase
629	 64.12	0	620315..621649	-	444	126455597	glnA	BURPS1106A_A0636	-	glutamine synthetase catalytic domain
630	 71.16	0	621676..622476	-	266	126457802	-	BURPS1106A_A0637	-	glutamine amidotransferase
631	 50.37	-2	622431..622565	-	44	126457423	-	BURPS1106A_A0638	-	hypothetical protein
632	 72.59	0	622574..622708	-	44	126458097	-	BURPS1106A_A0639	-	hypothetical protein
633	 48.84	-2	623232..623360	-	42	126456658	-	BURPS1106A_A0640	-	hypothetical protein
634	 63.77	0	623418..623969	+	183	126457392	-	BURPS1106A_A0641	-	aldehyde dehydrogenase-like protein
635	 69.48	0	624079..625569	+	496	126457646	-	BURPS1106A_A0642	-	aldehyde dehydrogenase (NAD) family protein
636	 68.22	0	625700..626662	+	320	126455781	speB	BURPS1106A_A0643	-	agmatinase
637	 69.08	0	626781..627194	+	137	126456218	-	BURPS1106A_A0644	-	hypothetical protein
638	 65.29	0	627332..627622	+	96	126456944	groES	BURPS1106A_A0645	-	co-chaperonin GroES
639	 69.10	0	627644..629290	+	548	126457920	groEL	BURPS1106A_A0646	-	chaperonin GroEL
640	 65.77	0	629351..629797	-	148	126456201	-	BURPS1106A_A0647	-	hypothetical protein
641	 77.78	+1	629993..630145	-	50	126456482	-	BURPS1106A_A0648	-	hypothetical protein
642	 68.92	0	630404..632938	+	844	126457217	-	BURPS1106A_A0649	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
643	 65.38	0	633191..633502	+	103	126456569	-	BURPS1106A_A0651	-	hypothetical protein
644	 37.14	-2	633490..633699	-	69	126458272	-	BURPS1106A_A0650	-	hypothetical protein
645	 55.77	-1	633780..633935	-	51	126458139	-	BURPS1106A_A0652	-	hypothetical protein
646	 71.03	0	633972..635597	+	541	126457315	-	BURPS1106A_A0653	-	2-aminobenzoate-CoA ligase
647	 72.95	0	635684..636574	+	296	126456792	-	BURPS1106A_A0654	-	hypothetical protein
648	 70.19	0	636574..637680	+	368	126455956	-	BURPS1106A_A0655	-	3-oxoacyl-(acyl-carrier-protein) synthase family protein
649	 69.77	0	637670..638668	+	332	126457853	-	BURPS1106A_A0656	-	3-oxoacyl-(acyl carrier protein) synthase III
650	 70.98	0	638647..639573	+	308	126456744	-	BURPS1106A_A0657	-	metallo-beta-lactamase family protein
651	 70.56	0	639701..643552	+	1283	126456025	-	BURPS1106A_A0658	-	acyl-CoA dehydrogenase
652	 70.51	0	643566..645701	+	711	126457361	-	BURPS1106A_A0660	-	hypothetical protein
653	 77.78	+1	645680..645913	-	77	126455785	-	BURPS1106A_A0659	-	hypothetical protein
654	 65.58	0	645981..646439	+	152	126456534	-	BURPS1106A_A0661	-	hypothetical protein
655	 61.22	-1	646519..646665	+	48	126456954	-	BURPS1106A_A0662	-	hypothetical protein
656	 63.82	0	647272..647727	+	151	126456051	-	BURPS1106A_A0663	-	hypothetical protein
657	 61.40	-1	647729..647842	-	37	126455521	-	BURPS1106A_A0664	-	transposase
658	 62.03	0	648232..648468	+	78	126458622	-	BURPS1106A_A0665	-	transposase B
659	 68.53	0	648683..650290	-	535	126457340	-	BURPS1106A_A0666	-	alkyl hydroperoxide reductase, subunit F
660	 63.12	0	650494..651057	-	187	126456420	ahpC	BURPS1106A_A0667	-	alkyl hydroperoxide reductase, subunit C
661	 57.26	-1	651137..651253	-	38	126458149	-	BURPS1106A_A0668	-	hypothetical protein
662	 65.53	0	651317..652543	-	408	126457077	-	BURPS1106A_A0669	-	chitin-binding protein
663	 71.67	0	652974..653573	-	199	126456575	-	BURPS1106A_A0670	-	hypothetical protein
664	 75.16	+1	653552..654175	-	207	126455847	-	BURPS1106A_A0671	-	nitroreductase family protein
665	 66.03	0	654248..654403	-	51	126455794	-	BURPS1106A_A0672	-	hypothetical protein
666	 70.89	0	654402..654614	+	70	126457486	-	BURPS1106A_A0673	-	hypothetical protein
667	 65.69	0	654892..656325	+	477	126457201	-	BURPS1106A_A0674	-	hypothetical protein
668	 63.38	0	656420..657361	+	313	126456452	-	BURPS1106A_A0675	-	hypothetical protein
669	 72.31	0	657370..658326	+	318	126456643	-	BURPS1106A_A0677	-	hypothetical protein
670	 76.97	+1	658295..658459	-	54	126457151	-	BURPS1106A_A0676	-	hypothetical protein
671	 69.21	0	658463..661885	+	1140	126456145	-	BURPS1106A_A0678	-	transglutaminase domain-containing protein
672	 78.89	+1	661882..662061	+	59	126458032	-	BURPS1106A_A0679	-	hypothetical protein
673	 71.75	0	662025..664721	+	898	126457549	-	BURPS1106A_A0680	-	hypothetical protein
674	 73.41	0	664712..665764	+	350	126456820	-	BURPS1106A_A0681	-	transglutaminase domain-containing protein
675	 70.79	0	665952..667454	-	500	126458332	-	BURPS1106A_A0682	-	GntR family transcriptional regulator
676	 68.15	0	667558..668769	+	403	126457655	-	BURPS1106A_A0683	-	Bcr/CflA subfamily drug resistance transporter
677	 76.42	+1	668766..669134	+	122	126455844	-	BURPS1106A_A0685	-	leucine-rich repeat-containing protein
678	 68.25	0	669091..670164	-	357	126456591	-	BURPS1106A_A0684	-	hypothetical protein
679	 73.86	0	670230..670382	-	50	126457961	-	BURPS1106A_A0686	-	hypothetical protein
680	 71.12	0	670403..671368	-	321	126458459	-	BURPS1106A_A0687	-	DJ-1/PfpI family protein/transcriptional regulator, AraC family
681	 69.64	0	671468..672208	+	246	126458166	-	BURPS1106A_A0688	-	putative isonitrile hydratase
682	 71.63	0	672354..673421	-	355	126456684	phnW	BURPS1106A_A0689	-	2-aminoethylphosphonate-pyruvate transaminase
683	 73.35	0	673436..674617	-	393	126457573	ppd	BURPS1106A_A0690	-	3-phosphonopyruvate decarboxylase
684	 68.21	0	674614..676302	-	562	126457777	-	BURPS1106A_A0691	-	phosphoenolpyruvate phosphomutase
685	 69.27	0	676299..677066	-	255	126456776	-	BURPS1106A_A0692	-	hypothetical protein
686	 74.55	+1	677105..678106	-	333	126457710	-	BURPS1106A_A0693	-	hypothetical protein
687	 67.44	0	678103..678873	-	256	126457917	-	BURPS1106A_A0694	-	2OG-Fe(II) oxygenase family oxidoreductase
688	 70.72	0	678873..679562	-	229	126455666	-	BURPS1106A_A0695	-	CDP-alcohol phosphatidyltransferase family protein
689	 66.93	0	679927..681441	+	504	126457343	-	BURPS1106A_A0696	-	acetyl-CoA hydrolase/transferase family protein
690	 75.97	+1	681538..681666	+	42	126456039	-	BURPS1106A_A0697	-	hypothetical protein
691	 46.83	-2	682476..682601	+	41	126456713	-	BURPS1106A_A0698	-	hypothetical protein
692	 64.64	0	683162..684100	+	312	126457639	-	BURPS1106A_A0699	-	ImpA-related N-terminal family protein
693	 63.02	0	684134..684682	+	182	126457683	-	BURPS1106A_A0700	-	hypothetical protein
694	 62.95	0	684685..686190	+	501	126458605	-	BURPS1106A_A0701	-	hypothetical protein
695	 62.31	0	686334..686861	+	175	126456659	-	BURPS1106A_A0702	-	hypothetical protein
696	 62.27	0	686941..687372	+	143	126456040	-	BURPS1106A_A0703	-	hypothetical protein
697	 71.44	0	687386..689248	+	620	126455797	-	BURPS1106A_A0704	-	hypothetical protein
698	 70.51	0	689245..690234	+	329	126458306	-	BURPS1106A_A0705	-	hypothetical protein
699	 71.79	0	690237..693107	+	956	126457113	-	BURPS1106A_A0706	-	putative ATP-dependent Clp protease, ATP-binding subunit ClpB
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.