IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2099	 66.59	0	2066355..2067674	+	439	126456142	-	BURPS1106A_A2109	-	MFS transporter, metabolite:H+ symporter (MHS) family protein
2100	 67.27	0	2067719..2067883	+	54	126457962	-	BURPS1106A_A2110	-	hypothetical protein
2101	 69.82	0	2068036..2068923	-	295	126457505	-	BURPS1106A_A2111	-	LysR family transcriptional regulator
2102	 69.27	0	2068904..2070247	+	447	126456971	-	BURPS1106A_A2112	-	FMN-dependent family dehydrogenase
2103	 66.19	0	2070371..2072035	-	554	126457803	-	BURPS1106A_A2113	-	serine carboxypeptidase family protein
2104	 74.17	+1	2072079..2072198	-	39	126457674	-	BURPS1106A_A2114	-	hypothetical protein
2105	 76.88	+1	2072203..2072760	-	185	126458195	-	BURPS1106A_A2115	-	hypothetical protein
2106	 71.95	0	2072783..2074372	-	529	126457317	-	BURPS1106A_A2116	-	kumamolisin
2107	 72.89	0	2074803..2075429	-	208	126456348	-	BURPS1106A_A2117	-	LysE family protein
2108	 66.88	0	2075563..2076027	+	154	126455643	-	BURPS1106A_A2118	-	AsnC family transcriptional regulator
2109	 72.10	0	2076362..2076766	+	134	126456091	-	BURPS1106A_A2119	-	hypothetical protein
2110	 72.62	0	2076782..2077033	+	83	126458029	-	BURPS1106A_A2120	-	hypothetical protein
2111	 69.50	0	2077142..2078728	+	528	126457500	-	BURPS1106A_A2121	-	phosphate transporter family protein
2112	 69.73	0	2078878..2079660	+	260	126457023	-	BURPS1106A_A2122	-	hypothetical protein
2113	 68.01	0	2079657..2080178	+	173	126458367	-	BURPS1106A_A2123	-	hypothetical protein
2114	 69.96	0	2080243..2081850	+	535	126455926	-	BURPS1106A_A2124	-	AMP-binding domain-containing protein
2115	 66.09	0	2081950..2082123	+	57	126456049	-	BURPS1106A_A2125	-	hypothetical protein
2116	 48.96	-2	2082175..2082366	-	63	126456918	-	BURPS1106A_A2126	-	hypothetical protein
2117	 42.48	-2	2082367..2082519	+	50	126457828	-	BURPS1106A_A2127	-	hypothetical protein
2118	 64.94	0	2082618..2083310	+	230	126457976	bmpR	BURPS1106A_A2128	-	autoinducer-binding transcriptional regulator BmpR
2119	 69.95	0	2083633..2084241	+	202	126456405	bpmI	BURPS1106A_A2129	-	autoinducer synthetase BpmI
2120	 67.31	0	2084214..2084369	+	51	126457260	-	BURPS1106A_A2130	-	hypothetical protein
2121	 68.33	0	2084583..2085908	+	441	126458159	-	BURPS1106A_A2131	-	oxidoreductase, FAD/FMN-binding
2122	 62.28	0	2086060..2086173	-	37	126458293	-	BURPS1106A_A2132	-	hypothetical protein
2123	 71.48	0	2086254..2087105	-	283	126458607	tauC	BURPS1106A_A2133	-	taurine ABC transporter, permease protein
2124	 70.24	0	2087108..2087890	-	260	126456823	tauB	BURPS1106A_A2134	-	taurine ABC transporter, ATP-binding protein
2125	 70.13	0	2087911..2088921	-	336	126457537	tauA	BURPS1106A_A2135	-	taurine ABC transporter, periplasmic taurine-binding protein
2126	 58.65	-1	2088920..2089156	+	78	126455837	-	BURPS1106A_A2136	-	hypothetical protein
2127	 68.82	0	2089224..2090057	+	277	126456525	tauD	BURPS1106A_A2137	-	taurine dioxygenase
2128	 71.43	0	2090298..2090486	-	62	126457382	-	BURPS1106A_A2138	-	hypothetical protein
2129	 69.49	0	2090483..2092039	-	518	126457868	-	BURPS1106A_A2139	-	hypothetical protein
2130	 71.30	0	2092073..2094619	-	848	126456135	celA	BURPS1106A_A2140	-	cellulose synthase, catalytic subunit (UDP-forming)
2131	 75.69	+1	2094616..2095479	-	287	126457032	-	BURPS1106A_A2141	-	hypothetical protein
2132	 72.30	0	2095476..2095688	-	70	126457806	-	BURPS1106A_A2142	-	hypothetical protein
2133	 76.18	+1	2095685..2097943	-	752	126458419	-	BURPS1106A_A2143	-	hypothetical protein
2134	 76.15	+1	2097954..2102678	-	1574	126457527	-	BURPS1106A_A2144	-	putative cellulose synthase operon protein C
2135	 76.58	+1	2102657..2104219	-	520	126455862	-	BURPS1106A_A2145	-	endo-1,4-D-glucanase
2136	 72.47	0	2104224..2106671	-	815	126456989	-	BURPS1106A_A2146	-	cellulose synthase regulator protein
2137	 63.69	0	2106684..2106851	+	55	126457082	-	BURPS1106A_A2147	-	hypothetical protein
2138	 73.24	0	2106892..2107104	+	70	126458434	-	BURPS1106A_A2148	-	hypothetical protein
2139	 65.15	0	2107086..2107349	+	87	126456134	-	BURPS1106A_A2149	-	hypothetical protein
2140	 69.57	0	2107428..2107565	-	45	126457394	-	BURPS1106A_A2150	-	hypothetical protein
2141	 73.48	0	2107687..2108097	+	136	126457499	-	BURPS1106A_A2151	-	putative transcriptionl regulator HipB
2142	 72.14	0	2108094..2109446	+	450	126455544	-	BURPS1106A_A2152	-	putative regulatory protein HipA
2143	 69.98	0	2109603..2110055	-	150	126456423	-	BURPS1106A_A2153	-	hypothetical protein
2144	 65.99	0	2110156..2110302	-	48	126457989	-	BURPS1106A_A2154	-	hypothetical protein
2145	 70.60	0	2110479..2111393	-	304	126457088	-	BURPS1106A_A2155	-	LysR family transcriptional regulator
2146	 71.38	0	2111560..2112513	+	317	126455740	speB	BURPS1106A_A2157	-	agmatinase
2147	 73.47	0	2112468..2112908	-	146	126456627	-	BURPS1106A_A2156	-	hypothetical protein
2148	 68.52	0	2112907..2113122	+	71	126457261	-	BURPS1106A_A2158	-	hypothetical protein
2149	 68.24	0	2113119..2114519	+	466	126457555	-	BURPS1106A_A2159	-	hypothetical protein
2150	 75.33	+1	2114535..2114834	+	99	126456663	-	BURPS1106A_A2160	-	hypothetical protein
2151	 64.04	0	2115580..2115921	-	113	126456156	-	BURPS1106A_A2161	-	hypothetical protein
2152	 68.66	0	2116001..2116801	+	266	126457823	-	BURPS1106A_A2162	-	hypothetical protein
2153	 72.15	0	2116795..2117286	+	163	126456912	-	BURPS1106A_A2163	-	hypothetical protein
2154	 70.17	0	2117437..2118321	+	294	126455600	-	BURPS1106A_A2164	-	hypothetical protein
2155	 69.06	0	2118389..2120188	-	599	126457187	-	BURPS1106A_A2165	-	YscC/HrcC family type III secretion outer membrane protein
2156	 69.40	0	2120305..2121987	-	560	126458207	-	BURPS1106A_A2166	-	putative type IV pilus protein
2157	 76.46	+1	2121987..2122466	-	159	126455726	-	BURPS1106A_A2167	-	putative type IV pilus protein
2158	 64.47	0	2122506..2123096	-	196	126456000	-	BURPS1106A_A2168	-	putative type IV pilus protein
2159	 69.17	0	2123093..2124169	-	358	126457659	-	BURPS1106A_A2169	-	type IV pilus biogenesis protein
2160	 71.26	0	2124159..2125769	-	536	126458355	-	BURPS1106A_A2170	-	type IV pilus protein PilQ
2161	 76.85	+1	2125766..2126266	-	166	126456196	-	BURPS1106A_A2171	-	putative type IV pilus biogenesis protein PilP
2162	 71.98	0	2126280..2127578	-	432	126456277	-	BURPS1106A_A2172	-	putative type IV pilus biogenesis protein
2163	 71.63	0	2127590..2129362	-	590	126457943	-	BURPS1106A_A2173	-	type IVB pilus formation outer membrane protein
2164	 74.04	0	2129362..2129931	-	189	126457488	-	BURPS1106A_A2174	-	PilL domain-containing protein
2165	 48.25	-2	2130114..2130227	-	37	126457110	-	BURPS1106A_A2175	-	hypothetical protein
2166	 66.49	0	2130248..2131354	+	368	126456645	pilT	BURPS1106A_A2176	-	twitching motility protein PilT
2167	 78.95	+1	2131597..2133387	-	596	126457995	-	BURPS1106A_A2177	-	type II/III secretion system family protein
2168	 68.31	0	2133384..2134175	-	263	126457148	-	BURPS1106A_A2178	-	DNA-binding response regulator
2169	 73.06	0	2134184..2135263	-	359	126457002	-	BURPS1106A_A2179	-	putative sensor histidine kinase
2170	 64.10	0	2135397..2136020	-	207	126456103	-	BURPS1106A_A2180	-	hypothetical protein
2171	 80.95	+2	2136044..2136211	-	55	126457798	-	BURPS1106A_A2181	-	hypothetical protein
2172	 70.55	0	2136250..2136738	+	162	126456871	-	BURPS1106A_A2182	-	putative hrp protein
2173	 73.67	0	2136966..2137265	-	99	126456377	-	BURPS1106A_A2183	-	hypothetical protein
2174	 70.46	0	2137262..2138026	-	254	126457070	-	BURPS1106A_A2184	-	hypothetical protein
2175	 70.99	0	2138133..2138780	+	215	126458454	-	BURPS1106A_A2185	-	hypothetical protein
2176	 68.82	0	2138788..2138973	+	61	126455759	-	BURPS1106A_A2186	-	hypothetical protein
2177	 74.28	+1	2139007..2139282	-	91	126456872	-	BURPS1106A_A2187	-	hypothetical protein
2178	 72.96	0	2139336..2140781	-	481	126457775	-	BURPS1106A_A2188	-	regulatory protein HrpB
2179	 62.50	0	2140993..2141448	-	151	126455588	-	BURPS1106A_A2189	-	hypothetical protein
2180	 60.11	-1	2141541..2141723	-	60	126456459	-	BURPS1106A_A2190	-	hypothetical protein
2181	 73.81	0	2141893..2142144	-	83	126456999	-	BURPS1106A_A2191	-	hypothetical protein
2182	 74.80	+1	2142172..2143155	-	327	126457869	-	BURPS1106A_A2192	-	putative type III secretion apparatus protein
2183	 76.21	+1	2143351..2144220	-	289	126456104	-	BURPS1106A_A2193	-	hypothetical protein
2184	 66.29	0	2144217..2144480	-	87	126456673	-	BURPS1106A_A2194	-	HrpO family type III secretion protein
2185	 64.67	0	2144521..2145171	-	216	126457083	yscR	BURPS1106A_A2195	-	type III secretion system protein
2186	 76.35	+1	2145158..2146468	-	436	126458111	-	BURPS1106A_A2196	-	type III secretion system apparatus protein YscQ/HrcQ
2187	 75.98	+1	2146498..2147109	-	203	126456828	-	BURPS1106A_A2197	-	type III secretion protein HpaP
2188	 69.08	0	2147106..2149178	-	690	126456562	-	BURPS1106A_A2198	-	HrcV family type III secretion protein
2189	 70.63	0	2149175..2150437	-	420	126458610	-	BURPS1106A_A2199	-	type III secretion system protein HrcU
2190	 73.02	0	2150493..2151074	+	193	126455911	-	BURPS1106A_A2200	-	HrpB1/HrpK family type III secretion protein
2191	 67.87	0	2151088..2151504	+	138	126456357	-	BURPS1106A_A2201	-	type III secretion protein HrpB2
2192	 72.40	0	2151501..2152355	+	284	126457668	-	BURPS1106A_A2202	-	YscJ/HrcJ family type III secretion apparatus lipoprotein
2193	 77.29	+1	2152352..2153029	+	225	126458104	-	BURPS1106A_A2203	-	type III secretion protein HrpB4
2194	 74.55	+1	2153008..2153730	+	240	126458283	-	BURPS1106A_A2204	-	type III secretion system protein HrpB
2195	 71.86	0	2153727..2155055	+	442	126457565	-	BURPS1106A_A2205	-	type III secretion system ATPase
2196	 77.08	+1	2155052..2155579	+	175	126458279	-	BURPS1106A_A2206	-	type III secretion protein HrpB7
2197	 66.05	0	2155576..2156544	+	322	126455595	-	BURPS1106A_A2208	-	type III secretion protein SpaR/YscT/HrcT
2198	 71.43	0	2156528..2156905	-	125	126458229	-	BURPS1106A_A2207	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.