IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
221	 58.33	-1	204714..204833	-	39	126458018	-	BURPS1106A_A0220	-	hypothetical protein
222	 62.02	0	204857..205222	+	121	126456637	-	BURPS1106A_A0222	-	hypothetical protein
223	 55.78	-1	205311..205457	+	48	126457487	-	BURPS1106A_A0223	-	hypothetical protein
224	 65.27	0	205454..207595	+	713	126456001	-	BURPS1106A_A0224	-	hypothetical protein
225	 56.97	-1	207592..207756	+	54	126456777	-	BURPS1106A_A0225	-	hypothetical protein
226	 68.49	0	207806..210766	+	986	126457698	-	BURPS1106A_A0226	-	putative alpha-1,2-mannosidase
227	 57.71	-1	210832..211110	-	92	126457849	-	BURPS1106A_A0227	-	hypothetical protein
228	 67.71	0	211366..212424	+	352	126456717	pvcA	BURPS1106A_A0228	-	pyoverdine chromophore biosynthetic protein PvcA
229	 69.84	0	212421..213335	+	304	126455993	pvcB	BURPS1106A_A0229	-	pyoverdine biosynthesis protein PvcB
230	 67.07	0	213361..214845	+	494	126456550	pvcC	BURPS1106A_A0230	-	chromophore biosynthetic protein PvcC
231	 69.45	0	214891..216759	+	622	126455483	asnB	BURPS1106A_A0231	-	asparagine synthase (glutamine-hydrolyzing)
232	 72.94	0	216788..217759	+	323	126458559	-	BURPS1106A_A0232	-	zinc-binding dehydrogenase family oxidoreductase
233	 70.98	0	217814..218740	+	308	126457734	-	BURPS1106A_A0233	-	aromatic ring-opening dioxygenase
234	 67.78	0	218984..220330	-	448	126457796	-	BURPS1106A_A0234	-	LysR family transcriptional regulator
235	 71.79	0	220915..221148	-	77	126456829	-	BURPS1106A_A0235	-	hypothetical protein
236	 71.52	0	221168..225244	-	1358	126455953	-	BURPS1106A_A0236	-	ImcF/SciS family protein
237	 71.33	0	225273..226538	-	421	126457554	-	BURPS1106A_A0237	-	hypothetical protein
238	 68.97	0	226627..227973	-	448	126457249	-	BURPS1106A_A0238	-	hypothetical protein
239	 71.23	0	227995..228498	-	167	126456114	sciN	BURPS1106A_A0239	-	SciN protein
240	 78.63	+1	228511..228627	+	38	126457243	-	BURPS1106A_A0241	-	hypothetical protein
241	 62.96	0	228605..229090	-	161	126457863	sciM	BURPS1106A_A0240	-	SciM protein
242	 64.67	0	229207..230706	-	499	126456800	-	BURPS1106A_A0242	-	hypothetical protein
243	 68.04	0	230741..231322	-	193	126455789	-	BURPS1106A_A0243	-	hypothetical protein
244	 71.90	0	231358..234297	-	979	126456099	clpB	BURPS1106A_A0244	-	chaperone clpB
245	 74.41	+1	234829..235551	+	240	126458617	-	BURPS1106A_A0245	-	hypothetical protein
246	 75.57	+1	235548..236513	+	321	126458224	-	BURPS1106A_A0246	-	ImpE/SciE family protein
247	 68.90	0	236500..237081	+	193	126457375	-	BURPS1106A_A0247	-	hypothetical protein
248	 69.37	0	237112..239001	+	629	126456248	-	BURPS1106A_A0248	-	hypothetical protein
249	 71.45	0	239001..240086	+	361	126455565	-	BURPS1106A_A0249	-	hypothetical protein
250	 73.71	0	240149..241198	+	349	126457491	-	BURPS1106A_A0250	-	ImpA-related N-terminal family protein
251	 67.40	0	241270..243597	+	775	126458536	-	BURPS1106A_A0251	-	Rhs element Vgr protein
252	 69.65	0	243629..246106	+	825	126455703	-	BURPS1106A_A0252	-	pentapeptide repeat-containing protein
253	 67.31	0	246103..247185	+	360	126456567	-	BURPS1106A_A0253	-	pentapeptide repeat-containing protein
254	 64.06	0	247179..247370	+	63	126455784	-	BURPS1106A_A0254	-	hypothetical protein
255	 68.03	0	247367..248026	+	219	126456517	-	BURPS1106A_A0255	-	hypothetical protein
256	 65.09	0	248067..248447	+	126	126457174	-	BURPS1106A_A0256	-	hypothetical protein
257	 67.80	0	248514..248690	+	58	126455815	-	BURPS1106A_A0257	-	hypothetical protein
258	 66.46	0	249187..251103	-	638	126457552	-	BURPS1106A_A0258	-	hypothetical protein
259	 63.22	0	251086..251346	+	86	126458277	-	BURPS1106A_A0259	-	hypothetical protein
260	 70.81	0	251443..252336	-	297	126455777	-	BURPS1106A_A0260	-	LysR family transcriptional regulator
261	 65.38	0	252432..253208	+	258	126456447	-	BURPS1106A_A0261	-	quinone family NAD(P)H dehydrogenase
262	 72.64	0	253123..253674	+	183	126458581	-	BURPS1106A_A0262	-	AraC family transcriptional regulator
263	 67.44	0	254208..255503	-	431	126458210	-	BURPS1106A_A0263	-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein
264	 66.92	0	255787..256179	-	130	126458421	-	BURPS1106A_A0264	-	glyoxalase family protein
265	 69.18	0	256219..256536	-	105	126456132	-	BURPS1106A_A0265	-	hypothetical protein
266	 69.39	0	256551..257396	-	281	126457036	-	BURPS1106A_A0266	-	hypothetical protein
267	 76.11	+1	257371..257709	+	112	126456241	-	BURPS1106A_A0267	-	hypothetical protein
268	 64.80	0	257736..258056	+	106	126455742	-	BURPS1106A_A0268	-	hypothetical protein
269	 66.81	0	258183..259538	-	451	126457490	-	BURPS1106A_A0269	-	hypothetical protein
270	 72.14	0	259725..260729	-	334	126457107	-	BURPS1106A_A0270	-	biotin-dependent carboxylase domain-containing protein
271	 65.18	0	260719..261594	-	291	126456638	-	BURPS1106A_A0271	-	allophanate hydrolase, subunit 1
272	 71.85	0	261591..263036	-	481	126455667	accC	BURPS1106A_A0272	-	acetyl-CoA carboxylase biotin carboxylase subunit
273	 69.55	0	263042..263284	-	80	126458505	-	BURPS1106A_A0273	-	hypothetical protein
274	 69.04	0	263298..264098	-	266	126457703	-	BURPS1106A_A0274	-	hypothetical protein
275	 66.67	0	264261..265280	+	339	126456804	-	BURPS1106A_A0275	-	LysR family transcriptional regulator
276	 66.67	0	265583..265711	-	42	126455896	-	BURPS1106A_A0276	-	hypothetical protein
277	 69.57	0	265826..266101	+	91	126456739	-	BURPS1106A_A0277	-	hypothetical protein
278	 70.88	0	266076..268589	+	837	126456574	-	BURPS1106A_A0278	-	putative penicillin amidase
279	 70.16	0	268625..269914	+	429	126455681	pip	BURPS1106A_A0279	-	proline iminopeptidase
280	 68.36	0	270138..270962	+	274	126458431	-	BURPS1106A_A0280	-	hypothetical protein
281	 72.58	0	271073..273085	-	670	126457434	-	BURPS1106A_A0281	-	putative lipoprotein
282	 71.67	0	273123..273242	-	39	126456881	-	BURPS1106A_A0282	-	hypothetical protein
283	 68.52	0	273294..273563	-	89	126457575	-	BURPS1106A_A0283	-	hypothetical protein
284	 65.22	0	273631..273906	-	91	126458597	-	BURPS1106A_A0284	-	hypothetical protein
285	 70.39	0	273974..275665	-	563	126456232	-	BURPS1106A_A0285	-	methyl-accepting chemotaxis protein
286	 72.10	0	275680..275955	-	91	126456467	-	BURPS1106A_A0286	-	hypothetical protein
287	 73.81	0	275952..278036	-	694	126457831	prpR	BURPS1106A_A0287	-	propionate catabolism operon regulatory protein PrpR
288	 67.45	0	278253..279146	+	297	126456786	prpB	BURPS1106A_A0288	-	2-methylisocitrate lyase
289	 64.88	0	279195..280367	+	390	126455916	prpC	BURPS1106A_A0289	-	methylcitrate synthase
290	 69.02	0	280441..283035	+	864	126455527	acnD	BURPS1106A_A0290	-	aconitate hydratase
291	 70.86	0	283193..284383	+	396	126458213	prpF	BURPS1106A_A0291	-	AcnD-accessory protein PrpF
292	 67.12	0	284436..284879	-	147	126457687	-	BURPS1106A_A0292	-	hypothetical protein
293	 79.74	+1	285083..285235	+	50	126456355	-	BURPS1106A_A0293	-	hypothetical protein
294	 68.86	0	285244..285471	-	75	126455865	-	BURPS1106A_A0294	-	hypothetical protein
295	 64.58	0	285947..286138	+	63	126458554	-	BURPS1106A_A0295	-	hypothetical protein
296	 67.14	0	286231..286869	+	212	126458230	-	BURPS1106A_A0296	-	hypothetical protein
297	 65.99	0	286922..287512	+	196	126455936	-	BURPS1106A_A0297	-	hypothetical protein
298	 69.17	0	287591..289066	+	491	126458065	-	BURPS1106A_A0298	-	radical SAM domain-containing protein
299	 78.72	+1	289075..289215	+	46	126456164	-	BURPS1106A_A0299	-	hypothetical protein
300	 70.26	0	289266..290879	+	537	126456850	-	BURPS1106A_A0300	-	methyl-accepting chemotaxis protein
301	 74.43	+1	291062..292066	-	334	126457601	-	BURPS1106A_A0301	-	major facilitator superfamily permease
302	 73.89	0	292075..292434	-	119	126457606	-	BURPS1106A_A0302	-	RemN protein
303	 74.36	+1	292418..292651	+	77	126458286	-	BURPS1106A_A0303	-	pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase
304	 74.83	+1	292809..293690	+	293	126456640	-	BURPS1106A_A0304	-	LysR family transcriptional regulator
305	 71.38	0	293773..294876	-	367	126457190	-	BURPS1106A_A0305	-	isomerase
306	 68.58	0	294951..295682	+	243	126458520	-	BURPS1106A_A0307	-	MgtC family membrane protein
307	 72.75	0	295648..296025	-	125	126456184	-	BURPS1106A_A0306	-	hypothetical protein
308	 74.28	+1	296002..297210	+	402	126455933	-	BURPS1106A_A0308	-	hypothetical protein
309	 60.90	-1	297407..297562	+	51	126456824	-	BURPS1106A_A0309	-	hypothetical protein
310	 73.56	0	297826..298086	-	86	126456821	-	BURPS1106A_A0310	-	hypothetical protein
311	 68.12	0	298083..298220	-	45	126458131	-	BURPS1106A_A0311	-	hypothetical protein
312	 65.00	0	298602..299081	+	159	126455770	-	BURPS1106A_A0312	-	acetyltransferase
313	 70.73	0	299165..299287	-	40	126456274	-	BURPS1106A_A0313	-	hypothetical protein
314	 69.14	0	299284..299727	-	147	126456444	-	BURPS1106A_A0314	-	hypothetical protein
315	 61.79	-1	299762..299884	-	40	126457145	-	BURPS1106A_A0315	-	hypothetical protein
316	 73.90	0	300205..303396	-	1063	126458583	-	BURPS1106A_A0316	-	cation-transporting ATPase membrane protein
317	 69.35	0	303728..304843	+	371	126457773	-	BURPS1106A_A0317	-	hypothetical protein
318	 72.79	0	305013..305453	-	146	126455929	-	BURPS1106A_A0318	-	hypothetical protein
319	 74.12	+1	305617..307038	+	473	126457432	-	BURPS1106A_A0319	-	putative lipoprotein
320	 70.44	0	307035..307193	+	52	126457701	-	BURPS1106A_A0320	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.