IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2769	 37.98	-2	2714177..2714305	+	42	126456402	-	BURPS1106A_A2783	-	hypothetical protein
2770	 68.35	0	2714373..2715383	+	336	126458009	-	BURPS1106A_A2784	-	fatty acid desaturase family protein
2771	 63.33	0	2715424..2715693	+	89	126456072	-	BURPS1106A_A2785	-	phosphopantetheine attachment site domain-containing protein
2772	 65.92	0	2715706..2716641	+	311	126457226	-	BURPS1106A_A2786	-	putative cyclopropane-fatty-acyl-phospholipid synthase
2773	 72.81	0	2716638..2717678	+	346	126456520	-	BURPS1106A_A2787	-	fatty acid desaturase family protein
2774	 67.54	0	2717719..2718744	+	341	126455780	-	BURPS1106A_A2788	-	amidohydrolase family protein
2775	 69.74	0	2718741..2720594	+	617	126457489	-	BURPS1106A_A2789	-	AMP-binding domain-containing protein
2776	 65.95	0	2720608..2721027	+	139	126457030	-	BURPS1106A_A2790	-	thioesterase family protein
2777	 69.86	0	2721034..2722005	+	323	126456063	-	BURPS1106A_A2791	-	hypothetical protein
2778	 67.59	0	2722030..2722461	+	143	126457998	-	BURPS1106A_A2792	-	hypothetical protein
2779	 62.93	0	2722484..2723071	+	195	126457059	-	BURPS1106A_A2793	-	NUDIX family hydrolase
2780	 64.20	0	2723308..2724036	+	242	126458030	-	BURPS1106A_A2794	-	ISRh1 transposase-like protein
2781	 38.10	-2	2724240..2724680	-	146	126457135	-	BURPS1106A_A2795	-	hypothetical protein
2782	 61.36	-1	2725064..2725195	+	43	126456723	-	BURPS1106A_A2796	-	transposase
2783	 61.87	0	2725240..2726073	-	277	126457426	-	BURPS1106A_A2797	-	A, transposase OrfB
2784	 56.82	-1	2726097..2726360	-	87	126458461	-	BURPS1106A_A2798	-	transposase subfamily protein
2785	 64.53	0	2726391..2726765	-	124	126455964	-	BURPS1106A_A2799	-	YD repeat-containing protein
2786	 62.41	0	2726984..2728744	-	586	126457349	-	BURPS1106A_A2800	-	outer membrane hemolysin activator protein
2787	 62.67	0	2728568..2728717	+	49	126458203	-	BURPS1106A_A2801	-	hypothetical protein
2788	 63.18	0	2729187..2738612	-	3141	126455471	-	BURPS1106A_A2802	-	haemagglutinin
2789	 62.09	0	2738764..2738916	-	50	126456434	-	BURPS1106A_A2803	-	hypothetical protein
2790	 59.09	-1	2738962..2739225	-	87	126455938	-	BURPS1106A_A2804	-	hypothetical protein
2791	 59.65	-1	2739497..2739610	-	37	126456883	-	BURPS1106A_A2805	-	transposase IS3/
2792	 60.76	-1	2739817..2744475	-	1552	126455872	-	BURPS1106A_A2806	-	YD repeat-/RHS repeat-containing protein
2793	 64.78	0	2744462..2745730	-	422	126456735	-	BURPS1106A_A2807	-	hypothetical protein
2794	 64.13	0	2745746..2747950	-	734	126457833	-	BURPS1106A_A2808	-	Rhs element Vgr protein
2795	 62.50	0	2747918..2748133	+	71	126458541	-	BURPS1106A_A2809	-	hypothetical protein
2796	 59.58	-1	2748367..2749410	-	347	126455606	-	BURPS1106A_A2810	-	hypothetical protein
2797	 64.21	0	2749407..2749895	-	162	126456267	-	BURPS1106A_A2811	-	transposase
2798	 63.22	0	2749925..2750272	-	115	126457344	-	BURPS1106A_A2812	-	TnpB protein
2799	 64.14	0	2750269..2750664	-	131	126458051	-	BURPS1106A_A2813	-	transposase
2800	 46.95	-2	2751109..2753076	-	655	126457368	-	BURPS1106A_A2814	-	hypothetical protein
2801	 57.94	-1	2753383..2755593	-	736	126458096	rafA	BURPS1106A_A2815	-	alpha-galactosidase
2802	 53.64	-2	2755559..2756410	-	283	126456139	-	BURPS1106A_A2816	-	putative carbohydrate ABC transporter, permease protein
2803	 54.76	-2	2756411..2757334	-	307	126456979	-	BURPS1106A_A2817	-	putative carbohydrate ABC transporter, permease protein
2804	 53.33	-2	2757397..2758596	-	399	126457138	-	BURPS1106A_A2818	-	carbohydrate ABC transporter periplasmic binding protein
2805	 54.50	-2	2758674..2758862	-	62	126457967	-	BURPS1106A_A2819	-	carbohydrate ABC transporter ATP-binding protein
2806	 56.14	-1	2759337..2759450	+	37	126456655	-	BURPS1106A_A2820	-	hypothetical protein
2807	 57.44	-1	2759961..2761856	-	631	126457112	-	BURPS1106A_A2821	-	hypothetical protein
2808	 57.51	-1	2762372..2763430	-	352	126457614	-	BURPS1106A_A2822	-	LacI family transcription regulator
2809	 58.53	-1	2763834..2764091	+	85	126455729	-	BURPS1106A_A2823	-	transposase
2810	 62.89	0	2764868..2765608	+	246	126458456	-	BURPS1106A_A2824	-	hypothetical protein
2811	 65.79	0	2766040..2766153	-	37	126456337	-	BURPS1106A_A2825	-	hypothetical protein
2812	 61.90	0	2766340..2767599	-	419	126457855	-	BURPS1106A_A2826	-	substrate-binding repeat-containing protein
2813	 64.42	0	2767559..2768269	-	236	126457149	-	BURPS1106A_A2827	-	hypothetical protein
2814	 65.26	0	2768285..2770489	-	734	126456235	-	BURPS1106A_A2828	-	Rhs element Vgr protein
2815	 70.45	0	2770486..2773152	-	888	126458366	-	BURPS1106A_A2829	-	putative ATP-dependent Clp protease, ATP-binding subunit ClpB
2816	 72.75	0	2773165..2774610	-	481	126457633	-	BURPS1106A_A2830	-	hypothetical protein
2817	 71.42	0	2774607..2776478	-	623	126456530	-	BURPS1106A_A2831	-	hypothetical protein
2818	 73.74	0	2776483..2777019	-	178	126455831	-	BURPS1106A_A2832	-	hypothetical protein
2819	 64.84	0	2777050..2777541	-	163	126457925	-	BURPS1106A_A2833	-	hypothetical protein
2820	 65.87	0	2777601..2779109	-	502	126455835	-	BURPS1106A_A2834	-	hypothetical protein
2821	 66.15	0	2779102..2779680	-	192	126457921	-	BURPS1106A_A2835	-	hypothetical protein
2822	 73.33	0	2779743..2780822	-	359	126456923	-	BURPS1106A_A2836	-	ImpA-related N-terminal family protein
2823	 74.48	+1	2780875..2783460	-	861	126457834	-	BURPS1106A_A2837	-	protein kinase
2824	 71.93	0	2783459..2783686	+	75	126455995	-	BURPS1106A_A2839	-	hypothetical protein
2825	 73.17	0	2783671..2784654	-	327	126458310	-	BURPS1106A_A2838	-	hypothetical protein
2826	 70.94	0	2784636..2788265	-	1209	126455694	-	BURPS1106A_A2840	-	ImcF-related protein
2827	 72.97	0	2788268..2789584	-	438	126458045	-	BURPS1106A_A2841	-	hypothetical protein
2828	 70.16	0	2789600..2791003	-	467	126455944	-	BURPS1106A_A2842	-	hypothetical protein
2829	 65.90	0	2791000..2791518	-	172	126456983	-	BURPS1106A_A2843	-	putative lipoprotein
2830	 65.90	0	2791714..2791974	-	86	126457525	-	BURPS1106A_A2844	-	hypothetical protein
2831	 68.33	0	2792200..2792559	+	119	126457322	-	BURPS1106A_A2845	-	putative lipoprotein
2832	 71.54	0	2792614..2794050	+	478	126457060	-	BURPS1106A_A2846	-	FHA domain-containing protein
2833	 71.81	0	2794094..2795998	-	634	126457093	-	BURPS1106A_A2847	-	hypothetical protein
2834	 75.81	+1	2796017..2796202	+	61	126456615	-	BURPS1106A_A2848	-	hypothetical protein
2835	 65.46	0	2796468..2797712	+	414	126455717	-	BURPS1106A_A2849	-	hypothetical protein
2836	 71.43	0	2797917..2798042	-	41	126458429	-	BURPS1106A_A2850	-	hypothetical protein
2837	 72.96	0	2798022..2798339	+	105	126458060	-	BURPS1106A_A2851	-	chorismate lyase
2838	 69.49	0	2798388..2798564	+	58	126455799	-	BURPS1106A_A2852	-	hypothetical protein
2839	 70.78	0	2799066..2799770	-	234	126456687	-	BURPS1106A_A2853	-	short chain dehydrogenase/reductase family oxidoreductase
2840	 66.67	0	2799910..2800023	-	37	126458497	-	BURPS1106A_A2854	-	hypothetical protein
2841	 72.46	0	2799952..2800866	+	304	126458455	-	BURPS1106A_A2855	-	LysR family transcriptional regulator
2842	 72.42	0	2801022..2802359	-	445	126456246	dsdA	BURPS1106A_A2856	-	D-serine dehydratase
2843	 52.59	-2	2802317..2802451	-	44	126455624	-	BURPS1106A_A2857	-	hypothetical protein
2844	 70.38	0	2802456..2803397	+	313	126458495	-	BURPS1106A_A2858	-	LysR family transcriptional regulator
2845	 63.40	0	2803466..2803618	+	50	126457436	-	BURPS1106A_A2859	-	hypothetical protein
2846	 57.52	-1	2803628..2803933	-	101	126456297	-	BURPS1106A_A2860	-	hypothetical protein
2847	 60.67	-1	2804156..2804305	-	49	126458236	-	BURPS1106A_A2861	-	hypothetical protein
2848	 64.30	0	2804406..2805080	-	224	126457329	-	BURPS1106A_A2862	-	ArsR family transcriptional regulator
2849	 67.21	0	2805153..2805893	+	246	126456047	-	BURPS1106A_A2863	-	metallo-beta-lactamase family protein
2850	 65.94	0	2805898..2807139	+	413	126455534	-	BURPS1106A_A2864	-	major facilitator family transporter
2851	 66.22	0	2807186..2808307	+	373	126458359	iscS-2	BURPS1106A_A2865	-	cysteine desulfurase
2852	 60.91	-1	2808726..2809142	-	138	126456754	-	BURPS1106A_A2866	-	hypothetical protein
2853	 68.94	0	2809314..2809445	-	43	126456350	-	BURPS1106A_A2867	-	hypothetical protein
2854	 68.01	0	2809668..2811002	+	444	126455493	-	BURPS1106A_A2868	-	major facilitator transporter
2855	 64.29	0	2811135..2811344	-	69	126458156	-	BURPS1106A_A2869	-	hypothetical protein
2856	 71.50	0	2811382..2811588	-	68	126457291	-	BURPS1106A_A2870	-	hypothetical protein
2857	 74.57	+1	2811630..2812553	+	307	126458321	-	BURPS1106A_A2871	-	LysR family transcriptional regulator
2858	 68.68	0	2812618..2813760	+	380	126457306	-	BURPS1106A_A2872	-	putative L-lactate dehydrogenase
2859	 70.79	0	2813944..2814792	-	282	126456940	-	BURPS1106A_A2873	-	fumarylacetoacetate hydrolase family protein
2860	 65.93	0	2814791..2814925	+	44	126455882	-	BURPS1106A_A2874	-	hypothetical protein
2861	 80.70	+2	2814929..2815042	-	37	126455538	-	BURPS1106A_A2875	-	hypothetical protein
2862	 50.00	-2	2815127..2815276	-	49	126458196	-	BURPS1106A_A2876	-	hypothetical protein
2863	 69.45	0	2815303..2816127	+	274	126458144	-	BURPS1106A_A2877	-	IclR family transcriptional regulator
2864	 73.51	0	2816487..2817830	+	447	126457672	-	BURPS1106A_A2878	-	indole acetimide hydrolase
2865	 64.13	0	2818016..2818567	+	183	126456709	-	BURPS1106A_A2879	-	hypothetical protein
2866	 63.57	0	2818682..2818810	+	42	126456013	-	BURPS1106A_A2880	-	hypothetical protein
2867	 66.67	0	2818976..2819089	-	37	126456535	-	BURPS1106A_A2881	-	hypothetical protein
2868	 70.11	0	2819086..2821497	-	803	126456794	-	BURPS1106A_A2882	-	acetyltransferase
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.