IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1107	 69.71	0	1067488..1068111	+	207	126457022	-	BURPS1106A_A1115	-	acetyltransferase
1108	 64.63	0	1068276..1069010	-	244	126457708	-	BURPS1106A_A1116	-	2OG-Fe(II) oxygenase family oxidoreductase
1109	 65.34	0	1069038..1070471	-	477	126457188	-	BURPS1106A_A1117	-	hypothetical protein
1110	 65.36	0	1070485..1070637	-	50	126457907	-	BURPS1106A_A1118	-	hypothetical protein
1111	 49.52	-2	1070709..1070918	-	69	126456300	-	BURPS1106A_A1119	-	hypothetical protein
1112	 65.76	0	1070880..1071320	+	146	126456385	-	BURPS1106A_A1120	-	hypothetical protein
1113	 76.30	+1	1071466..1071735	+	89	126458492	-	BURPS1106A_A1121	-	hypothetical protein
1114	 71.33	0	1071909..1072058	-	49	126455925	-	BURPS1106A_A1122	-	hypothetical protein
1115	 67.58	0	1072095..1073510	+	471	126457407	-	BURPS1106A_A1123	-	sensor histidine kinase
1116	 65.04	0	1073521..1073889	+	122	126458123	-	BURPS1106A_A1124	-	response regulator
1117	 68.30	0	1073882..1074493	+	203	126455648	-	BURPS1106A_A1125	-	CheC family phosphatase
1118	 74.69	+1	1074528..1077269	-	913	126456271	pbpC	BURPS1106A_A1126	-	penicillin-binding protein 1C
1119	 73.22	0	1077286..1083438	-	2050	126458471	-	BURPS1106A_A1127	-	alpha-2-macroglobulin family protein
1120	 66.67	0	1083435..1083722	-	95	126455756	-	BURPS1106A_A1128	-	hypothetical protein
1121	 51.85	-2	1083757..1083891	+	44	126457478	-	BURPS1106A_A1129	-	hypothetical protein
1122	 57.04	-1	1083975..1084514	+	179	126457965	-	BURPS1106A_A1131	-	hypothetical protein
1123	 57.94	-1	1084487..1084612	-	41	126458394	-	BURPS1106A_A1130	-	hypothetical protein
1124	 73.40	0	1084892..1085530	+	212	126455709	-	BURPS1106A_A1132	-	hypothetical protein
1125	 68.37	0	1085670..1086140	+	156	126458369	-	BURPS1106A_A1133	-	hypothetical protein
1126	 73.42	0	1086137..1088341	+	734	126456148	-	BURPS1106A_A1134	-	putative leucyl-tRNA synthetase
1127	 71.01	0	1088338..1089258	+	306	126455927	-	BURPS1106A_A1135	-	hypothetical protein
1128	 73.93	0	1089255..1090163	+	302	126456807	-	BURPS1106A_A1136	-	hypothetical protein
1129	 73.11	0	1090160..1091773	+	537	126457276	-	BURPS1106A_A1137	-	hypothetical protein
1130	 71.25	0	1091766..1092659	+	297	126457952	-	BURPS1106A_A1139	-	TauD/TfdA family dioxygenase
1131	 69.26	0	1092623..1093354	-	243	126458179	-	BURPS1106A_A1138	-	hypothetical protein
1132	 67.01	0	1093342..1094499	+	385	126458625	cefD	BURPS1106A_A1140	-	isopenicillin N epimerase
1133	 70.11	0	1095164..1095337	+	57	126456606	-	BURPS1106A_A1141	-	hypothetical protein
1134	 63.89	0	1095475..1097418	+	647	126455591	colA	BURPS1106A_A1142	-	collagenase
1135	 68.83	0	1097710..1098033	-	107	126457307	-	BURPS1106A_A1143	-	hypothetical protein
1136	 68.21	0	1098701..1099867	-	388	126458163	-	BURPS1106A_A1144	-	putative monooxygenase
1137	 62.44	0	1099994..1100206	-	70	126455959	-	BURPS1106A_A1145	-	hypothetical protein
1138	 78.40	+1	1100353..1100514	+	53	126457755	-	BURPS1106A_A1147	-	hypothetical protein
1139	 67.88	0	1100465..1101208	-	247	126456679	-	BURPS1106A_A1146	-	DNA-binding protein
1140	 71.26	0	1101230..1101643	+	137	126455660	-	BURPS1106A_A1148	-	hypothetical protein
1141	 64.02	0	1101580..1101768	+	62	126456371	-	BURPS1106A_A1149	-	hypothetical protein
1142	 69.84	0	1101845..1101970	+	41	126457451	-	BURPS1106A_A1150	-	hypothetical protein
1143	 70.04	0	1102035..1102598	-	187	126456622	-	BURPS1106A_A1151	-	hypothetical protein
1144	 62.54	0	1102713..1103003	+	96	126457139	-	BURPS1106A_A1152	-	hypothetical protein
1145	 64.56	0	1103072..1103308	+	78	126458508	-	BURPS1106A_A1153	-	hypothetical protein
1146	 66.67	0	1103387..1104034	-	215	126457808	-	BURPS1106A_A1154	-	LuxR family DNA-binding response regulator
1147	 77.06	+1	1104031..1104309	-	92	126458357	-	BURPS1106A_A1155	-	hypothetical protein
1148	 71.12	0	1104455..1105060	+	201	126456005	-	BURPS1106A_A1156	-	universal stress family protein
1149	 72.74	0	1105439..1106278	-	279	126455802	-	BURPS1106A_A1157	-	universal stress family protein
1150	 73.13	0	1106275..1106769	-	164	126458212	-	BURPS1106A_A1158	-	universal stress family protein
1151	 70.12	0	1106941..1107780	-	279	126457159	-	BURPS1106A_A1159	-	universal stress family protein
1152	 68.97	0	1108030..1109070	+	346	126456898	-	BURPS1106A_A1160	-	zinc-binding dehydrogenase family oxidoreductase
1153	 79.03	+1	1109180..1109446	-	88	126456252	-	BURPS1106A_A1161	-	hypothetical protein
1154	 70.43	0	1109440..1110528	+	362	126458308	-	BURPS1106A_A1162	-	hypothetical protein
1155	 72.18	0	1110583..1111923	+	446	126457457	-	BURPS1106A_A1163	-	major facilitator family transporter
1156	 73.77	0	1111884..1112249	+	121	126458371	-	BURPS1106A_A1164	-	hypothetical protein
1157	 53.33	-2	1112321..1112440	-	39	126456221	-	BURPS1106A_A1165	-	hypothetical protein
1158	 74.80	+1	1112434..1113195	+	253	126456315	-	BURPS1106A_A1166	-	short chain dehydrogenase/reductase family oxidoreductase
1159	 71.61	0	1113211..1114080	+	289	126458192	-	BURPS1106A_A1167	-	hypothetical protein
1160	 63.64	0	1114400..1114531	+	43	126455705	-	BURPS1106A_A1168	-	hypothetical protein
1161	 67.61	0	1114540..1114857	-	105	126457658	-	BURPS1106A_A1169	-	hypothetical protein
1162	 66.19	0	1114971..1116428	+	485	126458350	-	BURPS1106A_A1170	-	amino acid permease
1163	 74.01	0	1116554..1116730	+	58	126458451	-	BURPS1106A_A1171	-	hypothetical protein
1164	 63.74	0	1116869..1117039	+	56	126456128	-	BURPS1106A_A1172	-	hypothetical protein
1165	 63.49	0	1117351..1117665	+	104	126456737	-	BURPS1106A_A1174	-	H-NS histone family protein
1166	 74.73	+1	1117662..1117847	-	61	126456007	-	BURPS1106A_A1173	-	hypothetical protein
1167	 71.15	0	1118059..1119375	-	438	126457836	-	BURPS1106A_A1175	-	acyl-CoA dehydrogenase domain-containing protein
1168	 67.07	0	1119797..1120294	-	165	126457244	-	BURPS1106A_A1176	-	hypothetical protein
1169	 76.52	+1	1120293..1120424	+	43	126456604	-	BURPS1106A_A1178	-	hypothetical protein
1170	 63.30	0	1120412..1121332	-	306	126455488	-	BURPS1106A_A1177	-	hypothetical protein
1171	 71.17	0	1121473..1121694	+	73	126457264	-	BURPS1106A_A1179	-	hypothetical protein
1172	 68.68	0	1121691..1122287	+	198	126458360	-	BURPS1106A_A1180	-	hypothetical protein
1173	 71.64	0	1122392..1123798	+	468	126456073	-	BURPS1106A_A1181	-	nitrilotriacetate monooxygenase component A
1174	 71.95	0	1123940..1125265	+	441	126456984	-	BURPS1106A_A1182	-	IUNH family nucleoside hydrolase
1175	 68.92	0	1125289..1126221	-	310	126458141	rbsK	BURPS1106A_A1183	-	ribokinase
1176	 70.31	0	1126267..1127007	+	246	126457424	-	BURPS1106A_A1184	-	hypothetical protein
1177	 71.50	0	1127226..1128920	+	564	126457844	-	BURPS1106A_A1185	-	hypothetical protein
1178	 72.09	0	1128917..1131184	+	755	126456736	-	BURPS1106A_A1186	-	putative ATP-dependent helicase
1179	 72.54	0	1131219..1132511	+	430	126457979	-	BURPS1106A_A1187	-	L-2-amino-thiazoline-4-carboxylic acid hydrolase domain-containing protein
1180	 73.17	0	1132498..1132743	+	81	126457815	amaB	BURPS1106A_A1188	-	N-carbamyl-L-cysteine amidohydrolase
1181	 71.37	0	1132737..1133246	+	169	126456561	amaB	BURPS1106A_A1189	-	N-carbamyl-L-cysteine amidohydrolase
1182	 66.73	0	1133286..1134809	+	507	126455482	fliD	BURPS1106A_A1190	-	flagellar hook-associated protein
1183	 81.20	+2	1134806..1134922	+	38	126457425	-	BURPS1106A_A1191	-	hypothetical protein
1184	 71.33	0	1135206..1136105	-	299	126456556	-	BURPS1106A_A1192	-	LysR family transcriptional regulator
1185	 72.63	0	1136211..1136897	+	228	126456195	-	BURPS1106A_A1193	-	hypothetical protein
1186	 71.29	0	1136894..1137196	+	100	126457097	-	BURPS1106A_A1194	-	aldo/keto reductase family oxidoreductase
1187	 66.77	0	1137228..1138232	+	334	126457566	-	BURPS1106A_A1195	-	aldo/keto reductase family oxidoreductase
1188	 68.90	0	1138558..1139499	+	313	126456893	-	BURPS1106A_A1196	-	protein MoaF
1189	 76.02	+1	1139496..1140329	+	277	126456757	-	BURPS1106A_A1197	-	3-ketoacyl-(acyl-carrier-protein) reductase
1190	 65.38	0	1140573..1140728	-	51	126458353	-	BURPS1106A_A1198	-	hypothetical protein
1191	 71.75	0	1140793..1141500	+	235	126457205	-	BURPS1106A_A1199	-	LuxR family transcriptional regulator
1192	 71.43	0	1141544..1141690	+	48	126456511	-	BURPS1106A_A1200	-	hypothetical protein
1193	 70.92	0	1141757..1143259	+	500	126455560	ubiC	BURPS1106A_A1201	-	phenylacetaldehyde dehydrogenase
1194	 67.70	0	1143297..1144646	+	449	126457846	-	BURPS1106A_A1202	-	hypothetical protein
1195	 69.01	0	1144855..1146345	+	496	126457600	-	BURPS1106A_A1203	-	amino acid permease
1196	 75.20	+1	1146342..1146962	+	206	126458275	-	BURPS1106A_A1204	-	hypothetical protein
1197	 69.80	0	1146959..1147978	+	339	126456182	-	BURPS1106A_A1205	-	AraC family transcriptional regulator
1198	 65.59	0	1148208..1149410	+	400	126456925	-	BURPS1106A_A1206	-	outer membrane porin
1199	 67.38	0	1149713..1149991	+	92	126456110	-	BURPS1106A_A1207	-	hypothetical protein
1200	 67.24	0	1150100..1150801	-	233	126457004	-	BURPS1106A_A1208	-	LysE family translocator protein
1201	 69.55	0	1150808..1151362	+	184	126457890	-	BURPS1106A_A1209	-	acetyltransferase
1202	 70.24	0	1151496..1152557	-	353	126455603	nemA	BURPS1106A_A1210	-	N-ethylmaleimide reductase
1203	 66.34	0	1152607..1152912	-	101	126456484	-	BURPS1106A_A1211	-	ArsR family transcriptional regulator
1204	 72.87	0	1153032..1153289	-	85	126457338	-	BURPS1106A_A1212	-	hypothetical protein
1205	 74.13	+1	1153429..1153830	+	133	126455748	-	BURPS1106A_A1213	-	hypothetical protein
1206	 62.58	0	1154244..1155368	+	374	126456618	-	BURPS1106A_A1214	-	outer membrane porin
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.