IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
161	 51.28	-2	151961..152623	-	220	126457628	-	BURPS1106A_A0161	-	LuxR family DNA-binding response regulator
162	 40.74	-2	152735..152896	-	53	126456924	-	BURPS1106A_A0162	-	hypothetical protein
163	 60.59	-1	153172..155541	-	789	126455641	-	BURPS1106A_A0163	-	fimbrial usher family protein
164	 55.51	-2	155917..156615	-	232	126457931	-	BURPS1106A_A0164	-	putative periplasmic chaperone protein
165	 40.17	-2	156831..156947	+	38	126458119	-	BURPS1106A_A0165	-	hypothetical protein
166	 46.67	-2	157021..157140	-	39	126457211	-	BURPS1106A_A0166	-	hypothetical protein
167	 57.99	-1	157986..158642	-	218	126458284	-	BURPS1106A_A0167	-	hypothetical protein
168	 47.62	-2	159564..159689	-	41	126457366	-	BURPS1106A_A0168	-	hypothetical protein
169	 59.16	-1	159650..160342	+	230	126456017	rcsB	BURPS1106A_A0170	-	capsular synthesis regulator component B
170	 68.42	0	160320..160490	-	56	126456890	-	BURPS1106A_A0169	-	hypothetical protein
171	 52.45	-2	160651..161037	-	128	126458148	-	BURPS1106A_A0171	-	H-NS histone family protein
172	 68.78	0	161435..162760	+	441	126457449	-	BURPS1106A_A0172	-	major facilitator family transporter
173	 75.32	+1	162834..164000	+	388	126456174	-	BURPS1106A_A0173	-	glycerate kinase
174	 70.38	0	164163..165617	+	484	126455501	pyk	BURPS1106A_A0174	-	pyruvate kinase
175	 71.57	0	165630..167096	+	488	126457594	-	BURPS1106A_A0175	-	carbohydrate diacid regulator
176	 46.67	-2	167220..167534	-	104	126456869	-	BURPS1106A_A0176	-	hypothetical protein
177	 73.33	0	167670..167789	-	39	126457560	-	BURPS1106A_A0177	-	hypothetical protein
178	 67.62	0	167806..170964	+	1052	126457274	-	BURPS1106A_A0178	-	putative non-ribosomal peptide synthase
179	 71.18	0	171010..171984	+	324	126456181	-	BURPS1106A_A0179	-	NAD-dependent epimerase/dehydratase family protein
180	 68.18	0	172008..172403	+	131	126457692	-	BURPS1106A_A0181	-	putative limonene-1,2-epoxide hydrolase
181	 71.89	0	172393..172641	-	82	126458290	-	BURPS1106A_A0180	-	hypothetical protein
182	 69.01	0	172646..173671	+	341	126456366	-	BURPS1106A_A0182	-	O-methyltransferase
183	 72.06	0	173712..174713	-	333	126455561	-	BURPS1106A_A0183	-	LysR family transcriptional regulator
184	 63.66	0	174741..175139	+	132	126458181	-	BURPS1106A_A0184	-	hypothetical protein
185	 69.47	0	175169..176557	-	462	126457325	-	BURPS1106A_A0185	-	diguanylate cyclase
186	 69.05	0	176746..176871	+	41	126455894	-	BURPS1106A_A0186	-	hypothetical protein
187	 72.16	0	176859..177113	+	84	126457046	-	BURPS1106A_A0187	-	hypothetical protein
188	 60.88	-1	177110..177403	+	97	126456580	-	BURPS1106A_A0188	-	hypothetical protein
189	 65.28	0	177844..178131	+	95	126456810	-	BURPS1106A_A0189	-	hypothetical protein
190	 81.71	+2	178137..178382	+	81	126455819	-	BURPS1106A_A0190	-	hypothetical protein
191	 63.39	0	178430..178612	+	60	126457935	-	BURPS1106A_A0191	-	hypothetical protein
192	 65.43	0	178701..178862	+	53	126457246	-	BURPS1106A_A0192	-	glycine-rich protein
193	 73.39	0	178877..179233	-	118	126457743	-	BURPS1106A_A0193	-	hypothetical protein
194	 68.99	0	179324..180703	+	459	126456993	-	BURPS1106A_A0194	-	mercuric reductase
195	 65.93	0	180836..181783	-	315	126456018	-	BURPS1106A_A0195	-	carbohydrate ABC transporter periplasmic sugar-binding protein
196	 70.24	0	181860..182894	-	344	126458106	-	BURPS1106A_A0196	-	carbohydrate ABC transporter permease
197	 70.91	0	182937..184490	-	517	126457517	-	BURPS1106A_A0197	-	carbohydrate ABC transporter ATP-binding protein
198	 72.18	0	184477..185727	-	416	126458441	-	BURPS1106A_A0198	-	ROK family protein
199	 80.87	+2	186269..186634	-	121	126455878	-	BURPS1106A_A0199	-	hypothetical protein
200	 68.33	0	186631..189279	-	882	126457000	-	BURPS1106A_A0200	-	putative glucan 1,4-alpha-glucosidase
201	 75.60	+1	189540..189953	-	137	126457671	-	BURPS1106A_A0201	-	hypothetical protein
202	 68.96	0	189950..191347	-	465	126458103	-	BURPS1106A_A0202	-	ATP-dependent RNA helicase DbpA
203	 67.71	0	191512..191799	-	95	126455613	-	BURPS1106A_A0203	-	porin domain-containing protein
204	 71.39	0	192045..193358	-	437	126455895	-	BURPS1106A_A0204	-	major facilitator family transporter
205	 69.35	0	193399..194589	-	396	126457421	-	BURPS1106A_A0205	-	amidohydrolase family protein
206	 69.10	0	194768..195670	+	300	126457689	-	BURPS1106A_A0206	-	LysR family transcriptional regulator
207	 74.32	+1	196010..196819	-	269	126456844	-	BURPS1106A_A0207	-	hypothetical protein
208	 75.97	+1	196883..197011	+	42	126457727	-	BURPS1106A_A0208	-	hypothetical protein
209	 68.61	0	197103..198182	+	359	126458620	-	BURPS1106A_A0209	-	fatty acid desaturase family protein
210	 74.80	+1	198239..198361	+	40	126455513	-	BURPS1106A_A0210	-	hypothetical protein
211	 68.03	0	198379..198525	+	48	126457696	-	BURPS1106A_A0211	-	hypothetical protein
212	 75.74	+1	198674..199114	+	146	126457909	-	BURPS1106A_A0213	-	hypothetical protein
213	 68.38	0	199102..199686	-	194	126457299	-	BURPS1106A_A0212	-	hypothetical protein
214	 63.56	0	199733..200632	-	299	126456775	-	BURPS1106A_A0214	-	solute-binding family 1 protein
215	 72.28	0	200795..202042	-	415	126457265	-	BURPS1106A_A0215	-	putative D-amino acid dehydrogenase 2, small subunit
216	 58.12	-1	202058..202174	+	38	126458574	-	BURPS1106A_A0216	-	hypothetical protein
217	 70.63	0	202195..203127	-	310	126456083	-	BURPS1106A_A0217	-	LysR family transcriptional regulator
218	 70.98	0	203167..203676	-	169	126455563	-	BURPS1106A_A0218	-	hypothetical protein
219	 71.66	0	203673..204413	-	246	126456293	-	BURPS1106A_A0219	-	short chain dehydrogenase
220	 64.26	0	204427..204717	+	96	126455731	-	BURPS1106A_A0221	-	hypothetical protein
221	 58.33	-1	204714..204833	-	39	126458018	-	BURPS1106A_A0220	-	hypothetical protein
222	 62.02	0	204857..205222	+	121	126456637	-	BURPS1106A_A0222	-	hypothetical protein
223	 55.78	-1	205311..205457	+	48	126457487	-	BURPS1106A_A0223	-	hypothetical protein
224	 65.27	0	205454..207595	+	713	126456001	-	BURPS1106A_A0224	-	hypothetical protein
225	 56.97	-1	207592..207756	+	54	126456777	-	BURPS1106A_A0225	-	hypothetical protein
226	 68.49	0	207806..210766	+	986	126457698	-	BURPS1106A_A0226	-	putative alpha-1,2-mannosidase
227	 57.71	-1	210832..211110	-	92	126457849	-	BURPS1106A_A0227	-	hypothetical protein
228	 67.71	0	211366..212424	+	352	126456717	pvcA	BURPS1106A_A0228	-	pyoverdine chromophore biosynthetic protein PvcA
229	 69.84	0	212421..213335	+	304	126455993	pvcB	BURPS1106A_A0229	-	pyoverdine biosynthesis protein PvcB
230	 67.07	0	213361..214845	+	494	126456550	pvcC	BURPS1106A_A0230	-	chromophore biosynthetic protein PvcC
231	 69.45	0	214891..216759	+	622	126455483	asnB	BURPS1106A_A0231	-	asparagine synthase (glutamine-hydrolyzing)
232	 72.94	0	216788..217759	+	323	126458559	-	BURPS1106A_A0232	-	zinc-binding dehydrogenase family oxidoreductase
233	 70.98	0	217814..218740	+	308	126457734	-	BURPS1106A_A0233	-	aromatic ring-opening dioxygenase
234	 67.78	0	218984..220330	-	448	126457796	-	BURPS1106A_A0234	-	LysR family transcriptional regulator
235	 71.79	0	220915..221148	-	77	126456829	-	BURPS1106A_A0235	-	hypothetical protein
236	 71.52	0	221168..225244	-	1358	126455953	-	BURPS1106A_A0236	-	ImcF/SciS family protein
237	 71.33	0	225273..226538	-	421	126457554	-	BURPS1106A_A0237	-	hypothetical protein
238	 68.97	0	226627..227973	-	448	126457249	-	BURPS1106A_A0238	-	hypothetical protein
239	 71.23	0	227995..228498	-	167	126456114	sciN	BURPS1106A_A0239	-	SciN protein
240	 78.63	+1	228511..228627	+	38	126457243	-	BURPS1106A_A0241	-	hypothetical protein
241	 62.96	0	228605..229090	-	161	126457863	sciM	BURPS1106A_A0240	-	SciM protein
242	 64.67	0	229207..230706	-	499	126456800	-	BURPS1106A_A0242	-	hypothetical protein
243	 68.04	0	230741..231322	-	193	126455789	-	BURPS1106A_A0243	-	hypothetical protein
244	 71.90	0	231358..234297	-	979	126456099	clpB	BURPS1106A_A0244	-	chaperone clpB
245	 74.41	+1	234829..235551	+	240	126458617	-	BURPS1106A_A0245	-	hypothetical protein
246	 75.57	+1	235548..236513	+	321	126458224	-	BURPS1106A_A0246	-	ImpE/SciE family protein
247	 68.90	0	236500..237081	+	193	126457375	-	BURPS1106A_A0247	-	hypothetical protein
248	 69.37	0	237112..239001	+	629	126456248	-	BURPS1106A_A0248	-	hypothetical protein
249	 71.45	0	239001..240086	+	361	126455565	-	BURPS1106A_A0249	-	hypothetical protein
250	 73.71	0	240149..241198	+	349	126457491	-	BURPS1106A_A0250	-	ImpA-related N-terminal family protein
251	 67.40	0	241270..243597	+	775	126458536	-	BURPS1106A_A0251	-	Rhs element Vgr protein
252	 69.65	0	243629..246106	+	825	126455703	-	BURPS1106A_A0252	-	pentapeptide repeat-containing protein
253	 67.31	0	246103..247185	+	360	126456567	-	BURPS1106A_A0253	-	pentapeptide repeat-containing protein
254	 64.06	0	247179..247370	+	63	126455784	-	BURPS1106A_A0254	-	hypothetical protein
255	 68.03	0	247367..248026	+	219	126456517	-	BURPS1106A_A0255	-	hypothetical protein
256	 65.09	0	248067..248447	+	126	126457174	-	BURPS1106A_A0256	-	hypothetical protein
257	 67.80	0	248514..248690	+	58	126455815	-	BURPS1106A_A0257	-	hypothetical protein
258	 66.46	0	249187..251103	-	638	126457552	-	BURPS1106A_A0258	-	hypothetical protein
259	 63.22	0	251086..251346	+	86	126458277	-	BURPS1106A_A0259	-	hypothetical protein
260	 70.81	0	251443..252336	-	297	126455777	-	BURPS1106A_A0260	-	LysR family transcriptional regulator
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.