IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2411	 66.67	0	2395764..2396183	+	139	126456050	-	BURPS1106A_A2423	-	organic hydroperoxide resistance protein
2412	 60.38	-1	2396296..2396454	-	52	126456269	-	BURPS1106A_A2424	-	hypothetical protein
2413	 70.23	0	2396551..2397699	-	382	126456391	-	BURPS1106A_A2425	-	PHB depolymerase family esterase
2414	 72.39	0	2397950..2398648	+	232	126455510	-	BURPS1106A_A2426	-	PAP2 family membrane protein
2415	 70.62	0	2399096..2399929	+	277	126458613	modA	BURPS1106A_A2427	-	molybdate ABC transporter, periplasmic molybdate-binding protein
2416	 72.00	0	2399942..2400616	+	224	126457722	modB	BURPS1106A_A2428	-	molybdate ABC transporter, permease protein
2417	 68.23	0	2400618..2401319	+	233	126456120	-	BURPS1106A_A2429	-	putative molybdate ABC transporter, ATP-binding protein
2418	 79.25	+1	2401316..2401474	+	52	126458188	-	BURPS1106A_A2431	-	hypothetical protein
2419	 66.67	0	2401465..2401584	-	39	126458445	-	BURPS1106A_A2430	-	hypothetical protein
2420	 77.04	+1	2401655..2401789	-	44	126457297	-	BURPS1106A_A2432	-	hypothetical protein
2421	 70.44	0	2401862..2402710	-	282	126457156	modE	BURPS1106A_A2433	-	molybdenum transporter/regulator protein ModE
2422	 73.49	0	2402745..2404694	-	649	126456270	-	BURPS1106A_A2434	-	CHAD domain-containing protein
2423	 61.46	-1	2404892..2405275	-	127	126458528	-	BURPS1106A_A2435	-	4-oxalocrotonate tautomerase
2424	 76.71	+1	2405373..2406248	+	291	126456229	-	BURPS1106A_A2436	-	LysR family transcriptional regulator
2425	 69.92	0	2406315..2407235	+	306	126457076	-	BURPS1106A_A2437	-	hypothetical protein
2426	 75.13	+1	2407328..2408107	+	259	126457054	-	BURPS1106A_A2438	-	putative sensor histidine kinase
2427	 66.52	0	2408193..2409533	+	446	126458125	-	BURPS1106A_A2439	-	putative transporter
2428	 74.76	+1	2409530..2410159	+	209	126455827	-	BURPS1106A_A2440	-	putative thiamine-phosphate pyrophosphorylase ThiE
2429	 71.47	0	2410318..2411961	-	547	126456738	-	BURPS1106A_A2441	-	putative glycosyl hydrolase
2430	 72.83	0	2412237..2412950	+	237	126457111	-	BURPS1106A_A2442	-	hypothetical protein
2431	 63.16	0	2413299..2413754	+	151	126457728	-	BURPS1106A_A2443	-	YbaK/prolyl-tRNA synthetase domain-containing protein
2432	 65.70	0	2413819..2415057	-	412	126455676	-	BURPS1106A_A2444	-	FMN-dependent dehydrogenase
2433	 58.33	-1	2415110..2415229	+	39	126455902	-	BURPS1106A_A2445	-	hypothetical protein
2434	 67.40	0	2415310..2415720	+	136	126455806	-	BURPS1106A_A2446	-	putative transposase
2435	 60.94	-1	2415962..2416555	-	197	126456469	-	BURPS1106A_A2447	-	hypothetical protein
2436	 64.68	0	2416651..2417505	+	284	126457395	-	BURPS1106A_A2449	-	AraC family transcriptional regulator
2437	 72.33	0	2417502..2417660	-	52	126458064	-	BURPS1106A_A2448	-	hypothetical protein
2438	 58.10	-1	2417738..2418064	+	108	126455908	-	BURPS1106A_A2450	-	hypothetical protein
2439	 58.43	-1	2418247..2419278	+	343	126458427	-	BURPS1106A_A2451	-	hypothetical protein
2440	 64.68	0	2419345..2419947	-	200	126458403	-	BURPS1106A_A2452	-	LysE family translocator protein
2441	 66.67	0	2419985..2420398	-	137	126457492	-	BURPS1106A_A2453	-	cupin domain-containing protein
2442	 67.34	0	2420445..2421488	-	347	126457348	-	BURPS1106A_A2454	-	4-hydroxy-2-ketovalerate aldolase
2443	 63.53	0	2421485..2422378	-	297	126457914	-	BURPS1106A_A2455	-	acetaldehyde dehydrogenase
2444	 69.16	0	2422375..2423217	-	280	126458266	-	BURPS1106A_A2456	-	putative thioesterase
2445	 65.21	0	2423214..2424176	-	320	126457713	ilvE	BURPS1106A_A2457	-	branched-chain amino acid aminotransferase
2446	 68.27	0	2424173..2424856	-	227	126456868	-	BURPS1106A_A2458	-	DlpA domain-containing protein
2447	 67.92	0	2424864..2425661	-	265	126456127	-	BURPS1106A_A2459	-	putative thioesterase
2448	 62.69	0	2425665..2426570	-	301	126458396	-	BURPS1106A_A2460	-	phytanoyl-CoA dioxygenase (PhyH) family protein
2449	 59.39	-1	2426667..2426927	-	86	126457320	-	BURPS1106A_A2461	-	phosphopantetheine attachment site domain-containing protein
2450	 65.22	0	2426924..2428513	-	529	126456487	-	BURPS1106A_A2462	-	amino acid adenylation domain-containing protein
2451	 67.72	0	2428561..2428845	-	94	126455629	-	BURPS1106A_A2463	-	hypothetical protein
2452	 71.31	0	2429749..2430114	-	121	126457934	-	BURPS1106A_A2464	-	ArsR family transcriptional regulator
2453	 65.15	0	2430098..2430559	-	153	126456281	-	BURPS1106A_A2465	-	hypothetical protein
2454	 66.67	0	2430556..2430684	-	42	126455962	-	BURPS1106A_A2466	-	hypothetical protein
2455	 64.37	0	2430706..2431359	-	217	126458085	-	BURPS1106A_A2467	-	hypothetical protein
2456	 71.43	0	2431481..2432215	+	244	126457842	-	BURPS1106A_A2468	-	Ser/Thr protein phosphatase family protein
2457	 68.08	0	2432309..2433016	-	235	126456721	-	BURPS1106A_A2469	-	hypothetical protein
2458	 67.14	0	2433007..2433426	-	139	126456312	-	BURPS1106A_A2470	-	hypothetical protein
2459	 64.96	0	2433734..2433850	-	38	126455631	-	BURPS1106A_A2471	-	hypothetical protein
2460	 63.59	0	2434157..2435065	-	302	126455734	-	BURPS1106A_A2472	-	hypothetical protein
2461	 74.40	+1	2435083..2435289	+	68	126457621	-	BURPS1106A_A2473	-	hypothetical protein
2462	 65.79	0	2435569..2435910	+	113	126457379	-	BURPS1106A_A2474	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2463	 71.88	0	2435973..2436740	+	255	126455888	-	BURPS1106A_A2475	-	AraC family transcriptional regulator
2464	 71.21	0	2437029..2438195	-	388	126457199	-	BURPS1106A_A2476	-	glycosyl transferase, group 1 family protein
2465	 67.93	0	2438195..2439379	-	394	126457677	-	BURPS1106A_A2477	-	glycosyl transferase, group 1 family protein
2466	 66.46	0	2439376..2440851	-	491	126456642	-	BURPS1106A_A2478	-	hypothetical protein
2467	 70.18	0	2440863..2442002	-	379	126455615	-	BURPS1106A_A2479	-	hypothetical protein
2468	 71.66	0	2442046..2443026	-	326	126458056	-	BURPS1106A_A2480	-	glycosyl transferase, group 2 family protein
2469	 67.66	0	2443023..2445242	-	739	126457439	-	BURPS1106A_A2481	-	chain length determinant protein
2470	 66.67	0	2445293..2446468	-	391	126456441	-	BURPS1106A_A2482	-	capsular polysaccharide biosynthesis/export protein
2471	 66.44	0	2446462..2446896	-	144	126455601	-	BURPS1106A_A2483	-	low molecular weight phosphotyrosine protein phosphatase
2472	 68.99	0	2446919..2448340	-	473	126458049	udg	BURPS1106A_A2484	-	UDP-glucose 6-dehydrogenase
2473	 64.06	0	2448386..2449768	-	460	126456541	-	BURPS1106A_A2485	-	undecaprenyl-phosphate glucose phosphotransferase
2474	 40.82	-2	2449837..2449983	+	48	126457445	-	BURPS1106A_A2486	-	hypothetical protein
2475	 66.80	0	2450198..2451718	+	506	126457915	-	BURPS1106A_A2487	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
2476	 69.35	0	2451791..2452795	-	334	126457649	-	BURPS1106A_A2488	-	hypothetical protein
2477	 63.57	0	2453372..2453953	-	193	126458531	-	BURPS1106A_A2489	-	hypothetical protein
2478	 68.61	0	2453979..2455316	-	445	126456230	-	BURPS1106A_A2490	-	hypothetical protein
2479	 63.59	0	2455428..2455850	-	140	126456329	-	BURPS1106A_A2491	-	putative rubrerythrin
2480	 68.50	0	2456121..2457155	-	344	126458017	-	BURPS1106A_A2492	-	putative N-acetylmuramoyl-L-alanine amidase
2481	 62.10	0	2457286..2457504	+	72	126455728	-	BURPS1106A_A2493	-	hypothetical protein
2482	 72.66	0	2457699..2458967	-	422	126456650	-	BURPS1106A_A2494	-	sigma-70 family RNA polymerase sigma factor
2483	 72.22	0	2458964..2459503	-	179	126455843	-	BURPS1106A_A2495	-	hypothetical protein
2484	 67.15	0	2459525..2459938	-	137	126456451	-	BURPS1106A_A2496	-	DGPF domain-containing protein
2485	 67.23	0	2460105..2460458	-	117	126457066	-	BURPS1106A_A2497	-	DGPF domain-containing protein
2486	 69.92	0	2460820..2462694	+	624	126455741	-	BURPS1106A_A2498	-	endonuclease/exonuclease/phosphatase family protein
2487	 70.70	0	2462723..2463268	+	181	126456374	-	BURPS1106A_A2499	-	hypothetical protein
2488	 69.46	0	2463436..2463864	+	142	126457087	-	BURPS1106A_A2500	-	hypothetical protein
2489	 68.38	0	2463913..2464497	+	194	126456179	-	BURPS1106A_A2501	-	putative lipoprotein
2490	 74.75	+1	2464535..2464732	+	65	126456175	-	BURPS1106A_A2502	-	hypothetical protein
2491	 64.02	0	2464725..2465783	+	352	126456863	-	BURPS1106A_A2503	-	hypothetical protein
2492	 65.27	0	2465999..2466427	-	142	126457584	-	BURPS1106A_A2504	-	hypothetical protein
2493	 71.39	0	2466600..2468696	-	698	126456623	-	BURPS1106A_A2505	-	TonB-dependent receptor
2494	 59.22	-1	2468685..2468993	+	102	126458417	-	BURPS1106A_A2506	-	hypothetical protein
2495	 74.46	+1	2469163..2470368	+	401	126457528	-	BURPS1106A_A2507	-	major facilitator transporter
2496	 70.11	0	2471054..2472070	-	338	126456818	-	BURPS1106A_A2509	-	zinc-binding dehydrogenase family oxidoreductase
2497	 73.55	0	2472076..2472351	-	91	126455555	-	BURPS1106A_A2510	-	oxidoreductase, zinc-binding dehydrogenase family protein
2498	 70.65	0	2472418..2473221	-	267	126458615	-	BURPS1106A_A2511	-	short chain dehydrogenase
2499	 71.32	0	2473238..2473366	+	42	126456043	-	BURPS1106A_A2512	-	hypothetical protein
2500	 67.96	0	2473455..2474225	-	256	126458313	-	BURPS1106A_A2513	-	short chain dehydrogenase
2501	 76.38	+1	2474259..2474948	-	229	126457134	-	BURPS1106A_A2514	-	phosphoglycerate mutase family protein
2502	 70.66	0	2474945..2476021	-	358	126456933	-	BURPS1106A_A2515	-	phosphotransferase enzyme family protein
2503	 71.78	0	2476018..2477250	-	410	126457272	-	BURPS1106A_A2516	-	acyl-CoA dehydrogenase domain-containing protein
2504	 72.06	0	2477656..2478582	+	308	126458336	-	BURPS1106A_A2517	-	transcriptional regulator
2505	 70.65	0	2478674..2479075	+	133	126455506	-	BURPS1106A_A2518	-	hypothetical protein
2506	 68.50	0	2479213..2480415	-	400	126456635	-	BURPS1106A_A2519	-	hypothetical protein
2507	 46.67	-2	2480384..2480503	+	39	126456915	-	BURPS1106A_A2520	-	hypothetical protein
2508	 63.74	0	2480626..2481138	+	170	126458035	-	BURPS1106A_A2521	-	hypothetical protein
2509	 69.27	0	2481325..2482206	-	293	126456328	-	BURPS1106A_A2522	-	dyp-type peroxidase family protein
2510	 67.71	0	2482329..2482805	+	158	126457753	-	BURPS1106A_A2523	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.