IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1557	 69.47	0	1515513..1519502	-	1329	126457141	glcF	BURPS1106A_A1566	-	polyketide synthase, type I
1558	 71.11	0	1519495..1524087	-	1530	126455887	glcE	BURPS1106A_A1567	-	polyketide synthase, type I
1559	 69.30	0	1524095..1528687	-	1530	126456931	-	BURPS1106A_A1568	-	putative siderophore non-ribosomal peptide synthetase MbaF
1560	 65.65	0	1528882..1530951	+	689	126457254	prlC	BURPS1106A_A1569	-	oligopeptidase A
1561	 62.59	0	1531506..1532216	+	236	126458323	-	BURPS1106A_A1570	-	ATP-dependent transcription regulator LuxR
1562	 68.07	0	1532333..1533190	-	285	126455508	-	BURPS1106A_A1571	-	hypothetical protein
1563	 69.99	0	1533241..1534473	-	410	126456393	-	BURPS1106A_A1572	-	monovalent cation:proton antiporter-2 (CPA2) family protein
1564	 60.00	-1	1534439..1534603	+	54	126457269	-	BURPS1106A_A1573	-	hypothetical protein
1565	 49.17	-2	1534655..1534774	+	39	126458498	-	BURPS1106A_A1574	-	hypothetical protein
1566	 76.26	+1	1534908..1535105	-	65	126455998	-	BURPS1106A_A1575	-	hypothetical protein
1567	 63.97	0	1535106..1535513	+	135	126456722	-	BURPS1106A_A1576	-	hypothetical protein
1568	 64.41	0	1535596..1536216	+	206	126458133	-	BURPS1106A_A1577	-	autoinducer synthetase
1569	 70.55	0	1536285..1537802	+	505	126455823	-	BURPS1106A_A1578	-	linear gramicidin synthetase subunit C
1570	 60.83	-1	1537799..1538038	+	79	126457213	-	BURPS1106A_A1580	-	phosphopantetheine attachment site, putative
1571	 78.63	+1	1538014..1538130	-	38	126456479	-	BURPS1106A_A1579	-	hypothetical protein
1572	 63.42	0	1538176..1539099	+	307	126455814	-	BURPS1106A_A1581	-	cmaB protein
1573	 74.07	+1	1539190..1539486	+	98	126456460	-	BURPS1106A_A1582	-	hypothetical protein
1574	 65.49	0	1539623..1539877	+	84	126456921	-	BURPS1106A_A1583	-	metabolite-proton symporter
1575	 62.76	0	1540409..1541278	+	289	126455767	-	BURPS1106A_A1584	-	hypothetical protein
1576	 66.08	0	1541408..1541749	+	113	126457103	-	BURPS1106A_A1585	-	hypothetical protein
1577	 70.83	0	1541821..1541964	+	47	126456495	-	BURPS1106A_A1586	-	hypothetical protein
1578	 71.06	0	1542087..1542359	-	90	126456946	-	BURPS1106A_A1587	-	phosphopantetheine attachment site domain-containing protein
1579	 75.80	+1	1542356..1544173	-	605	126456159	-	BURPS1106A_A1588	-	AMP-binding domain-containing protein
1580	 74.05	0	1544170..1545117	-	315	126457781	-	BURPS1106A_A1589	-	luciferase-like monooxygenase
1581	 73.99	0	1545129..1546193	-	354	126456919	-	BURPS1106A_A1590	-	ACC deaminase/D-cysteine desulfhydrase family protein
1582	 73.18	0	1546190..1547509	-	439	126455979	-	BURPS1106A_A1591	-	hypothetical protein
1583	 75.17	+1	1547506..1552209	-	1567	126458241	-	BURPS1106A_A1592	-	non-ribosomal peptide synthase
1584	 75.97	+1	1552227..1556267	-	1346	126456571	-	BURPS1106A_A1593	-	non-ribosomal peptide synthase
1585	 70.72	0	1556264..1557325	-	353	126456510	-	BURPS1106A_A1594	-	syringomycin biosynthesis enzyme
1586	 75.61	+1	1557351..1566797	-	3148	126457202	-	BURPS1106A_A1595	-	non-ribosomal peptide synthase/polyketide synthase
1587	 68.91	0	1566813..1567571	-	252	126457958	-	BURPS1106A_A1596	-	hypothetical protein
1588	 55.68	-2	1567608..1567871	-	87	126456453	-	BURPS1106A_A1597	-	hypothetical protein
1589	 46.00	-2	1567834..1567983	+	49	126457456	-	BURPS1106A_A1598	-	hypothetical protein
1590	 59.63	-1	1568184..1568453	-	89	126455921	-	BURPS1106A_A1599	-	hypothetical protein
1591	 73.75	0	1568457..1569938	+	493	126456808	-	BURPS1106A_A1600	-	GntR family regulatory protein
1592	 67.78	0	1570170..1570619	+	149	126456767	-	BURPS1106A_A1601	-	transposase
1593	 73.95	0	1570604..1571056	+	150	126457670	-	BURPS1106A_A1602	-	cupin domain-containing protein
1594	 65.93	0	1571198..1571332	-	44	126457911	ecnB	BURPS1106A_A1603	-	bacteriolytic lipoprotein entericidin B
1595	 64.17	0	1571335..1571574	-	79	126456570	-	BURPS1106A_A1604	-	hypothetical protein
1596	 66.90	0	1571611..1572906	+	431	126456392	pyrB	BURPS1106A_A1605	-	aspartate carbamoyltransferase
1597	 69.05	0	1572945..1573196	+	83	126456106	-	BURPS1106A_A1606	-	hypothetical protein
1598	 66.31	0	1573310..1575556	+	748	126458358	-	BURPS1106A_A1607	-	TonB-dependent siderophore receptor
1599	 73.23	0	1575558..1576304	+	248	126457502	-	BURPS1106A_A1608	-	hypothetical protein
1600	 67.40	0	1576301..1576984	+	227	126456653	-	BURPS1106A_A1609	-	putative hydroxylase
1601	 61.57	-1	1577411..1577626	-	71	126458390	-	BURPS1106A_A1610	-	transposase
1602	 59.17	-1	1578133..1578492	-	119	126457874	-	BURPS1106A_A1611	-	IS3 family transposase orfA
1603	 67.80	0	1578675..1578938	-	87	126457136	-	BURPS1106A_A1612	-	PAAR motif-containing protein
1604	 60.34	-1	1578948..1580606	-	552	126457180	-	BURPS1106A_A1613	-	hypothetical protein
1605	 63.63	0	1580625..1582865	-	746	126457785	-	BURPS1106A_A1614	-	hypothetical protein
1606	 68.71	0	1582879..1585665	-	928	126458074	-	BURPS1106A_A1615	-	putative Rhs element Vgr protein
1607	 60.13	-1	1585986..1586291	-	101	126455991	-	BURPS1106A_A1616	-	H-NS histone family protein
1608	 45.20	-2	1587920..1589116	+	398	126457373	-	BURPS1106A_A1617	-	major facilitator family transporter
1609	 56.89	-1	1589251..1589751	+	166	126458145	-	BURPS1106A_A1618	-	putative thiamine-phosphate pyrophosphorylase
1610	 53.59	-2	1590061..1590213	+	50	126455656	-	BURPS1106A_A1619	-	hypothetical protein
1611	 75.50	+1	1591025..1591624	+	199	126456325	-	BURPS1106A_A1620	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1612	 71.33	0	1591737..1591886	+	49	126455874	-	BURPS1106A_A1621	-	hypothetical protein
1613	 65.04	0	1592155..1592277	+	40	126456991	-	BURPS1106A_A1622	-	hypothetical protein
1614	 68.08	0	1592561..1594114	+	517	126457543	-	BURPS1106A_A1623	-	methyl-accepting chemotaxis protein
1615	 72.17	0	1594119..1594445	-	108	126458616	-	BURPS1106A_A1624	-	hypothetical protein
1616	 68.18	0	1594713..1596497	+	594	126455948	-	BURPS1106A_A1625	-	penicillin-binding protein
1617	 62.46	0	1596628..1596936	-	102	126456796	-	BURPS1106A_A1626	-	hypothetical protein
1618	 69.86	0	1596916..1597917	+	333	126457278	araF	BURPS1106A_A1627	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
1619	 70.83	0	1597982..1598749	+	255	126458197	-	BURPS1106A_A1628	-	short chain dehydrogenase
1620	 71.58	0	1599158..1599340	-	60	126457182	-	BURPS1106A_A1629	-	hypothetical protein
1621	 67.22	0	1599550..1599729	+	59	126458194	-	BURPS1106A_A1630	-	hypothetical protein
1622	 65.38	0	1600478..1601254	+	258	126457031	-	BURPS1106A_A1631	-	hypothetical protein
1623	 62.50	0	1601379..1602722	+	447	126456259	-	BURPS1106A_A1632	-	hypothetical protein
1624	 66.25	0	1602921..1603889	+	322	126458601	-	BURPS1106A_A1633	-	geranyltranstransferase
1625	 62.71	0	1603999..1605111	+	370	126457746	-	BURPS1106A_A1634	-	terpene synthase family protein
1626	 70.26	0	1605474..1607225	-	583	126456822	-	BURPS1106A_A1635	-	transporter, monovalent cation:proton antiporter-2 (CPA2) family protein
1627	 69.72	0	1607215..1607574	-	119	126455884	-	BURPS1106A_A1636	-	hypothetical protein
1628	 75.50	+1	1607571..1607921	-	116	126456700	-	BURPS1106A_A1637	-	hypothetical protein
1629	 67.55	0	1608455..1609357	+	300	126458222	-	BURPS1106A_A1638	-	hypothetical protein
1630	 68.59	0	1609458..1611431	+	657	126457323	-	BURPS1106A_A1639	-	hypothetical protein
1631	 69.75	0	1611445..1611801	+	118	126456427	-	BURPS1106A_A1640	-	hypothetical protein
1632	 71.33	0	1612030..1612308	+	92	126458028	-	BURPS1106A_A1641	-	hypothetical protein
1633	 68.02	0	1612466..1613128	-	220	126457282	-	BURPS1106A_A1642	-	3-demethylubiquinone-9 3-methyltransferase family protein
1634	 67.55	0	1613095..1614117	-	340	126456565	-	BURPS1106A_A1643	-	Mg2+/Co2+ transporter
1635	 72.89	0	1614196..1614420	+	74	126455579	-	BURPS1106A_A1644	-	hypothetical protein
1636	 67.42	0	1614417..1614548	+	43	126456260	-	BURPS1106A_A1645	-	hypothetical protein
1637	 72.24	0	1614589..1615413	+	274	126455573	-	BURPS1106A_A1646	-	DeoR family transcriptional regulator
1638	 73.26	0	1615447..1616583	+	378	126457667	-	BURPS1106A_A1647	-	major facilitator family transporter
1639	 67.47	0	1616613..1616861	+	82	126456953	-	BURPS1106A_A1648	-	hypothetical protein
1640	 68.79	0	1616992..1617462	-	156	126455931	-	BURPS1106A_A1649	-	hypothetical protein
1641	 68.93	0	1618254..1619534	+	426	126458388	-	BURPS1106A_A1650	-	putative sugar ABC transporter, periplasmic sugar-binding protein
1642	 66.10	0	1619677..1620555	+	292	126457124	-	BURPS1106A_A1651	-	putative sugar ABC transporter, permease protein
1643	 69.00	0	1620543..1621355	+	270	126456644	-	BURPS1106A_A1652	-	putative sugar ABC transporter, permease protein
1644	 70.43	0	1621377..1622411	+	344	126457208	-	BURPS1106A_A1653	-	putative D-xylulose reductase
1645	 72.28	0	1622415..1623608	+	397	126457522	-	BURPS1106A_A1654	-	putative sugar ABC transporter, ATP-binding protein
1646	 69.42	0	1623605..1624657	+	350	126458411	-	BURPS1106A_A1655	-	AraC family transcriptional regulator
1647	 73.58	0	1624654..1626114	+	486	126455796	xylB	BURPS1106A_A1656	-	xylulokinase
1648	 69.91	0	1626222..1626437	-	71	126456273	-	BURPS1106A_A1657	-	hypothetical protein
1649	 65.91	0	1626443..1626574	-	43	126457163	-	BURPS1106A_A1658	-	hypothetical protein
1650	 55.56	-2	1626556..1626708	-	50	126456059	-	BURPS1106A_A1659	-	hypothetical protein
1651	 72.26	0	1626731..1627732	+	333	126456879	-	BURPS1106A_A1660	-	D-alanyl-D-alanine carboxypeptidase family protein
1652	 74.08	+1	1628087..1629799	+	570	126457512	-	BURPS1106A_A1661	-	penicillin-binding protein
1653	 81.28	+2	1630193..1630411	-	72	126458409	-	BURPS1106A_A1662	-	hypothetical protein
1654	 72.07	0	1630392..1634648	-	1418	126455724	-	BURPS1106A_A1663	-	nitrate reductase, putative
1655	 69.23	0	1634692..1635042	-	116	126455543	nirD	BURPS1106A_A1664	-	nitrite reductase [NAD(P)H], small subunit
1656	 69.72	0	1635080..1637635	-	851	126458608	nirB	BURPS1106A_A1665	-	nitrite reductase [NAD(P)H], large subunit
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.