IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1147	 77.06	+1	1104031..1104309	-	92	126458357	-	BURPS1106A_A1155	-	hypothetical protein
1148	 71.12	0	1104455..1105060	+	201	126456005	-	BURPS1106A_A1156	-	universal stress family protein
1149	 72.74	0	1105439..1106278	-	279	126455802	-	BURPS1106A_A1157	-	universal stress family protein
1150	 73.13	0	1106275..1106769	-	164	126458212	-	BURPS1106A_A1158	-	universal stress family protein
1151	 70.12	0	1106941..1107780	-	279	126457159	-	BURPS1106A_A1159	-	universal stress family protein
1152	 68.97	0	1108030..1109070	+	346	126456898	-	BURPS1106A_A1160	-	zinc-binding dehydrogenase family oxidoreductase
1153	 79.03	+1	1109180..1109446	-	88	126456252	-	BURPS1106A_A1161	-	hypothetical protein
1154	 70.43	0	1109440..1110528	+	362	126458308	-	BURPS1106A_A1162	-	hypothetical protein
1155	 72.18	0	1110583..1111923	+	446	126457457	-	BURPS1106A_A1163	-	major facilitator family transporter
1156	 73.77	0	1111884..1112249	+	121	126458371	-	BURPS1106A_A1164	-	hypothetical protein
1157	 53.33	-2	1112321..1112440	-	39	126456221	-	BURPS1106A_A1165	-	hypothetical protein
1158	 74.80	+1	1112434..1113195	+	253	126456315	-	BURPS1106A_A1166	-	short chain dehydrogenase/reductase family oxidoreductase
1159	 71.61	0	1113211..1114080	+	289	126458192	-	BURPS1106A_A1167	-	hypothetical protein
1160	 63.64	0	1114400..1114531	+	43	126455705	-	BURPS1106A_A1168	-	hypothetical protein
1161	 67.61	0	1114540..1114857	-	105	126457658	-	BURPS1106A_A1169	-	hypothetical protein
1162	 66.19	0	1114971..1116428	+	485	126458350	-	BURPS1106A_A1170	-	amino acid permease
1163	 74.01	0	1116554..1116730	+	58	126458451	-	BURPS1106A_A1171	-	hypothetical protein
1164	 63.74	0	1116869..1117039	+	56	126456128	-	BURPS1106A_A1172	-	hypothetical protein
1165	 63.49	0	1117351..1117665	+	104	126456737	-	BURPS1106A_A1174	-	H-NS histone family protein
1166	 74.73	+1	1117662..1117847	-	61	126456007	-	BURPS1106A_A1173	-	hypothetical protein
1167	 71.15	0	1118059..1119375	-	438	126457836	-	BURPS1106A_A1175	-	acyl-CoA dehydrogenase domain-containing protein
1168	 67.07	0	1119797..1120294	-	165	126457244	-	BURPS1106A_A1176	-	hypothetical protein
1169	 76.52	+1	1120293..1120424	+	43	126456604	-	BURPS1106A_A1178	-	hypothetical protein
1170	 63.30	0	1120412..1121332	-	306	126455488	-	BURPS1106A_A1177	-	hypothetical protein
1171	 71.17	0	1121473..1121694	+	73	126457264	-	BURPS1106A_A1179	-	hypothetical protein
1172	 68.68	0	1121691..1122287	+	198	126458360	-	BURPS1106A_A1180	-	hypothetical protein
1173	 71.64	0	1122392..1123798	+	468	126456073	-	BURPS1106A_A1181	-	nitrilotriacetate monooxygenase component A
1174	 71.95	0	1123940..1125265	+	441	126456984	-	BURPS1106A_A1182	-	IUNH family nucleoside hydrolase
1175	 68.92	0	1125289..1126221	-	310	126458141	rbsK	BURPS1106A_A1183	-	ribokinase
1176	 70.31	0	1126267..1127007	+	246	126457424	-	BURPS1106A_A1184	-	hypothetical protein
1177	 71.50	0	1127226..1128920	+	564	126457844	-	BURPS1106A_A1185	-	hypothetical protein
1178	 72.09	0	1128917..1131184	+	755	126456736	-	BURPS1106A_A1186	-	putative ATP-dependent helicase
1179	 72.54	0	1131219..1132511	+	430	126457979	-	BURPS1106A_A1187	-	L-2-amino-thiazoline-4-carboxylic acid hydrolase domain-containing protein
1180	 73.17	0	1132498..1132743	+	81	126457815	amaB	BURPS1106A_A1188	-	N-carbamyl-L-cysteine amidohydrolase
1181	 71.37	0	1132737..1133246	+	169	126456561	amaB	BURPS1106A_A1189	-	N-carbamyl-L-cysteine amidohydrolase
1182	 66.73	0	1133286..1134809	+	507	126455482	fliD	BURPS1106A_A1190	-	flagellar hook-associated protein
1183	 81.20	+2	1134806..1134922	+	38	126457425	-	BURPS1106A_A1191	-	hypothetical protein
1184	 71.33	0	1135206..1136105	-	299	126456556	-	BURPS1106A_A1192	-	LysR family transcriptional regulator
1185	 72.63	0	1136211..1136897	+	228	126456195	-	BURPS1106A_A1193	-	hypothetical protein
1186	 71.29	0	1136894..1137196	+	100	126457097	-	BURPS1106A_A1194	-	aldo/keto reductase family oxidoreductase
1187	 66.77	0	1137228..1138232	+	334	126457566	-	BURPS1106A_A1195	-	aldo/keto reductase family oxidoreductase
1188	 68.90	0	1138558..1139499	+	313	126456893	-	BURPS1106A_A1196	-	protein MoaF
1189	 76.02	+1	1139496..1140329	+	277	126456757	-	BURPS1106A_A1197	-	3-ketoacyl-(acyl-carrier-protein) reductase
1190	 65.38	0	1140573..1140728	-	51	126458353	-	BURPS1106A_A1198	-	hypothetical protein
1191	 71.75	0	1140793..1141500	+	235	126457205	-	BURPS1106A_A1199	-	LuxR family transcriptional regulator
1192	 71.43	0	1141544..1141690	+	48	126456511	-	BURPS1106A_A1200	-	hypothetical protein
1193	 70.92	0	1141757..1143259	+	500	126455560	ubiC	BURPS1106A_A1201	-	phenylacetaldehyde dehydrogenase
1194	 67.70	0	1143297..1144646	+	449	126457846	-	BURPS1106A_A1202	-	hypothetical protein
1195	 69.01	0	1144855..1146345	+	496	126457600	-	BURPS1106A_A1203	-	amino acid permease
1196	 75.20	+1	1146342..1146962	+	206	126458275	-	BURPS1106A_A1204	-	hypothetical protein
1197	 69.80	0	1146959..1147978	+	339	126456182	-	BURPS1106A_A1205	-	AraC family transcriptional regulator
1198	 65.59	0	1148208..1149410	+	400	126456925	-	BURPS1106A_A1206	-	outer membrane porin
1199	 67.38	0	1149713..1149991	+	92	126456110	-	BURPS1106A_A1207	-	hypothetical protein
1200	 67.24	0	1150100..1150801	-	233	126457004	-	BURPS1106A_A1208	-	LysE family translocator protein
1201	 69.55	0	1150808..1151362	+	184	126457890	-	BURPS1106A_A1209	-	acetyltransferase
1202	 70.24	0	1151496..1152557	-	353	126455603	nemA	BURPS1106A_A1210	-	N-ethylmaleimide reductase
1203	 66.34	0	1152607..1152912	-	101	126456484	-	BURPS1106A_A1211	-	ArsR family transcriptional regulator
1204	 72.87	0	1153032..1153289	-	85	126457338	-	BURPS1106A_A1212	-	hypothetical protein
1205	 74.13	+1	1153429..1153830	+	133	126455748	-	BURPS1106A_A1213	-	hypothetical protein
1206	 62.58	0	1154244..1155368	+	374	126456618	-	BURPS1106A_A1214	-	outer membrane porin
1207	 60.15	-1	1155590..1155988	-	132	126458551	rnk	BURPS1106A_A1215	-	regulator of nucleoside diphosphate kinase
1208	 49.28	-2	1156208..1156345	+	45	126457892	-	BURPS1106A_A1216	-	hypothetical protein
1209	 66.67	0	1156508..1156849	+	113	126456677	-	BURPS1106A_A1217	-	hypothetical protein
1210	 59.35	-1	1157054..1157518	-	154	126457700	-	BURPS1106A_A1218	-	CBS domain-containing protein
1211	 65.44	0	1157695..1158348	+	217	126455752	ribA	BURPS1106A_A1220	-	GTP cyclohydrolase II
1212	 70.44	0	1158311..1159159	-	282	126458066	-	BURPS1106A_A1219	-	hypothetical protein
1213	 69.12	0	1159221..1159832	-	203	126457870	bpsI	BURPS1106A_A1221	-	autoinducer synthase BpsI
1214	 67.12	0	1160057..1160500	-	147	126456981	-	BURPS1106A_A1222	-	hypothetical protein
1215	 64.17	0	1160574..1161293	+	239	126458533	bpsR	BURPS1106A_A1223	-	autoinducer-binding transcriptional regulator BpsR
1216	 65.55	0	1161329..1162045	-	238	126457465	-	BURPS1106A_A1224	-	putative magnesium transporter
1217	 67.53	0	1162048..1162278	+	76	126456547	-	BURPS1106A_A1225	-	hypothetical protein
1218	 71.89	0	1162711..1163916	-	401	126456022	-	BURPS1106A_A1226	-	Ser/Thr protein phosphatase family protein
1219	 65.81	0	1163979..1164563	-	194	126457091	-	BURPS1106A_A1227	-	hypothetical protein
1220	 71.93	0	1164696..1165322	+	208	126456592	alkB	BURPS1106A_A1228	-	2OG-Fe(II) oxygenase family oxidoreductase
1221	 69.61	0	1165409..1166359	+	316	126455848	-	BURPS1106A_A1229	-	IclR family transcriptional regulator
1222	 62.70	0	1166506..1166631	-	41	126457939	-	BURPS1106A_A1230	-	hypothetical protein
1223	 64.20	0	1166676..1167974	-	432	126455983	-	BURPS1106A_A1231	-	outer membrane porin
1224	 66.04	0	1168198..1168515	+	105	126458482	-	BURPS1106A_A1232	-	Rieske family iron-sulfur cluster-binding protein
1225	 68.59	0	1168517..1168828	+	103	126457045	-	BURPS1106A_A1233	-	hypothetical protein
1226	 66.57	0	1168863..1169930	+	355	126456066	-	BURPS1106A_A1234	-	Rieske family iron-sulfur cluster-binding protein
1227	 72.89	0	1169927..1170697	+	256	126455650	-	BURPS1106A_A1235	-	short chain dehydrogenase
1228	 65.15	0	1170736..1171263	+	175	126457910	-	BURPS1106A_A1236	-	cupin domain-containing protein
1229	 74.61	+1	1171280..1172185	+	301	126458161	-	BURPS1106A_A1237	-	alpha/beta fold family hydrolase
1230	 68.19	0	1172182..1173036	+	284	126457496	-	BURPS1106A_A1238	-	IclR family transcriptional regulator
1231	 68.67	0	1173033..1173830	+	265	126456763	-	BURPS1106A_A1239	-	short chain dehydrogenase
1232	 70.55	0	1173823..1175496	+	557	126456256	ilvB	BURPS1106A_A1240	-	hypothetical protein
1233	 72.30	0	1175489..1176304	+	271	126457676	-	BURPS1106A_A1241	-	L-aspartate dehydrogenase
1234	 70.69	0	1176330..1177820	+	496	126456955	-	BURPS1106A_A1242	-	aldehyde dehydrogenase (NAD) family protein
1235	 69.36	0	1177837..1178802	+	321	126457250	-	BURPS1106A_A1243	-	glyoxalase family protein
1236	 72.43	0	1178828..1180042	+	404	126457908	-	BURPS1106A_A1244	-	pyridine nucleotide-disulfide oxidoreductase, class I
1237	 68.09	0	1180077..1181483	+	468	126458496	-	BURPS1106A_A1245	-	major facilitator family transporter
1238	 52.29	-2	1181900..1182052	-	50	126455997	-	BURPS1106A_A1246	-	hypothetical protein
1239	 70.50	0	1182053..1184503	+	816	126455840	-	BURPS1106A_A1247	-	haemagluttinin family protein
1240	 67.39	0	1184562..1185392	+	276	126456472	-	BURPS1106A_A1248	-	ompA family protein
1241	 64.14	0	1185553..1185987	-	144	126457161	-	BURPS1106A_A1249	-	hypothetical protein
1242	 66.67	0	1186164..1186277	+	37	126455602	-	BURPS1106A_A1251	-	hypothetical protein
1243	 72.97	0	1186266..1186487	-	73	126457871	-	BURPS1106A_A1250	-	hypothetical protein
1244	 69.21	0	1186551..1188005	+	484	126456498	-	BURPS1106A_A1252	-	amidase
1245	 60.87	-1	1188170..1188652	-	160	126457807	-	BURPS1106A_A1253	-	AsnC family transcriptional regulator
1246	 53.80	-2	1188666..1188836	-	56	126458501	-	BURPS1106A_A1254	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.