IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1679	 75.33	+1	1655610..1657028	-	472	126457469	-	BURPS1106A_A1688	-	CAIB/BAIF family CoA transferase
1680	 62.25	0	1657185..1657433	+	82	126458392	-	BURPS1106A_A1689	-	hypothetical protein
1681	 73.21	0	1657448..1657615	-	55	126458047	-	BURPS1106A_A1690	-	putative oxidoreductase
1682	 73.87	0	1657768..1658142	+	124	126456409	-	BURPS1106A_A1692	-	hypothetical protein
1683	 69.85	0	1658139..1659176	-	345	126455791	-	BURPS1106A_A1691	-	zinc-binding dehydrogenase family oxidoreductase
1684	 70.36	0	1659241..1660863	-	540	126457198	-	BURPS1106A_A1693	-	alcohol dehydrogenase, iron-containing
1685	 69.14	0	1660827..1660988	-	53	126457437	-	BURPS1106A_A1694	-	hypothetical protein
1686	 68.71	0	1661379..1661525	-	48	126458289	-	BURPS1106A_A1695	-	hypothetical protein
1687	 73.48	0	1661565..1661843	+	92	126456968	-	BURPS1106A_A1697	-	hypothetical protein
1688	 50.88	-2	1661840..1661953	-	37	126456097	-	BURPS1106A_A1696	-	hypothetical protein
1689	 69.28	0	1662067..1664130	+	687	126457953	-	BURPS1106A_A1698	-	hypothetical protein
1690	 70.27	0	1664393..1664725	-	110	126455687	-	BURPS1106A_A1699	-	hypothetical protein
1691	 72.70	0	1664800..1665777	+	325	126456614	-	BURPS1106A_A1700	-	hypothetical protein
1692	 69.61	0	1665788..1668604	+	938	126457515	-	BURPS1106A_A1701	-	hypothetical protein
1693	 68.52	0	1668601..1669248	+	215	126458362	-	BURPS1106A_A1702	-	hypothetical protein
1694	 71.81	0	1669241..1670056	+	271	126456077	-	BURPS1106A_A1703	-	hypothetical protein
1695	 79.56	+1	1670150..1670374	+	74	126456577	-	BURPS1106A_A1705	-	hypothetical protein
1696	 72.95	0	1670341..1673589	-	1082	126456228	-	BURPS1106A_A1704	-	non-ribosomal peptide synthase
1697	 72.87	0	1673553..1673681	-	42	126457056	-	BURPS1106A_A1706	-	hypothetical protein
1698	 70.05	0	1673636..1673842	-	68	126455757	mbtH	BURPS1106A_A1707	-	MbtH protein
1699	 73.57	0	1673861..1675150	-	429	126456633	-	BURPS1106A_A1708	-	multidrug resistance protein
1700	 72.39	0	1675155..1687952	-	4265	126456950	-	BURPS1106A_A1709	-	non-ribosomal peptide synthase
1701	 64.64	0	1688002..1688889	-	295	126457484	-	BURPS1106A_A1710	-	hypothetical protein
1702	 67.35	0	1689307..1689597	-	96	126455531	-	BURPS1106A_A1711	-	phosphopantetheine attachment site domain-containing protein
1703	 72.85	0	1689608..1691401	-	597	126457986	-	BURPS1106A_A1712	-	acyl-CoA dehydrogenase domain-containing protein
1704	 70.02	0	1691398..1693158	-	586	126456941	-	BURPS1106A_A1713	-	acyl-CoA dehydrogenase domain-containing protein
1705	 69.29	0	1693155..1694987	-	610	126458087	-	BURPS1106A_A1714	-	AMP-binding domain-containing protein
1706	 50.29	-2	1694973..1695143	+	56	126458509	-	BURPS1106A_A1715	-	hypothetical protein
1707	 62.34	0	1695324..1695554	+	76	126457481	-	BURPS1106A_A1716	-	hypothetical protein
1708	 65.82	0	1695638..1696108	+	156	126456084	-	BURPS1106A_A1718	-	ECF subfamily RNA polymerase sigma factor
1709	 64.52	0	1695641..1695826	-	61	126456303	-	BURPS1106A_A1717	-	hypothetical protein
1710	 67.62	0	1696209..1696523	+	104	126458137	-	BURPS1106A_A1719	-	hypothetical protein
1711	 70.90	0	1696884..1697474	+	196	126457080	-	BURPS1106A_A1720	-	hypothetical protein
1712	 73.39	0	1697610..1698680	+	356	126456411	-	BURPS1106A_A1721	-	putative transporter
1713	 74.67	+1	1698825..1699049	-	74	126455554	-	BURPS1106A_A1722	-	manganese transporter NRAMP
1714	 70.83	0	1699134..1699445	-	103	126458198	-	BURPS1106A_A1723	-	hypothetical protein
1715	 75.44	+1	1699442..1700740	-	432	126456759	-	BURPS1106A_A1724	-	putative oxidoreductase
1716	 74.20	+1	1700819..1701535	+	238	126457179	-	BURPS1106A_A1726	-	transcriptional regulator, TetR family protein
1717	 68.84	0	1701514..1703121	-	535	126457891	ilvA	BURPS1106A_A1725	-	threonine dehydratase
1718	 64.47	0	1703212..1703529	-	105	126457240	-	BURPS1106A_A1727	-	hypothetical protein
1719	 63.57	0	1703531..1703788	+	85	126456909	-	BURPS1106A_A1728	-	hypothetical protein
1720	 65.26	0	1703875..1704801	-	308	126456161	-	BURPS1106A_A1729	-	putative transcriptional regulator
1721	 73.78	0	1704758..1705207	-	149	126458273	-	BURPS1106A_A1730	-	polyphosphate kinase 2 family protein
1722	 72.28	0	1705255..1706751	-	498	126458285	-	BURPS1106A_A1731	-	OmpW family outer membrane protein
1723	 63.58	0	1706765..1708060	-	431	126456523	-	BURPS1106A_A1732	-	putative secretion protein
1724	 68.62	0	1708073..1709095	-	340	126455677	-	BURPS1106A_A1733	-	hypothetical protein
1725	 64.45	0	1709092..1711215	-	707	126457759	-	BURPS1106A_A1734	-	ABC transporter, permease/ATP-binding protein
1726	 67.52	0	1711196..1711312	-	38	126457049	-	BURPS1106A_A1735	-	hypothetical protein
1727	 62.10	0	1711352..1711570	-	72	126456382	-	BURPS1106A_A1736	-	hypothetical protein
1728	 63.22	0	1711784..1711957	-	57	126456657	-	BURPS1106A_A1737	-	hypothetical protein
1729	 63.86	0	1712101..1713666	+	521	126455930	-	BURPS1106A_A1738	-	putative outer membrane protein TolC
1730	 66.67	0	1713869..1715590	-	573	126458442	ggt	BURPS1106A_A1739	-	gamma-glutamyltransferase
1731	 75.15	+1	1716113..1716277	+	54	126457760	-	BURPS1106A_A1740	-	hypothetical protein
1732	 74.76	+1	1716529..1717047	+	172	126456157	-	BURPS1106A_A1741	-	hypothetical protein
1733	 71.50	0	1717109..1717894	+	261	126455576	-	BURPS1106A_A1742	-	hypothetical protein
1734	 58.77	-1	1717978..1718091	-	37	126458079	-	BURPS1106A_A1743	-	hypothetical protein
1735	 75.00	+1	1718430..1723229	+	1599	126457551	-	BURPS1106A_A1744	-	putative ATP-dependent helicase lhr
1736	 76.81	+1	1723351..1723488	+	45	126455608	-	BURPS1106A_A1745	-	hypothetical protein
1737	 73.22	0	1723485..1723667	+	60	126456089	-	BURPS1106A_A1746	-	hypothetical protein
1738	 78.23	+1	1723742..1723888	-	48	126457396	-	BURPS1106A_A1747	-	hypothetical protein
1739	 75.08	+1	1723847..1725142	+	431	126457882	-	BURPS1106A_A1748	-	amino acid permease
1740	 70.77	0	1725396..1726151	+	251	126455942	-	BURPS1106A_A1749	-	hypothetical protein
1741	 65.30	0	1726275..1726712	-	145	126456455	-	BURPS1106A_A1750	-	DGPF domain-containing protein
1742	 76.95	+1	1726729..1726971	+	80	126457896	-	BURPS1106A_A1751	-	hypothetical protein
1743	 70.69	0	1727005..1728123	+	372	126457196	aroG	BURPS1106A_A1752	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1744	 71.74	0	1728203..1728340	+	45	126456836	-	BURPS1106A_A1753	-	hypothetical protein
1745	 71.15	0	1728621..1729289	-	222	126455468	-	BURPS1106A_A1754	-	O-methyltransferase family protein
1746	 70.40	0	1729950..1731449	-	499	126456805	-	BURPS1106A_A1755	-	diguanylate cyclase
1747	 61.98	0	1731423..1731785	+	120	126457351	-	BURPS1106A_A1756	-	HAD-superfamily hydrolase
1748	 75.36	+1	1731967..1732104	-	45	126457768	-	BURPS1106A_A1757	-	hypothetical protein
1749	 63.99	0	1732132..1732803	+	223	126458446	-	BURPS1106A_A1758	-	hypothetical protein
1750	 73.93	0	1733534..1734538	-	334	126456316	pcaQ	BURPS1106A_A1759	-	Pca operon transcriptional activator PcaQ
1751	 67.35	0	1734616..1735350	+	244	126457006	pcaH	BURPS1106A_A1760	-	protocatechuate 3,4-dioxygenase, beta subunit
1752	 68.86	0	1735353..1735946	+	197	126457507	pcaG	BURPS1106A_A1761	-	protocatechuate 3,4-dioxygenase, alpha subunit
1753	 65.19	0	1736191..1736325	-	44	126458225	-	BURPS1106A_A1762	-	hypothetical protein
1754	 71.96	0	1736396..1737226	-	276	126456113	-	BURPS1106A_A1763	-	putative dipeptide transport protein
1755	 75.96	+1	1737223..1738578	-	451	126458057	-	BURPS1106A_A1764	-	aminopeptidase DmpA
1756	 69.97	0	1738578..1739486	-	302	126457454	-	BURPS1106A_A1765	-	putative glutathione ABC transporter, permease protein
1757	 68.30	0	1739494..1740414	-	306	126456160	-	BURPS1106A_A1766	-	putative glutathione ABC transporter, permease protein
1758	 76.87	+1	1740408..1740554	-	48	126458612	-	BURPS1106A_A1767	-	hypothetical protein
1759	 65.90	0	1740551..1742113	-	520	126456602	-	BURPS1106A_A1768	-	putative glutathione ABC transporter, periplasmic glutathione-binding protein
1760	 68.99	0	1742099..1742356	+	85	126455811	-	BURPS1106A_A1770	-	hypothetical protein
1761	 71.20	0	1742317..1744347	-	676	126455670	-	BURPS1106A_A1769	-	putative glutathione ABC transporter, ATP-binding protein
1762	 74.01	0	1744388..1745422	-	344	126457918	-	BURPS1106A_A1771	-	asparaginase
1763	 75.03	+1	1745419..1746363	-	314	126457268	-	BURPS1106A_A1772	-	RpiR family transcriptional regulator
1764	 73.08	0	1746579..1746734	-	51	126456740	-	BURPS1106A_A1773	-	hypothetical protein
1765	 70.06	0	1746715..1748745	+	676	126457740	-	BURPS1106A_A1774	-	BCCT family transporter
1766	 74.58	+1	1749280..1750479	-	399	126458563	-	BURPS1106A_A1775	-	putative esterase
1767	 68.33	0	1750483..1750602	+	39	126456782	-	BURPS1106A_A1776	-	hypothetical protein
1768	 79.76	+1	1750674..1751009	+	111	126458239	-	BURPS1106A_A1777	-	hypothetical protein
1769	 68.79	0	1751088..1752548	+	486	126455551	-	BURPS1106A_A1778	-	phosphoesterase family protein
1770	 73.05	0	1752737..1752877	-	46	126456408	-	BURPS1106A_A1779	-	hypothetical protein
1771	 72.27	0	1753028..1753669	+	213	126456425	-	BURPS1106A_A1780	-	hypothetical protein
1772	 69.52	0	1753716..1754066	-	116	126457922	-	BURPS1106A_A1781	-	hypothetical protein
1773	 64.58	0	1754067..1754210	+	47	126455826	-	BURPS1106A_A1782	-	hypothetical protein
1774	 71.90	0	1754596..1757517	-	973	126456514	ileS	BURPS1106A_A1783	-	isoleucyl-tRNA synthetase
1775	 71.67	0	1757601..1758539	-	312	126457150	-	BURPS1106A_A1784	-	hypothetical protein
1776	 69.31	0	1758536..1759255	-	239	126458214	-	BURPS1106A_A1785	-	threonyl/alanyl tRNA synthetase domain-containing protein
1777	 76.46	+1	1759304..1759732	-	142	126455568	-	BURPS1106A_A1786	-	hypothetical protein
1778	 72.09	0	1759824..1761317	-	497	126456090	-	BURPS1106A_A1787	-	putative glycolate oxidase, subunit GlcD
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.