IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
533	 61.84	-1	522353..522580	-	75	126458180	-	BURPS1106A_A0540	-	gp57
534	 61.90	0	522982..523149	+	55	126457422	-	BURPS1106A_A0541	-	hypothetical protein
535	 58.56	-1	523248..523469	+	73	126458365	-	BURPS1106A_A0542	-	hypothetical protein
536	 62.11	0	523453..523737	+	94	126457429	-	BURPS1106A_A0543	-	hypothetical protein
537	 60.74	-1	523908..524042	+	44	126456368	-	BURPS1106A_A0544	-	hypothetical protein
538	 63.33	0	524155..524394	+	79	126455499	-	BURPS1106A_A0545	-	gp82
539	 58.13	-1	524288..524767	+	159	126458209	-	BURPS1106A_A0546	-	bacteriophage/transposase fusion protein
540	 58.15	-1	524748..525158	+	136	126457289	-	BURPS1106A_A0547	-	transposase
541	 55.56	-2	525349..525501	-	50	126457586	-	BURPS1106A_A0548	-	hypothetical protein
542	 68.31	0	525767..527227	+	486	126456621	-	BURPS1106A_A0549	-	Ser/Thr protein phosphatase family protein
543	 70.82	0	527278..528648	+	456	126456121	-	BURPS1106A_A0550	-	di-haem cytochrome c peroxidase
544	 39.32	-2	528617..528733	+	38	126458385	-	BURPS1106A_A0551	-	hypothetical protein
545	 52.38	-2	529256..529402	-	48	126456699	-	BURPS1106A_A0552	-	hypothetical protein
546	 62.88	0	529956..530087	+	43	126457718	-	BURPS1106A_A0553	-	hypothetical protein
547	 62.70	0	530315..530869	+	184	126455623	-	BURPS1106A_A0554	-	integrase core subunit
548	 67.76	0	530901..531635	-	244	126456314	-	BURPS1106A_A0555	-	hypothetical protein
549	 65.71	0	531626..543991	-	4121	126457557	-	BURPS1106A_A0556	-	LysM domain-containing protein
550	 64.85	0	544005..547583	-	1192	126455692	-	BURPS1106A_A0557	-	hypothetical protein
551	 59.88	-1	547701..548393	-	230	126456610	-	BURPS1106A_A0558	-	hypothetical protein
552	 61.58	-1	548510..549256	-	248	126457061	-	BURPS1106A_A0559	-	hypothetical protein
553	 59.56	-1	549470..549877	+	135	126457428	-	BURPS1106A_A0560	-	hypothetical protein
554	 66.56	0	549885..551828	+	647	126458081	-	BURPS1106A_A0561	-	acetolactate synthase large subunit
555	 68.91	0	551988..554975	-	995	126457912	-	BURPS1106A_A0562	-	putative lipoprotein
556	 67.13	0	554977..555621	-	214	126455593	-	BURPS1106A_A0563	-	putative lipoprotein
557	 51.61	-2	556270..556548	+	92	126458011	-	BURPS1106A_A0564	-	hypothetical protein
558	 58.20	-1	556913..557101	-	62	126456995	-	BURPS1106A_A0565	-	hypothetical protein
559	 69.50	0	557090..559492	+	800	126456078	-	BURPS1106A_A0566	-	capsular polysaccharide biosynthesis/export protein
560	 68.56	0	559497..560714	+	405	126458405	-	BURPS1106A_A0567	-	chain length determinant protein
561	 62.68	0	560711..561487	+	258	126457460	rfbF	BURPS1106A_A0568	-	glucose-1-phosphate cytidylyltransferase
562	 69.24	0	561478..562563	+	361	126456612	rfbG	BURPS1106A_A0569	-	CDP-glucose 4,6-dehydratase
563	 66.89	0	562571..563923	+	450	126455766	rfbH	BURPS1106A_A0570	-	lipopolysaccharide biosynthesis protein rfbH
564	 66.55	0	563949..565709	+	586	126456516	-	BURPS1106A_A0571	-	aminotransferase
565	 80.19	+2	565755..565961	+	68	126456118	-	BURPS1106A_A0572	-	hypothetical protein
566	 68.95	0	565958..567313	+	451	126458507	-	BURPS1106A_A0573	-	hypothetical protein
567	 66.76	0	567328..568371	+	347	126457617	-	BURPS1106A_A0574	-	glycosyl transferase, group 2 family protein
568	 39.88	-2	568387..568554	+	55	126456352	-	BURPS1106A_A0575	-	hypothetical protein
569	 60.86	-1	568544..569800	+	418	126455474	-	BURPS1106A_A0576	-	heptosyltransferase
570	 65.03	0	569664..570761	+	365	126458147	-	BURPS1106A_A0577	-	heptosyltransferase family protein
571	 69.65	0	570754..571323	+	189	126456832	-	BURPS1106A_A0578	-	putative acetyltransferase
572	 67.53	0	571335..572381	+	348	126456781	-	BURPS1106A_A0579	-	glycosyl transferase, group 2 family protein
573	 64.38	0	572385..573434	+	349	126455903	-	BURPS1106A_A0580	-	hypothetical protein
574	 74.24	+1	573431..573562	+	43	126458220	-	BURPS1106A_A0581	-	hypothetical protein
575	 71.79	0	573630..573980	+	116	126456703	-	BURPS1106A_A0582	-	hypothetical protein
576	 70.00	0	574367..575266	-	299	126457173	-	BURPS1106A_A0583	-	LysR family transcriptional regulator
577	 67.91	0	575396..576121	+	241	126455934	-	BURPS1106A_A0585	-	cupin domain-containing protein
578	 75.24	+1	576102..576311	-	69	126456263	-	BURPS1106A_A0584	-	hypothetical protein
579	 71.66	0	576396..577076	+	226	126458479	-	BURPS1106A_A0586	-	hypothetical protein
580	 71.74	0	577106..578386	-	426	126458314	-	BURPS1106A_A0587	-	cyclic nucleotide regulated pyridine nucleotide-disulphide oxidoreductase, putative
581	 71.74	0	578494..579420	+	308	126457530	-	BURPS1106A_A0588	-	AraC family transcriptional regulator
582	 70.43	0	579479..580381	-	300	126455861	-	BURPS1106A_A0589	-	AraC family transcriptional regulator
583	 74.51	+1	580378..580734	-	118	126457963	-	BURPS1106A_A0590	-	hypothetical protein
584	 70.41	0	580731..581933	-	400	126457001	-	BURPS1106A_A0591	-	major facilitator family transporter
585	 73.60	0	581930..582232	-	100	126455772	-	BURPS1106A_A0592	-	hypothetical protein
586	 70.61	0	582339..583250	+	303	126456200	-	BURPS1106A_A0593	-	LysR family transcriptional regulator
587	 64.63	0	583525..584211	-	228	126456939	-	BURPS1106A_A0594	-	isochorismatase superfamily hydrolase
588	 67.82	0	584477..584650	+	57	126455963	-	BURPS1106A_A0596	-	hypothetical protein
589	 59.72	-1	584601..584744	-	47	126455708	-	BURPS1106A_A0595	-	hypothetical protein
590	 71.11	0	584743..585057	+	104	126457127	-	BURPS1106A_A0597	-	hypothetical protein
591	 69.40	0	585050..586948	+	632	126456603	-	BURPS1106A_A0598	-	amidohydrolase family protein
592	 74.16	+1	586945..587331	+	128	126456904	-	BURPS1106A_A0599	-	hypothetical protein
593	 72.06	0	587475..588401	+	308	126456224	-	BURPS1106A_A0600	-	hypothetical protein
594	 71.53	0	588398..590083	+	561	126458202	-	BURPS1106A_A0601	-	hypothetical protein
595	 78.27	+1	590157..590561	-	134	126455651	-	BURPS1106A_A0602	-	hypothetical protein
596	 68.86	0	590649..591470	+	273	126455749	cpoF	BURPS1106A_A0603	-	non-heme chloroperoxidase
597	 71.52	0	591535..592029	+	164	126458015	-	BURPS1106A_A0604	-	LysR family regulatory protein
598	 73.17	0	592347..592976	+	209	126457118	-	BURPS1106A_A0605	-	hypothetical protein
599	 67.16	0	593646..594251	+	201	126456324	-	BURPS1106A_A0606	-	flavin reductase family protein
600	 53.44	-2	594388..594765	-	125	126458524	-	BURPS1106A_A0607	-	hypothetical protein
601	 72.79	0	595086..596522	-	478	126457845	-	BURPS1106A_A0608	-	GntR family transcriptional regulator
602	 69.58	0	596509..597126	+	205	126456704	-	BURPS1106A_A0609	-	DJ-1/PfpI family protein
603	 78.74	+1	597322..597495	+	57	126456363	-	BURPS1106A_A0611	-	glycosyltransferase
604	 66.10	0	597482..598534	-	350	126456044	-	BURPS1106A_A0610	-	D-alanyl-D-alanine carboxypeptidase family protein
605	 35.96	-2	598602..598715	+	37	126455876	-	BURPS1106A_A0612	-	hypothetical protein
606	 72.96	0	598751..599020	-	89	126456531	-	BURPS1106A_A0613	-	hypothetical protein
607	 68.85	0	599023..599205	-	60	126457216	-	BURPS1106A_A0614	-	hypothetical protein
608	 68.78	0	599241..599429	+	62	126456708	-	BURPS1106A_A0615	-	hypothetical protein
609	 72.87	0	599445..599573	+	42	126455818	-	BURPS1106A_A0617	-	hypothetical protein
610	 71.43	0	599568..599693	-	41	126457787	-	BURPS1106A_A0616	-	hypothetical protein
611	 70.99	0	599682..601904	+	740	126456341	-	BURPS1106A_A0618	-	helix-hairpin-helix DNA-binding motif-containing protein
612	 69.25	0	601919..602422	-	167	126457235	-	BURPS1106A_A0619	-	metallophosphoesterase
613	 77.44	+1	602421..602717	+	98	126458534	-	BURPS1106A_A0620	-	hypothetical protein
614	 71.71	0	602714..604378	+	554	126456244	-	BURPS1106A_A0621	-	outer membrane efflux protein
615	 66.97	0	604375..605676	+	433	126455550	-	BURPS1106A_A0622	-	multicopper oxidase family protein
616	 64.71	0	605795..606151	+	118	126457310	-	BURPS1106A_A0623	-	hypothetical protein
617	 70.26	0	606192..606581	+	129	126458048	-	BURPS1106A_A0624	-	putative copper resistance protein CopC
618	 72.57	0	606578..607525	+	315	126455567	-	BURPS1106A_A0625	-	putative copper resistance protein D
619	 57.89	-1	607716..607829	+	37	126456445	-	BURPS1106A_A0626	-	hypothetical protein
620	 69.75	0	607826..609676	+	616	126457772	-	BURPS1106A_A0627	-	methyl-accepting chemotaxis protein
621	 69.45	0	609984..611276	-	430	126458511	-	BURPS1106A_A0628	-	oxidoreductase
622	 74.13	+1	611347..612753	-	468	126456038	-	BURPS1106A_A0629	-	oxidoreductase
623	 66.10	0	612782..614356	-	524	126456733	-	BURPS1106A_A0630	-	hypothetical protein
624	 66.99	0	614425..615354	-	309	126456024	potI	BURPS1106A_A0631	-	putrescine ABC transporter, permease protein PotI
625	 65.85	0	615351..616331	-	326	126456194	potH	BURPS1106A_A0632	-	putrescine ABC transporter, permease protein PotH
626	 65.02	0	616328..617482	-	384	126457099	potG	BURPS1106A_A0633	-	putrescine ABC transporter, ATP-binding protein
627	 64.46	0	617672..618892	-	406	126457538	potF	BURPS1106A_A0634	-	putrescine ABC transporter, periplasmic putrescine-binding protein
628	 67.58	0	618861..620279	-	472	126458516	-	BURPS1106A_A0635	-	putative aminotransferase
629	 64.12	0	620315..621649	-	444	126455597	glnA	BURPS1106A_A0636	-	glutamine synthetase catalytic domain
630	 71.16	0	621676..622476	-	266	126457802	-	BURPS1106A_A0637	-	glutamine amidotransferase
631	 50.37	-2	622431..622565	-	44	126457423	-	BURPS1106A_A0638	-	hypothetical protein
632	 72.59	0	622574..622708	-	44	126458097	-	BURPS1106A_A0639	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.