IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2260	 70.29	0	2253552..2254103	-	183	126456262	-	BURPS1106A_A2270	-	acetyltransferase
2261	 69.35	0	2254102..2254362	+	86	126458136	-	BURPS1106A_A2271	-	hypothetical protein
2262	 67.86	0	2254623..2254790	-	55	126456068	-	BURPS1106A_A2272	-	hypothetical protein
2263	 69.88	0	2255055..2256266	-	403	126456982	-	BURPS1106A_A2273	-	succinylglutamate desuccinylase/aspartoacylase family protein
2264	 78.32	+1	2256265..2256633	+	122	126457987	-	BURPS1106A_A2274	-	hypothetical protein
2265	 64.53	0	2256873..2257106	+	77	126456107	-	BURPS1106A_A2275	-	hypothetical protein
2266	 69.81	0	2257366..2258289	+	307	126456974	-	BURPS1106A_A2276	-	putative ribonuclease BN
2267	 65.71	0	2258748..2259902	+	384	126457511	-	BURPS1106A_A2277	-	outer membrane porin
2268	 68.12	0	2260040..2260177	+	45	126458412	-	BURPS1106A_A2278	-	hypothetical protein
2269	 67.25	0	2260630..2260971	-	113	126456213	-	BURPS1106A_A2279	-	hypothetical protein
2270	 66.27	0	2261048..2261302	+	84	126456959	-	BURPS1106A_A2280	-	hypothetical protein
2271	 65.96	0	2261728..2262150	-	140	126457545	bph2	BURPS1106A_A2281	-	putative histone H1
2272	 66.96	0	2262188..2263573	+	461	126458413	-	BURPS1106A_A2282	-	putative acyltransferase
2273	 64.86	0	2264125..2265012	-	295	126456586	galU	BURPS1106A_A2283	-	UTP-glucose-1-phosphate uridylyltransferase
2274	 65.33	0	2265028..2265177	+	49	126456934	-	BURPS1106A_A2284	-	hypothetical protein
2275	 59.03	-1	2265288..2265431	-	47	126458068	-	BURPS1106A_A2285	-	hypothetical protein
2276	 42.28	-2	2265420..2265542	+	40	126456042	-	BURPS1106A_A2286	-	hypothetical protein
2277	 67.00	0	2265617..2266822	+	401	126456287	-	BURPS1106A_A2287	-	putative acyltransferase
2278	 70.56	0	2266936..2269398	-	820	126457354	-	BURPS1106A_A2288	-	glycosyl transferase group 1 family protein
2279	 68.25	0	2269395..2270849	-	484	126455658	-	BURPS1106A_A2289	-	polysaccharide biosynthesis protein
2280	 70.56	0	2270910..2273066	-	718	126456302	-	BURPS1106A_A2290	-	hypothetical protein
2281	 43.86	-2	2273209..2273322	-	37	126457025	-	BURPS1106A_A2291	-	hypothetical protein
2282	 48.55	-2	2273456..2273593	+	45	126457811	-	BURPS1106A_A2293	-	acyltransferase 3
2283	 67.38	0	2273557..2273697	-	46	126457751	-	BURPS1106A_A2292	-	hypothetical protein
2284	 70.16	0	2273651..2274709	+	352	126458565	-	BURPS1106A_A2294	-	putative acyltransferase
2285	 65.33	0	2274745..2275788	+	347	126456667	gmd	BURPS1106A_A2295	-	GDP-mannose 4,6-dehydratase
2286	 71.93	0	2275775..2276743	+	322	126458537	-	BURPS1106A_A2297	-	NAD-dependent epimerase/dehydratase family protein
2287	 63.25	0	2276728..2277108	-	126	126456608	-	BURPS1106A_A2296	-	cupin domain-containing protein
2288	 72.22	0	2277057..2277416	-	119	126457702	-	BURPS1106A_A2298	-	hypothetical protein
2289	 67.06	0	2277461..2278732	-	423	126456415	metZ	BURPS1106A_A2299	-	O-succinylhomoserine sulfhydrylase
2290	 65.69	0	2278907..2280442	-	511	126455530	purF	BURPS1106A_A2300	-	amidophosphoribosyltransferase
2291	 67.07	0	2280495..2280989	-	164	126458235	-	BURPS1106A_A2301	-	CvpA family protein
2292	 74.10	+1	2280996..2281721	-	241	126457292	-	BURPS1106A_A2302	-	sporulation and cell division repeat-containing protein
2293	 67.84	0	2281841..2283208	-	455	126456914	folC	BURPS1106A_A2303	-	FolC bifunctional protein
2294	 66.21	0	2283266..2284138	-	290	126456033	accD	BURPS1106A_A2304	-	acetyl-CoA carboxylase subunit beta
2295	 70.47	0	2284218..2285033	-	271	126457657	trpA	BURPS1106A_A2305	-	tryptophan synthase subunit alpha
2296	 66.55	0	2285078..2285926	-	282	126458257	rsrIM	BURPS1106A_A2306	-	DNA modification methylase RsrI
2297	 66.83	0	2285936..2287129	-	397	126458101	trpB	BURPS1106A_A2307	-	tryptophan synthase subunit beta
2298	 71.10	0	2287201..2287989	-	262	126455630	hscA	BURPS1106A_A2308	-	N-(5'-phosphoribosyl)anthranilate isomerase
2299	 68.14	0	2287962..2288774	-	270	126456028	truA	BURPS1106A_A2309	-	tRNA pseudouridine synthase A
2300	 76.80	+1	2288774..2291419	-	881	126458326	-	BURPS1106A_A2310	-	hypothetical protein
2301	 65.51	0	2291555..2292676	-	373	126456576	asd	BURPS1106A_A2311	-	aspartate-semialdehyde dehydrogenase
2302	 61.73	-1	2292675..2292836	+	53	126456034	-	BURPS1106A_A2312	-	hypothetical protein
2303	 67.60	0	2293018..2294085	-	355	126455689	leuB	BURPS1106A_A2313	-	3-isopropylmalate dehydrogenase
2304	 63.59	0	2294134..2294784	-	216	126457106	leuD	BURPS1106A_A2314	-	isopropylmalate isomerase small subunit
2305	 74.67	+1	2294862..2295011	-	49	126455539	-	BURPS1106A_A2315	-	hypothetical protein
2306	 67.59	0	2295008..2296417	-	469	126456163	leuC	BURPS1106A_A2316	-	isopropylmalate isomerase large subunit
2307	 75.00	+1	2296580..2296735	+	51	126458532	-	BURPS1106A_A2317	-	hypothetical protein
2308	 67.28	0	2296809..2298104	-	431	126457618	ssuD	BURPS1106A_A2318	-	nitrilotriacetate monooxygenase component A
2309	 69.41	0	2298097..2299044	-	315	126457956	-	BURPS1106A_A2319	-	hypothetical protein
2310	 56.10	-1	2299045..2299167	-	40	126455637	-	BURPS1106A_A2320	-	hypothetical protein
2311	 68.15	0	2299146..2299280	-	44	126456532	-	BURPS1106A_A2321	-	hypothetical protein
2312	 76.07	+1	2299535..2299768	-	77	126458246	-	BURPS1106A_A2322	-	hypothetical protein
2313	 62.73	0	2299765..2300373	-	202	126455873	-	BURPS1106A_A2323	-	AsnC family transcriptional regulator
2314	 70.19	0	2300453..2303176	+	907	126455853	-	BURPS1106A_A2324	-	2-oxoacid dehydrogenase subunit E1
2315	 71.65	0	2303428..2304672	-	414	126456390	-	BURPS1106A_A2325	-	hypothetical protein
2316	 76.14	+1	2304986..2305249	-	87	126457293	-	BURPS1106A_A2326	-	hypothetical protein
2317	 69.49	0	2305530..2305919	-	129	126456130	-	BURPS1106A_A2327	-	hypothetical protein
2318	 73.54	0	2305995..2306969	+	324	126457027	-	BURPS1106A_A2328	-	AraC family transcriptional regulator
2319	 62.60	0	2307066..2308367	-	433	126457508	gltA	BURPS1106A_A2329	-	type II citrate synthase
2320	 64.10	0	2308420..2308692	-	90	126458444	-	BURPS1106A_A2330	-	TPR repeat-containing protein
2321	 63.39	0	2308694..2309395	-	233	126455690	sdhB	BURPS1106A_A2331	-	succinate dehydrogenase iron-sulfur subunit
2322	 66.10	0	2309417..2311192	-	591	126456585	sdhA	BURPS1106A_A2332	-	succinate dehydrogenase flavoprotein subunit
2323	 61.79	-1	2311197..2311565	-	122	126458135	sdhD	BURPS1106A_A2333	-	succinate dehydrogenase, hydrophobic membrane anchor subunit
2324	 58.27	-1	2311570..2311986	-	138	126456729	sdhC	BURPS1106A_A2334	-	succinate dehydrogenase, cytochrome b556 subunit
2325	 68.04	0	2312186..2312986	-	266	126455987	-	BURPS1106A_A2335	-	GntR family transcriptional regulator
2326	 66.87	0	2313285..2314268	+	327	126458088	-	BURPS1106A_A2336	-	malate dehydrogenase
2327	 73.43	0	2314466..2315485	+	339	126457117	-	BURPS1106A_A2337	-	putative lyase
2328	 67.84	0	2315642..2316151	+	169	126458500	-	BURPS1106A_A2338	-	hypothetical protein
2329	 67.98	0	2316228..2317679	+	483	126457788	prpD	BURPS1106A_A2339	-	2-methylcitrate dehydratase
2330	 64.68	0	2317727..2320444	+	905	126456668	acnA	BURPS1106A_A2340	-	aconitate hydratase
2331	 68.29	0	2320691..2323396	-	901	126455972	-	BURPS1106A_A2341	-	hemagglutinin-like protein
2332	 55.56	-2	2323371..2323532	+	53	126457774	-	BURPS1106A_A2343	-	hypothetical protein
2333	 64.10	0	2323518..2325194	-	558	126455760	-	BURPS1106A_A2342	-	HlyB family hemolysin activator protein
2334	 68.86	0	2325206..2325478	-	90	126457924	-	BURPS1106A_A2344	-	transposase, truncated
2335	 61.40	-1	2325507..2325620	-	37	126457184	-	BURPS1106A_A2345	-	hypothetical protein
2336	 66.99	0	2325924..2326229	+	101	126456874	-	BURPS1106A_A2346	-	hypothetical protein
2337	 72.12	0	2326325..2326489	-	54	126456178	-	BURPS1106A_A2347	-	hypothetical protein
2338	 69.26	0	2326486..2328570	-	694	126458258	-	BURPS1106A_A2348	-	cytochrome c family protein
2339	 72.65	0	2328837..2328953	-	38	126457604	-	BURPS1106A_A2349	-	hypothetical protein
2340	 70.16	0	2329048..2329419	-	123	126455711	-	BURPS1106A_A2350	-	hypothetical protein
2341	 72.38	0	2329416..2329730	-	104	126458185	-	BURPS1106A_A2351	-	hypothetical protein
2342	 63.43	0	2329733..2331340	-	535	126455512	-	BURPS1106A_A2352	-	putative tyrosinase
2343	 68.59	0	2331352..2331663	-	103	126458016	-	BURPS1106A_A2353	-	hypothetical protein
2344	 72.68	0	2331650..2332264	-	204	126456555	-	BURPS1106A_A2354	-	putative lipoprotein
2345	 60.68	-1	2332263..2332379	+	38	126455782	-	BURPS1106A_A2355	-	hypothetical protein
2346	 62.70	0	2332617..2332742	+	41	126457936	-	BURPS1106A_A2356	-	hypothetical protein
2347	 64.44	0	2333274..2333408	+	44	126457166	-	BURPS1106A_A2357	-	hypothetical protein
2348	 65.54	0	2333815..2335503	+	562	126456903	-	BURPS1106A_A2358	-	sedolisin
2349	 66.67	0	2335598..2336467	-	289	126456227	-	BURPS1106A_A2359	-	putative polyamine ABC transporter, permease protein
2350	 67.46	0	2336468..2337727	-	419	126458317	-	BURPS1106A_A2360	-	putative polyamine ABC transporter, permease protein
2351	 67.41	0	2337678..2337812	-	44	126457645	-	BURPS1106A_A2361	-	hypothetical protein
2352	 64.89	0	2337828..2338952	-	374	126455596	-	BURPS1106A_A2362	-	putative polyamine ABC transporter, periplasmic polyamine-binding protein
2353	 66.12	0	2338949..2340049	-	366	126456265	-	BURPS1106A_A2363	-	polyamine ABC transporter, ATP-binding protein
2354	 69.17	0	2340167..2341687	+	506	126455967	-	BURPS1106A_A2364	-	GntR family transcriptional regulator
2355	 72.27	0	2341794..2342828	-	344	126458474	lifO	BURPS1106A_A2365	-	lipase chaperone
2356	 67.04	0	2342832..2343914	-	360	126456554	-	BURPS1106A_A2366	-	lipase
2357	 58.54	-1	2343957..2344079	+	40	126455857	-	BURPS1106A_A2367	-	hypothetical protein
2358	 69.11	0	2344250..2346499	-	749	126457948	-	BURPS1106A_A2368	-	TonB-dependent copper receptor
2359	 73.74	0	2346587..2346982	-	131	126457158	-	BURPS1106A_A2369	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.