IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1460	 77.34	+1	1426839..1427222	+	127	126455674	-	BURPS1106A_A1469	-	hypothetical protein
1461	 69.75	0	1427307..1428602	+	431	126458291	-	BURPS1106A_A1471	-	putative methyltransferase
1462	 80.14	+1	1428579..1428860	-	93	126455966	-	BURPS1106A_A1470	-	hypothetical protein
1463	 69.74	0	1428857..1430386	-	509	126457723	-	BURPS1106A_A1472	-	putative thiaminase I
1464	 72.50	0	1430377..1431387	-	336	126456062	thiD	BURPS1106A_A1473	-	phosphomethylpyrimidine kinase
1465	 70.72	0	1431405..1432145	-	246	126457125	-	BURPS1106A_A1474	-	UbiE/COQ5 family methlytransferase
1466	 67.88	0	1432161..1433150	-	329	126456897	-	BURPS1106A_A1475	-	putative thymidylate synthase
1467	 65.13	0	1433152..1433607	-	151	126456446	-	BURPS1106A_A1476	-	putative nucleoside 2-deoxyribosyltransferase
1468	 71.28	0	1433604..1434080	-	158	126458331	nudF	BURPS1106A_A1477	-	ADP-ribose pyrophosphatase
1469	 57.22	-1	1434073..1434252	-	59	126457636	-	BURPS1106A_A1478	-	hypothetical protein
1470	 63.10	0	1434481..1434648	-	55	126457656	-	BURPS1106A_A1479	-	hypothetical protein
1471	 68.09	0	1434687..1435460	+	257	126456549	-	BURPS1106A_A1480	-	cyclopropane-fatty-acyl-phospholipid synthase
1472	 68.76	0	1435517..1436665	+	382	126455863	-	BURPS1106A_A1481	-	putative gamma-butyrobetaine,2-oxoglutarate dioxygenase
1473	 74.55	+1	1436862..1437698	-	278	126457945	-	BURPS1106A_A1482	-	hypothetical protein
1474	 73.75	0	1437865..1438386	+	173	126457886	-	BURPS1106A_A1483	-	amino acid permease
1475	 69.35	0	1438418..1439908	+	496	126456544	-	BURPS1106A_A1484	-	basic amino acid/polyamine antiporter (APA) family protein
1476	 72.54	0	1440043..1440825	+	260	126456442	-	BURPS1106A_A1485	-	S54 family peptidase
1477	 79.17	+1	1440833..1441000	-	55	126455478	-	BURPS1106A_A1486	-	hypothetical protein
1478	 70.31	0	1441006..1443006	-	666	126458626	ftsH	BURPS1106A_A1487	-	ATP-dependent metalloprotease FtsH
1479	 73.88	0	1443060..1443572	-	170	126457132	-	BURPS1106A_A1488	-	hypothetical protein
1480	 76.54	+1	1443672..1444127	-	151	126456773	-	BURPS1106A_A1489	-	hypothetical protein
1481	 65.28	0	1444119..1444262	+	47	126456111	-	BURPS1106A_A1490	-	hypothetical protein
1482	 67.54	0	1444277..1444390	+	37	126457360	-	BURPS1106A_A1491	-	hypothetical protein
1483	 70.94	0	1444387..1446141	+	584	126456656	-	BURPS1106A_A1493	-	hypothetical protein
1484	 82.61	+2	1446138..1446275	-	45	126457472	-	BURPS1106A_A1492	-	hypothetical protein
1485	 70.24	0	1446272..1446943	-	223	126456207	-	BURPS1106A_A1494	-	hypothetical protein
1486	 42.31	-2	1446925..1447080	+	51	126458059	-	BURPS1106A_A1495	-	hypothetical protein
1487	 72.59	0	1447094..1448191	+	365	126457232	-	BURPS1106A_A1496	-	RND family efflux transporter MFP subunit
1488	 68.66	0	1448188..1451298	+	1036	126456706	-	BURPS1106A_A1497	-	RND  HAE1/HME family protein
1489	 80.70	+2	1451327..1451440	-	37	126455822	-	BURPS1106A_A1498	-	hypothetical protein
1490	 71.86	0	1451433..1452971	+	512	126457707	oprB	BURPS1106A_A1499	-	outer membrane efflux protein OprB
1491	 56.57	-1	1452986..1453282	+	98	126456788	-	BURPS1106A_A1500	-	hypothetical protein
1492	 66.50	0	1453358..1453945	+	195	126456335	ribA	BURPS1106A_A1501	-	GTP cyclohydrolase II
1493	 70.26	0	1453942..1455639	+	565	126458593	-	BURPS1106A_A1502	-	WD domain-containing protein
1494	 72.15	0	1455636..1456346	+	236	126455924	-	BURPS1106A_A1503	-	hypothetical protein
1495	 71.34	0	1456343..1457326	+	327	126456628	-	BURPS1106A_A1504	-	hypothetical protein
1496	 76.94	+1	1457465..1458652	+	395	126457369	ribD	BURPS1106A_A1505	-	riboflavin biosynthesis protein RibD
1497	 67.24	0	1458712..1459764	+	350	126458033	-	BURPS1106A_A1506	-	O-methyltransferase
1498	 70.49	0	1459767..1460630	+	287	126456122	-	BURPS1106A_A1507	-	glyoxalase family protein
1499	 73.08	0	1460662..1462065	+	467	126457017	-	BURPS1106A_A1508	-	major facilitator transporter
1500	 70.33	0	1462139..1462630	+	163	126456082	-	BURPS1106A_A1509	-	hypothetical protein
1501	 74.47	+1	1462649..1464058	+	469	126456969	-	BURPS1106A_A1510	-	hypothetical protein
1502	 70.67	0	1464075..1464224	+	49	126457483	-	BURPS1106A_A1511	-	hypothetical protein
1503	 62.85	0	1464273..1465031	-	252	126458443	-	BURPS1106A_A1512	-	LuxR family transcriptional regulator
1504	 59.11	-1	1465168..1465392	+	74	126457433	-	BURPS1106A_A1513	-	hypothetical protein
1505	 66.21	0	1465458..1465898	-	146	126458556	-	BURPS1106A_A1514	-	hypothetical protein
1506	 69.34	0	1465995..1468016	-	673	126455849	-	BURPS1106A_A1515	-	FAD/FMN-binding/pyridine nucleotide-disulphide oxidoreductase family protein
1507	 52.85	-2	1467933..1468055	+	40	126456752	-	BURPS1106A_A1516	-	hypothetical protein
1508	 68.36	0	1468132..1468722	+	196	126457210	-	BURPS1106A_A1517	-	PadR family transcriptional regulator
1509	 74.22	+1	1468750..1469808	+	352	126458169	-	BURPS1106A_A1518	-	hydroxyethylthiazole kinase, putative
1510	 58.33	-1	1469842..1470057	-	71	126457175	-	BURPS1106A_A1519	-	hypothetical protein
1511	 46.03	-2	1470056..1470244	+	62	126457884	-	BURPS1106A_A1520	-	hypothetical protein
1512	 66.31	0	1470354..1471190	+	278	126458623	-	BURPS1106A_A1521	-	taurine catabolism dioxygenase TauD
1513	 68.47	0	1471305..1472192	+	295	126455866	-	BURPS1106A_A1522	-	auxin efflux carrier (AEC) family protein
1514	 72.97	0	1472452..1473165	-	237	126456750	-	BURPS1106A_A1523	-	hypothetical protein
1515	 65.12	0	1473229..1473486	-	85	126455664	-	BURPS1106A_A1524	-	hypothetical protein
1516	 69.51	0	1473884..1474831	+	315	126456282	-	BURPS1106A_A1525	-	universal stress family protein
1517	 69.06	0	1475050..1475466	-	138	126455586	-	BURPS1106A_A1526	-	hypothetical protein
1518	 70.91	0	1475897..1476415	-	172	126457616	-	BURPS1106A_A1527	-	putative hydrogenase subunit
1519	 72.81	0	1476415..1478139	-	574	126456901	-	BURPS1106A_A1528	-	putative hydrogenase subunit
1520	 67.83	0	1478143..1479603	-	486	126455834	-	BURPS1106A_A1529	-	hydrogenase 4 subunit F
1521	 64.24	0	1479596..1480255	-	219	126458319	-	BURPS1106A_A1530	-	putative hydrogenase, membrane subunit
1522	 69.72	0	1480256..1481206	-	316	126457558	-	BURPS1106A_A1531	-	putative hydrogenase, membrane subunit
1523	 69.71	0	1481200..1483206	-	668	126456695	-	BURPS1106A_A1532	-	hydrogenase 4 subunit B
1524	 73.47	0	1483260..1483406	+	48	126457014	-	BURPS1106A_A1533	-	hypothetical protein
1525	 68.73	0	1483565..1484338	+	257	126457673	-	BURPS1106A_A1534	-	hypothetical protein
1526	 68.90	0	1484616..1485062	+	148	126458571	-	BURPS1106A_A1535	-	hypothetical protein
1527	 69.35	0	1485120..1485380	+	86	126457662	-	BURPS1106A_A1536	-	putative phosphocarrier protein HPr
1528	 71.11	0	1485422..1486231	+	269	126456714	-	BURPS1106A_A1537	-	spermine/spermidine synthase family protein
1529	 66.67	0	1486338..1486556	+	72	126458238	-	BURPS1106A_A1538	-	hypothetical protein
1530	 74.92	+1	1486597..1486923	+	108	126457341	-	BURPS1106A_A1539	-	hypothetical protein
1531	 68.71	0	1486928..1488202	-	424	126456609	-	BURPS1106A_A1540	-	major facilitator family transporter
1532	 72.68	0	1488227..1489024	-	265	126456222	-	BURPS1106A_A1541	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
1533	 66.37	0	1489044..1489727	-	227	126457993	narI	BURPS1106A_A1542	-	respiratory nitrate reductase, gamma subunit
1534	 71.16	0	1489935..1490624	-	229	126458270	narJ	BURPS1106A_A1543	-	nitrate reductase molybdenum cofactor assembly chaperone
1535	 65.36	0	1490621..1492150	-	509	126458481	narH	BURPS1106A_A1544	-	nitrate reductase, beta subunit
1536	 68.32	0	1492147..1495950	-	1267	126458494	narG	BURPS1106A_A1545	-	nitrate reductase, alpha subunit
1537	 74.54	+1	1495990..1496205	-	71	126457758	-	BURPS1106A_A1546	-	hypothetical protein
1538	 55.80	-1	1496211..1496348	-	45	126456817	-	BURPS1106A_A1547	-	hypothetical protein
1539	 70.07	0	1496340..1496486	+	48	126458146	-	BURPS1106A_A1548	-	hypothetical protein
1540	 58.00	-1	1496490..1496639	+	49	126456639	-	BURPS1106A_A1549	-	hypothetical protein
1541	 71.51	0	1496650..1498692	+	680	126455525	-	BURPS1106A_A1550	-	sensory box histidine kinase
1542	 66.51	0	1498689..1499336	+	215	126458472	-	BURPS1106A_A1551	-	LuxR family DNA-binding response regulator
1543	 79.71	+1	1499591..1499728	-	45	126457776	-	BURPS1106A_A1552	-	hypothetical protein
1544	 68.86	0	1499898..1500308	+	136	126457791	-	BURPS1106A_A1553	-	response regulator
1545	 65.90	0	1500321..1501100	+	259	126457602	-	BURPS1106A_A1554	-	Crp/FNR family transcriptional regulator
1546	 74.07	+1	1501313..1501474	-	53	126455981	-	BURPS1106A_A1555	-	hypothetical protein
1547	 67.77	0	1501485..1503203	-	572	126458493	-	BURPS1106A_A1556	-	CocE/NonD family hydrolase
1548	 66.67	0	1503317..1503634	-	105	126457804	-	BURPS1106A_A1557	-	hypothetical protein
1549	 57.83	-1	1503697..1504680	+	327	126455633	-	BURPS1106A_A1559	-	TauD/TfdA family dioxygenase
1550	 72.11	0	1504674..1504820	-	48	126457169	-	BURPS1106A_A1558	-	hypothetical protein
1551	 69.06	0	1504931..1506181	-	416	126458126	-	BURPS1106A_A1560	-	major facilitator family transporter
1552	 72.72	0	1506237..1507112	-	291	126457363	-	BURPS1106A_A1561	-	thioesterase domain-containing protein
1553	 71.04	0	1507093..1507938	-	281	126456715	-	BURPS1106A_A1562	-	acetyltransferase
1554	 67.73	0	1507943..1509535	-	530	126458315	-	BURPS1106A_A1563	-	metallo-beta-lactamase family protein
1555	 73.15	0	1509548..1512016	-	822	126455725	-	BURPS1106A_A1564	-	polyketide synthase, type I
1556	 70.20	0	1511997..1515473	-	1158	126457705	-	BURPS1106A_A1565	-	putative non-ribosomal peptide synthase/polyketide synthase
1557	 69.47	0	1515513..1519502	-	1329	126457141	glcF	BURPS1106A_A1566	-	polyketide synthase, type I
1558	 71.11	0	1519495..1524087	-	1530	126455887	glcE	BURPS1106A_A1567	-	polyketide synthase, type I
1559	 69.30	0	1524095..1528687	-	1530	126456931	-	BURPS1106A_A1568	-	putative siderophore non-ribosomal peptide synthetase MbaF
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.