IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
66	 73.54	0	53665..53853	-	62	126456522	-	BURPS1106A_A0066	-	hypothetical protein
67	 67.25	0	53838..55028	-	396	126458298	chrA	BURPS1106A_A0067	-	chromate ion transporter protein ChrA
68	 69.41	0	55025..55936	-	303	126458120	chrB	BURPS1106A_A0068	-	chrB protein
69	 69.95	0	56224..56649	-	141	126455609	-	BURPS1106A_A0069	-	hypothetical protein
70	 62.78	0	56947..57486	+	179	126456266	-	BURPS1106A_A0070	-	hypothetical protein
71	 66.67	0	57539..57838	+	99	126457832	-	BURPS1106A_A0071	-	plastocyanin/azurin family copper binding protein
72	 67.10	0	57847..58542	+	231	126458510	-	BURPS1106A_A0072	-	RNA polymerase sigma factor
73	 70.15	0	59019..65012	+	1997	126457810	uvrA	BURPS1106A_A0073	-	excinuclease ABC, A subunit
74	 57.19	-1	65434..65739	+	101	126458381	-	BURPS1106A_A0074	-	hypothetical protein
75	 60.54	-1	65894..66187	-	97	126455970	-	BURPS1106A_A0075	-	KluA
76	 62.85	0	66296..66793	-	165	126456734	-	BURPS1106A_A0076	-	hypothetical protein
77	 58.61	-1	66805..67077	+	90	126455856	-	BURPS1106A_A0077	-	hypothetical protein
78	 53.03	-2	67084..67215	-	43	126458204	-	BURPS1106A_A0078	-	hypothetical protein
79	 59.63	-1	67360..67686	-	108	126457332	-	BURPS1106A_A0079	-	H-NS histone family protein
80	 55.95	-1	67692..67859	-	55	126457643	-	BURPS1106A_A0080	-	hypothetical protein
81	 63.27	0	68210..69562	+	450	126456720	-	BURPS1106A_A0081	-	alpha-ketoglutarate permease
82	 67.03	0	69615..71546	+	643	126456247	-	BURPS1106A_A0082	-	C4-dicarboxylate transport sensor kinase
83	 66.74	0	71530..72876	+	448	126457972	-	BURPS1106A_A0083	-	C4-dicarboxylate transport transcriptional regulatory protein
84	 43.33	-2	74006..74155	+	49	126457236	-	BURPS1106A_A0084	-	hypothetical protein
85	 70.07	0	74338..74895	-	185	126457977	-	BURPS1106A_A0085	-	hypothetical protein
86	 64.53	0	74954..75187	-	77	126457400	-	BURPS1106A_A0086	-	hypothetical protein
87	 68.06	0	75164..77107	+	647	126458415	-	BURPS1106A_A0087	-	hypothetical protein
88	 69.20	0	77359..77871	+	170	126458150	-	BURPS1106A_A0088	-	AraC family transcription regulator
89	 75.44	+1	77905..78018	-	37	126456190	-	BURPS1106A_A0089	-	hypothetical protein
90	 66.67	0	78093..78209	-	38	126456875	-	BURPS1106A_A0090	-	hypothetical protein
91	 67.49	0	78243..80438	+	731	126457597	-	BURPS1106A_A0091	-	non-hemolytic phospholipase C
92	 63.09	0	80843..81205	-	120	126458296	-	BURPS1106A_A0092	-	transposase
93	 62.30	0	81301..81666	-	121	126457653	-	BURPS1106A_A0093	-	putative transposase for insertion sequence
94	 50.47	-2	82340..82975	-	211	126458337	-	BURPS1106A_A0094	-	regulatory protein
95	 51.59	-2	83684..83809	+	41	126458157	-	BURPS1106A_A0095	-	hypothetical protein
96	 57.06	-1	84481..85209	+	242	126455675	-	BURPS1106A_A0096	-	putrescine transport system permease protein PotH
97	 54.67	-2	85469..85618	-	49	126457873	-	BURPS1106A_A0097	-	hypothetical protein
98	 53.68	-2	86047..87078	+	343	126456143	-	BURPS1106A_A0098	-	ABC transport system, exported substrate-binding protein
99	 61.44	-1	87721..88026	+	101	126457035	-	BURPS1106A_A0099	-	H-NS histone family protein
100	 68.68	0	88347..91127	+	926	126457812	-	BURPS1106A_A0100	-	Rhs element Vgr protein
101	 63.68	0	91141..93381	+	746	126457559	-	BURPS1106A_A0101	-	Type V secretory pathway, adhesin AidA
102	 58.89	-1	93400..95058	+	552	126458256	-	BURPS1106A_A0102	-	hypothetical protein
103	 67.42	0	95068..95331	+	87	126456320	-	BURPS1106A_A0103	-	PAAR motif-containing protein
104	 72.63	0	95482..95766	+	94	126456243	-	BURPS1106A_A0105	-	hypothetical protein
105	 64.76	0	95746..96165	-	139	126457448	-	BURPS1106A_A0104	-	hypothetical protein
106	 67.89	0	96185..96511	-	108	126456861	-	BURPS1106A_A0106	-	thioredoxin
107	 72.22	0	96597..96812	-	71	126458274	-	BURPS1106A_A0107	-	hypothetical protein
108	 67.10	0	96983..97675	+	230	126456153	-	BURPS1106A_A0108	-	putative lipoprotein
109	 70.16	0	97714..98028	+	104	126457792	-	BURPS1106A_A0109	-	hypothetical protein
110	 64.55	0	98068..98256	-	62	126458470	-	BURPS1106A_A0110	-	hypothetical protein
111	 68.55	0	98261..99004	-	247	126458432	-	BURPS1106A_A0111	-	hypothetical protein
112	 63.24	0	99001..100575	-	524	126456528	ctaD	BURPS1106A_A0112	-	cytochrome c oxidase, subunit I
113	 68.40	0	100546..100833	+	95	126458121	-	BURPS1106A_A0113	-	hypothetical protein
114	 61.57	-1	100861..101115	-	84	126456011	-	BURPS1106A_A0114	-	hypothetical protein
115	 60.74	-1	101118..101252	-	44	126457024	-	BURPS1106A_A0115	-	hypothetical protein
116	 65.15	0	101746..102999	-	417	126457526	-	BURPS1106A_A0116	-	hypothetical protein
117	 54.81	-2	103082..103351	-	89	126455610	-	BURPS1106A_A0117	-	hypothetical protein
118	 64.55	0	103363..103551	-	62	126458117	-	BURPS1106A_A0118	-	hypothetical protein
119	 44.64	-2	104196..104363	-	55	126457116	-	BURPS1106A_A0119	-	hypothetical protein
120	 50.00	-2	104491..104616	+	41	126457003	-	BURPS1106A_A0120	-	hypothetical protein
121	 66.80	0	104775..107015	+	746	126456852	-	BURPS1106A_A0121	-	hypothetical protein
122	 66.67	0	106790..107197	+	135	126456087	-	BURPS1106A_A0122	-	haemagluttinin family protein
123	 62.33	0	107264..108715	-	483	126458397	pqaA	BURPS1106A_A0123	-	PqaA protein
124	 62.04	0	108787..109002	+	71	126457476	-	BURPS1106A_A0124	-	hypothetical protein
125	 60.90	-1	109013..109567	-	184	126457651	yfaZ	BURPS1106A_A0125	-	outer membrane protein
126	 58.43	-1	110188..110697	+	169	126457347	-	BURPS1106A_A0126	-	fimbrial protein
127	 59.89	-1	110762..111499	+	245	126456489	-	BURPS1106A_A0127	-	fimbrial assembly chaperone protein
128	 64.12	0	111612..114356	+	914	126457629	-	BURPS1106A_A0128	-	fimbrial usher protein
129	 62.30	0	114349..114921	+	190	126458042	-	BURPS1106A_A0129	-	major fimbrial subunit protein
130	 59.71	-1	114953..115642	+	229	126455750	-	BURPS1106A_A0130	-	hypothetical protein
131	 62.74	0	115693..117321	+	542	126456220	-	BURPS1106A_A0131	-	OmpA family protein
132	 64.04	0	117284..117397	+	37	126456929	-	BURPS1106A_A0132	-	hypothetical protein
133	 58.33	-1	117711..118250	+	179	126457308	-	BURPS1106A_A0133	-	hypothetical protein
134	 60.20	-1	118284..119783	+	499	126457919	-	BURPS1106A_A0134	-	hypothetical protein
135	 70.59	0	119787..119939	+	50	126455880	-	BURPS1106A_A0135	-	hypothetical protein
136	 60.04	-1	119983..120465	+	160	126456784	sciM	BURPS1106A_A0136	-	SciM protein
137	 61.14	-1	120593..121135	+	180	126456559	sciN	BURPS1106A_A0137	-	SciN protein
138	 62.03	0	121132..122490	+	452	126456681	-	BURPS1106A_A0138	-	hypothetical protein
139	 65.90	0	122487..123788	+	433	126457603	-	BURPS1106A_A0139	-	hypothetical protein
140	 67.28	0	123803..127711	+	1302	126457982	-	BURPS1106A_A0140	-	ImcF/SciS family protein
141	 80.49	+2	127742..127864	+	40	126456250	-	BURPS1106A_A0141	-	hypothetical protein
142	 66.67	0	127901..128470	+	189	126456361	-	BURPS1106A_A0142	-	hypothetical protein
143	 66.26	0	128568..131258	+	896	126457271	-	BURPS1106A_A0143	-	Rhs element Vgr protein
144	 64.13	0	131327..131602	+	91	126458070	-	BURPS1106A_A0144	-	PAAR motif-containing protein
145	 63.05	0	131615..135067	+	1150	126455803	-	BURPS1106A_A0145	-	YD repeat-/RHS repeat-containing protein
146	 59.32	-1	135974..136150	+	58	126456464	-	BURPS1106A_A0146	-	hypothetical protein
147	 58.31	-1	136351..137379	-	342	126455537	-	BURPS1106A_A0147	-	hypothetical protein
148	 67.04	0	137434..138504	-	356	126456359	-	BURPS1106A_A0148	-	ImpA-related N-terminal family protein
149	 66.95	0	138523..139572	-	349	126458527	-	BURPS1106A_A0149	-	hypothetical protein
150	 64.17	0	139569..141449	-	626	126456197	-	BURPS1106A_A0150	-	hypothetical protein
151	 63.58	0	141451..141969	-	172	126456785	-	BURPS1106A_A0151	-	hypothetical protein
152	 66.42	0	141956..142762	-	268	126457335	-	BURPS1106A_A0152	-	ImpE/SciE family protein
153	 64.30	0	142794..143849	-	351	126458215	-	BURPS1106A_A0153	-	hypothetical protein
154	 50.39	-2	143908..144036	-	42	126455511	-	BURPS1106A_A0154	-	hypothetical protein
155	 52.85	-2	144139..144261	-	40	126458525	-	BURPS1106A_A0155	-	hypothetical protein
156	 66.07	0	144237..146924	+	895	126457862	clpB	BURPS1106A_A0156	-	chaperone clpB
157	 63.04	0	146998..147135	-	45	126457183	-	BURPS1106A_A0157	-	hypothetical protein
158	 72.50	0	147187..147306	+	39	126456486	-	BURPS1106A_A0158	-	hypothetical protein
159	 63.44	0	147315..150413	-	1032	126455824	-	BURPS1106A_A0159	-	response regulator/sensor histidine kinase
160	 58.12	-1	151144..151260	-	38	126457506	-	BURPS1106A_A0160	-	hypothetical protein
161	 51.28	-2	151961..152623	-	220	126457628	-	BURPS1106A_A0161	-	LuxR family DNA-binding response regulator
162	 40.74	-2	152735..152896	-	53	126456924	-	BURPS1106A_A0162	-	hypothetical protein
163	 60.59	-1	153172..155541	-	789	126455641	-	BURPS1106A_A0163	-	fimbrial usher family protein
164	 55.51	-2	155917..156615	-	232	126457931	-	BURPS1106A_A0164	-	putative periplasmic chaperone protein
165	 40.17	-2	156831..156947	+	38	126458119	-	BURPS1106A_A0165	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.