IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2671	 73.33	0	2621603..2622667	+	354	126457947	-	BURPS1106A_A2684	-	hypothetical protein
2672	 67.45	0	2622758..2624041	+	427	126457431	-	BURPS1106A_A2685	-	hypothetical protein
2673	 69.22	0	2624771..2626141	+	456	126458529	-	BURPS1106A_A2686	-	hypothetical protein
2674	 69.45	0	2626173..2627501	+	442	126457279	-	BURPS1106A_A2688	-	putative cellulase
2675	 62.50	0	2627485..2627604	-	39	126455524	-	BURPS1106A_A2687	-	hypothetical protein
2676	 68.06	0	2627626..2629989	+	787	126458233	-	BURPS1106A_A2689	-	chain length determinant family protein
2677	 57.72	-1	2630097..2630219	-	40	126458327	-	BURPS1106A_A2690	-	hypothetical protein
2678	 66.32	0	2630486..2631652	+	388	126455958	-	BURPS1106A_A2691	-	hypothetical protein
2679	 65.81	0	2631928..2632278	+	116	126455611	-	BURPS1106A_A2692	-	hypothetical protein
2680	 61.23	-1	2632561..2632836	+	91	126456845	-	BURPS1106A_A2693	-	hypothetical protein
2681	 66.67	0	2632849..2634117	+	422	126457334	-	BURPS1106A_A2694	-	cation diffusion facilitator family transporter
2682	 72.11	0	2634621..2634767	-	48	126456841	-	BURPS1106A_A2695	-	hypothetical protein
2683	 62.58	0	2634897..2635949	+	350	126457540	-	BURPS1106A_A2696	-	putative deoxyribonuclease-2
2684	 67.49	0	2636021..2638927	+	968	126458618	-	BURPS1106A_A2697	-	hypothetical protein
2685	 69.60	0	2638924..2639706	+	260	126455540	-	BURPS1106A_A2698	-	hypothetical protein
2686	 68.41	0	2639703..2640506	+	267	126456426	-	BURPS1106A_A2699	-	hypothetical protein
2687	 66.48	0	2640507..2642129	+	540	126457258	-	BURPS1106A_A2700	-	Ser/Thr protein phosphatase family protein
2688	 66.47	0	2642126..2643142	+	338	126458168	-	BURPS1106A_A2701	-	hypothetical protein
2689	 65.19	0	2643165..2644319	+	384	126458361	-	BURPS1106A_A2702	-	hypothetical protein
2690	 75.00	+1	2644316..2644435	+	39	126456976	-	BURPS1106A_A2704	-	hypothetical protein
2691	 67.29	0	2644423..2645391	-	322	126458063	-	BURPS1106A_A2703	-	hypothetical protein
2692	 68.74	0	2645446..2646120	+	224	126455816	-	BURPS1106A_A2706	-	Uracil DNA glycosylase family protein
2693	 69.17	0	2645449..2645568	-	39	126456406	-	BURPS1106A_A2705	-	hypothetical protein
2694	 71.21	0	2646255..2648189	-	644	126458098	-	BURPS1106A_A2707	-	x-prolyl-dipeptidyl aminopeptidase
2695	 76.19	+1	2648224..2648475	-	83	126458402	-	BURPS1106A_A2708	-	hypothetical protein
2696	 70.48	0	2648489..2649982	-	497	126455665	mprA	BURPS1106A_A2709	-	serine metalloprotease
2697	 65.62	0	2650034..2650225	+	63	126458463	-	BURPS1106A_A2710	-	hypothetical protein
2698	 59.11	-1	2650322..2650546	+	74	126458506	-	BURPS1106A_A2712	-	hypothetical protein
2699	 59.06	-1	2650539..2650814	-	91	126457848	-	BURPS1106A_A2711	-	hypothetical protein
2700	 55.56	-2	2650811..2651044	-	77	126457467	-	BURPS1106A_A2713	-	hypothetical protein
2701	 65.73	0	2651129..2651341	-	70	126456780	-	BURPS1106A_A2714	-	hypothetical protein
2702	 48.48	-2	2651473..2651670	+	65	126456853	-	BURPS1106A_A2715	-	hypothetical protein
2703	 63.78	0	2651692..2652384	+	230	126458151	-	BURPS1106A_A2716	-	DNA-binding heavy metal response regulator
2704	 65.70	0	2652381..2653835	+	484	126457450	-	BURPS1106A_A2717	-	heavy metal sensor histidine kinase
2705	 63.31	0	2653911..2654327	+	138	126456299	-	BURPS1106A_A2718	-	hypothetical protein
2706	 64.75	0	2654480..2655733	-	417	126455655	oxa	BURPS1106A_A2719	-	class D beta-lactamase
2707	 67.09	0	2655936..2658800	-	954	126458596	-	BURPS1106A_A2720	-	beta-propeller repeat-containing protein
2708	 62.63	0	2658897..2659094	+	65	126457739	-	BURPS1106A_A2721	-	hypothetical protein
2709	 70.25	0	2659205..2660041	-	278	126457903	-	BURPS1106A_A2722	-	FTR1 family iron permease
2710	 57.31	-1	2660055..2660396	-	113	126457224	-	BURPS1106A_A2723	-	hypothetical protein
2711	 61.02	-1	2660431..2660784	+	117	126456481	-	BURPS1106A_A2724	-	hypothetical protein
2712	 68.15	0	2660918..2661322	-	134	126455698	-	BURPS1106A_A2725	-	hypothetical protein
2713	 61.85	-1	2661357..2661605	-	82	126458013	-	BURPS1106A_A2726	-	hypothetical protein
2714	 63.49	0	2661934..2662656	-	240	126457096	-	BURPS1106A_A2727	-	solute-binding family 1 protein
2715	 59.36	-1	2662672..2662890	-	72	126456920	-	BURPS1106A_A2728	-	hypothetical protein
2716	 64.42	0	2663139..2663627	+	162	126456064	-	BURPS1106A_A2729	-	hypothetical protein
2717	 62.18	0	2664279..2664590	-	103	126458364	tISRso	BURPS1106A_A2730	-	isrso12-transposase orfa
2718	 41.03	-2	2664652..2664846	+	64	126457767	-	BURPS1106A_A2731	-	hypothetical protein
2719	 52.17	-2	2665263..2665469	+	68	126456599	-	BURPS1106A_A2732	-	hypothetical protein
2720	 64.01	0	2665466..2667082	+	538	126455699	-	BURPS1106A_A2733	-	tryptophan halogenase PrnA
2721	 69.28	0	2667133..2668167	+	344	126456146	-	BURPS1106A_A2734	-	PrnB
2722	 63.90	0	2668218..2669918	+	566	126457167	-	BURPS1106A_A2735	-	halogenase PrnC
2723	 67.48	0	2669943..2671055	+	370	126457691	-	BURPS1106A_A2736	-	PrnD
2724	 66.67	0	2671157..2671297	-	46	126457007	-	BURPS1106A_A2737	-	hypothetical protein
2725	 57.59	-1	2671309..2672277	-	322	126455943	-	BURPS1106A_A2738	-	hypothetical protein
2726	 62.68	0	2672840..2673466	+	208	126458448	tISRso	BURPS1106A_A2739	-	isrso7-transposase
2727	 68.04	0	2673688..2675511	-	607	126457364	glmS	BURPS1106A_A2740	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
2728	 64.21	0	2676728..2678842	-	704	126456689	-	BURPS1106A_A2741	-	hypothetical protein
2729	 67.16	0	2679172..2679987	-	271	126456004	-	BURPS1106A_A2742	-	hypothetical protein
2730	 69.77	0	2680000..2681322	-	440	126458053	-	BURPS1106A_A2743	-	putative lipoprotein
2731	 74.12	+1	2681336..2682328	-	330	126457383	-	BURPS1106A_A2744	-	hypothetical protein
2732	 70.19	0	2682332..2683894	-	520	126456815	-	BURPS1106A_A2745	-	putative inner membrane glycosyl transferase
2733	 74.42	+1	2683970..2684782	+	270	126457288	-	BURPS1106A_A2746	-	hypothetical protein
2734	 70.74	0	2684870..2685139	+	89	126458177	-	BURPS1106A_A2747	-	hypothetical protein
2735	 68.15	0	2685159..2686373	+	404	126455464	-	BURPS1106A_A2748	-	UDP-N-acetylglucosamine 2-epimerase
2736	 76.30	+1	2687429..2687563	-	44	126457062	-	BURPS1106A_A2750	-	hypothetical protein
2737	 73.29	0	2687643..2688548	-	301	126457983	-	BURPS1106A_A2751	-	LysR family transcriptional regulator
2738	 66.40	0	2688660..2689415	+	251	126458484	-	BURPS1106A_A2752	-	TerC family membrane protein
2739	 65.47	0	2689559..2689891	+	110	126456115	-	BURPS1106A_A2753	-	hypothetical protein
2740	 79.89	+1	2689892..2690065	-	57	126457748	-	BURPS1106A_A2754	-	hypothetical protein
2741	 69.93	0	2690129..2690557	+	142	126458259	-	BURPS1106A_A2755	-	hypothetical protein
2742	 66.32	0	2690777..2692198	-	473	126458176	-	BURPS1106A_A2756	-	sphingosine-1-phosphate lyase
2743	 64.35	0	2692398..2693303	+	301	126455552	-	BURPS1106A_A2757	-	hypothetical protein
2744	 74.30	+1	2693401..2693649	-	82	126456768	-	BURPS1106A_A2758	-	hypothetical protein
2745	 74.24	+1	2693667..2693930	+	87	126457267	-	BURPS1106A_A2759	-	hypothetical protein
2746	 69.80	0	2693942..2695219	-	425	126455913	-	BURPS1106A_A2760	-	zinc-binding dehydrogenase family oxidoreductase
2747	 66.67	0	2695492..2695623	+	43	126456387	-	BURPS1106A_A2762	-	hypothetical protein
2748	 66.73	0	2695604..2697100	-	498	126456827	-	BURPS1106A_A2761	-	sphingosine-1-phosphate lyase
2749	 47.01	-2	2697099..2697215	+	38	126458598	-	BURPS1106A_A2763	-	hypothetical protein
2750	 69.89	0	2697403..2699016	-	537	126457108	-	BURPS1106A_A2764	-	carbohydrate kinase
2751	 69.64	0	2699013..2699180	-	55	126458041	-	BURPS1106A_A2765	-	hypothetical protein
2752	 63.67	0	2699195..2699494	+	99	126458584	-	BURPS1106A_A2766	-	ABC transporter
2753	 66.67	0	2699610..2700026	-	138	126457699	-	BURPS1106A_A2767	-	hypothetical protein
2754	 66.81	0	2700203..2700877	-	224	126456353	-	BURPS1106A_A2768	-	TetR family transcriptional regulator
2755	 62.79	0	2700876..2701004	+	42	126455472	-	BURPS1106A_A2769	-	hypothetical protein
2756	 62.50	0	2701166..2702269	+	367	126457312	-	BURPS1106A_A2770	-	transposase, IS4
2757	 67.95	0	2702430..2703602	-	390	126456389	-	BURPS1106A_A2771	-	acyl-CoA dehydrogenase
2758	 64.72	0	2703597..2703905	+	102	126456831	-	BURPS1106A_A2772	-	hypothetical protein
2759	 69.45	0	2703931..2704791	+	286	126455952	-	BURPS1106A_A2773	-	short chain dehydrogenase/reductase family oxidoreductase
2760	 69.64	0	2704793..2706409	+	538	126455504	accB	BURPS1106A_A2774	-	acetyl-CoA carboxylase carboxyltransferase
2761	 66.84	0	2706422..2707573	+	383	126458589	-	BURPS1106A_A2775	-	acyl-CoA dehydrogenase
2762	 77.11	+1	2707580..2708422	+	280	126457123	-	BURPS1106A_A2776	-	enoyl-CoA hydratase/isomerase family protein
2763	 72.89	0	2708419..2710425	+	668	126458208	-	BURPS1106A_A2777	-	carbamoyl-phosphate synthase L chain/biotin carboxylase
2764	 69.38	0	2710460..2711344	+	294	126455904	-	BURPS1106A_A2778	-	hypothetical protein
2765	 76.33	+1	2711341..2711547	+	68	126456778	-	BURPS1106A_A2779	-	hypothetical protein
2766	 69.34	0	2711572..2713368	+	598	126458386	-	BURPS1106A_A2780	-	AMP-binding domain-containing protein
2767	 74.70	+1	2713320..2713655	+	111	126458077	-	BURPS1106A_A2781	-	hypothetical protein
2768	 51.23	-2	2713940..2714101	-	53	126455523	-	BURPS1106A_A2782	-	hypothetical protein
2769	 37.98	-2	2714177..2714305	+	42	126456402	-	BURPS1106A_A2783	-	hypothetical protein
2770	 68.35	0	2714373..2715383	+	336	126458009	-	BURPS1106A_A2784	-	fatty acid desaturase family protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.