IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1070	 71.65	0	1037465..1037785	+	106	126456101	-	BURPS1106A_A1078	-	D-galactarate dehydratase/altronate hydrolase
1071	 70.07	0	1037820..1039142	+	440	126457038	-	BURPS1106A_A1079	-	D-galactarate dehydratase/altronate hydrolase
1072	 73.45	0	1039414..1040253	+	279	126457121	-	BURPS1106A_A1080	-	hydrolase
1073	 74.80	+1	1040250..1040372	+	40	126457999	-	BURPS1106A_A1081	-	hypothetical protein
1074	 70.56	0	1040393..1041136	+	247	126455738	-	BURPS1106A_A1082	-	short chain dehydrogenase/reductase family oxidoreductase
1075	 69.16	0	1041212..1042054	+	280	126456513	-	BURPS1106A_A1083	-	fumarylacetoacetate hydrolase family protein
1076	 75.47	+1	1042051..1042209	+	52	126455820	-	BURPS1106A_A1084	-	hypothetical protein
1077	 67.95	0	1042206..1042982	+	258	126457923	-	BURPS1106A_A1085	-	short chain dehydrogenase
1078	 65.42	0	1043036..1043356	+	106	126457229	-	BURPS1106A_A1086	-	hypothetical protein
1079	 67.51	0	1043768..1044004	-	78	126457877	-	BURPS1106A_A1087	-	hypothetical protein
1080	 52.63	-2	1044183..1044353	+	56	126457186	-	BURPS1106A_A1088	-	hypothetical protein
1081	 52.97	-2	1044927..1045145	-	72	126456942	-	BURPS1106A_A1089	-	hypothetical protein
1082	 67.88	0	1045325..1050334	+	1669	126456236	-	BURPS1106A_A1090	-	haemagluttinin motif-containing protein
1083	 68.89	0	1050339..1050473	+	44	126455801	-	BURPS1106A_A1091	-	hypothetical protein
1084	 66.24	0	1050832..1051068	-	78	126457638	-	BURPS1106A_A1092	-	hypothetical protein
1085	 64.33	0	1051227..1051568	-	113	126455727	-	BURPS1106A_A1093	-	H-NS histone family protein
1086	 69.40	0	1051565..1051747	-	60	126457860	-	BURPS1106A_A1094	-	hypothetical protein
1087	 67.61	0	1051759..1052499	-	246	126456468	-	BURPS1106A_A1095	-	IclR family transcriptional regulator
1088	 69.68	0	1052614..1053078	-	154	126455735	-	BURPS1106A_A1096	-	hypothetical protein
1089	 67.16	0	1053094..1054314	-	406	126458311	-	BURPS1106A_A1097	-	cyclic diguanylate phosphodiesterase
1090	 41.88	-2	1054280..1054396	-	38	126457474	-	BURPS1106A_A1098	-	hypothetical protein
1091	 47.37	-2	1054692..1054862	-	56	126457964	-	BURPS1106A_A1099	-	hypothetical protein
1092	 67.97	0	1055191..1055805	-	204	126457050	-	BURPS1106A_A1100	-	TetR family transcriptional regulator
1093	 64.16	0	1055920..1056357	+	145	126456595	-	BURPS1106A_A1101	-	hypothetical protein
1094	 65.44	0	1056506..1057648	+	380	126455747	-	BURPS1106A_A1102	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
1095	 75.10	+1	1057752..1058012	-	86	126457513	-	BURPS1106A_A1103	-	hypothetical protein
1096	 66.99	0	1058137..1058757	+	206	126458423	hlyIII	BURPS1106A_A1104	-	hemolysin III
1097	 69.69	0	1058815..1059642	-	275	126456108	-	BURPS1106A_A1105	-	hypothetical protein
1098	 68.36	0	1059838..1061904	-	688	126456988	-	BURPS1106A_A1106	-	diguanylate cyclase/cyclic diguanylate phosphodiesterase
1099	 76.81	+1	1062053..1062259	+	68	126456095	-	BURPS1106A_A1108	-	hypothetical protein
1100	 62.83	0	1062231..1062725	-	164	126458014	-	BURPS1106A_A1107	-	AsnC family transcriptional regulator
1101	 69.39	0	1062823..1062969	-	48	126456326	-	BURPS1106A_A1109	-	hypothetical protein
1102	 65.15	0	1063031..1064416	+	461	126457440	aroP	BURPS1106A_A1110	-	aromatic amino acid transport protein AroP
1103	 67.66	0	1064448..1065650	+	400	126457359	tyrB	BURPS1106A_A1111	-	aromatic amino acid aminotransferase
1104	 67.95	0	1065982..1066371	+	129	126458240	-	BURPS1106A_A1112	-	hypothetical protein
1105	 69.64	0	1066459..1066626	-	55	126455718	-	BURPS1106A_A1113	-	hypothetical protein
1106	 69.84	0	1067177..1067428	+	83	126456830	-	BURPS1106A_A1114	-	hypothetical protein
1107	 69.71	0	1067488..1068111	+	207	126457022	-	BURPS1106A_A1115	-	acetyltransferase
1108	 64.63	0	1068276..1069010	-	244	126457708	-	BURPS1106A_A1116	-	2OG-Fe(II) oxygenase family oxidoreductase
1109	 65.34	0	1069038..1070471	-	477	126457188	-	BURPS1106A_A1117	-	hypothetical protein
1110	 65.36	0	1070485..1070637	-	50	126457907	-	BURPS1106A_A1118	-	hypothetical protein
1111	 49.52	-2	1070709..1070918	-	69	126456300	-	BURPS1106A_A1119	-	hypothetical protein
1112	 65.76	0	1070880..1071320	+	146	126456385	-	BURPS1106A_A1120	-	hypothetical protein
1113	 76.30	+1	1071466..1071735	+	89	126458492	-	BURPS1106A_A1121	-	hypothetical protein
1114	 71.33	0	1071909..1072058	-	49	126455925	-	BURPS1106A_A1122	-	hypothetical protein
1115	 67.58	0	1072095..1073510	+	471	126457407	-	BURPS1106A_A1123	-	sensor histidine kinase
1116	 65.04	0	1073521..1073889	+	122	126458123	-	BURPS1106A_A1124	-	response regulator
1117	 68.30	0	1073882..1074493	+	203	126455648	-	BURPS1106A_A1125	-	CheC family phosphatase
1118	 74.69	+1	1074528..1077269	-	913	126456271	pbpC	BURPS1106A_A1126	-	penicillin-binding protein 1C
1119	 73.22	0	1077286..1083438	-	2050	126458471	-	BURPS1106A_A1127	-	alpha-2-macroglobulin family protein
1120	 66.67	0	1083435..1083722	-	95	126455756	-	BURPS1106A_A1128	-	hypothetical protein
1121	 51.85	-2	1083757..1083891	+	44	126457478	-	BURPS1106A_A1129	-	hypothetical protein
1122	 57.04	-1	1083975..1084514	+	179	126457965	-	BURPS1106A_A1131	-	hypothetical protein
1123	 57.94	-1	1084487..1084612	-	41	126458394	-	BURPS1106A_A1130	-	hypothetical protein
1124	 73.40	0	1084892..1085530	+	212	126455709	-	BURPS1106A_A1132	-	hypothetical protein
1125	 68.37	0	1085670..1086140	+	156	126458369	-	BURPS1106A_A1133	-	hypothetical protein
1126	 73.42	0	1086137..1088341	+	734	126456148	-	BURPS1106A_A1134	-	putative leucyl-tRNA synthetase
1127	 71.01	0	1088338..1089258	+	306	126455927	-	BURPS1106A_A1135	-	hypothetical protein
1128	 73.93	0	1089255..1090163	+	302	126456807	-	BURPS1106A_A1136	-	hypothetical protein
1129	 73.11	0	1090160..1091773	+	537	126457276	-	BURPS1106A_A1137	-	hypothetical protein
1130	 71.25	0	1091766..1092659	+	297	126457952	-	BURPS1106A_A1139	-	TauD/TfdA family dioxygenase
1131	 69.26	0	1092623..1093354	-	243	126458179	-	BURPS1106A_A1138	-	hypothetical protein
1132	 67.01	0	1093342..1094499	+	385	126458625	cefD	BURPS1106A_A1140	-	isopenicillin N epimerase
1133	 70.11	0	1095164..1095337	+	57	126456606	-	BURPS1106A_A1141	-	hypothetical protein
1134	 63.89	0	1095475..1097418	+	647	126455591	colA	BURPS1106A_A1142	-	collagenase
1135	 68.83	0	1097710..1098033	-	107	126457307	-	BURPS1106A_A1143	-	hypothetical protein
1136	 68.21	0	1098701..1099867	-	388	126458163	-	BURPS1106A_A1144	-	putative monooxygenase
1137	 62.44	0	1099994..1100206	-	70	126455959	-	BURPS1106A_A1145	-	hypothetical protein
1138	 78.40	+1	1100353..1100514	+	53	126457755	-	BURPS1106A_A1147	-	hypothetical protein
1139	 67.88	0	1100465..1101208	-	247	126456679	-	BURPS1106A_A1146	-	DNA-binding protein
1140	 71.26	0	1101230..1101643	+	137	126455660	-	BURPS1106A_A1148	-	hypothetical protein
1141	 64.02	0	1101580..1101768	+	62	126456371	-	BURPS1106A_A1149	-	hypothetical protein
1142	 69.84	0	1101845..1101970	+	41	126457451	-	BURPS1106A_A1150	-	hypothetical protein
1143	 70.04	0	1102035..1102598	-	187	126456622	-	BURPS1106A_A1151	-	hypothetical protein
1144	 62.54	0	1102713..1103003	+	96	126457139	-	BURPS1106A_A1152	-	hypothetical protein
1145	 64.56	0	1103072..1103308	+	78	126458508	-	BURPS1106A_A1153	-	hypothetical protein
1146	 66.67	0	1103387..1104034	-	215	126457808	-	BURPS1106A_A1154	-	LuxR family DNA-binding response regulator
1147	 77.06	+1	1104031..1104309	-	92	126458357	-	BURPS1106A_A1155	-	hypothetical protein
1148	 71.12	0	1104455..1105060	+	201	126456005	-	BURPS1106A_A1156	-	universal stress family protein
1149	 72.74	0	1105439..1106278	-	279	126455802	-	BURPS1106A_A1157	-	universal stress family protein
1150	 73.13	0	1106275..1106769	-	164	126458212	-	BURPS1106A_A1158	-	universal stress family protein
1151	 70.12	0	1106941..1107780	-	279	126457159	-	BURPS1106A_A1159	-	universal stress family protein
1152	 68.97	0	1108030..1109070	+	346	126456898	-	BURPS1106A_A1160	-	zinc-binding dehydrogenase family oxidoreductase
1153	 79.03	+1	1109180..1109446	-	88	126456252	-	BURPS1106A_A1161	-	hypothetical protein
1154	 70.43	0	1109440..1110528	+	362	126458308	-	BURPS1106A_A1162	-	hypothetical protein
1155	 72.18	0	1110583..1111923	+	446	126457457	-	BURPS1106A_A1163	-	major facilitator family transporter
1156	 73.77	0	1111884..1112249	+	121	126458371	-	BURPS1106A_A1164	-	hypothetical protein
1157	 53.33	-2	1112321..1112440	-	39	126456221	-	BURPS1106A_A1165	-	hypothetical protein
1158	 74.80	+1	1112434..1113195	+	253	126456315	-	BURPS1106A_A1166	-	short chain dehydrogenase/reductase family oxidoreductase
1159	 71.61	0	1113211..1114080	+	289	126458192	-	BURPS1106A_A1167	-	hypothetical protein
1160	 63.64	0	1114400..1114531	+	43	126455705	-	BURPS1106A_A1168	-	hypothetical protein
1161	 67.61	0	1114540..1114857	-	105	126457658	-	BURPS1106A_A1169	-	hypothetical protein
1162	 66.19	0	1114971..1116428	+	485	126458350	-	BURPS1106A_A1170	-	amino acid permease
1163	 74.01	0	1116554..1116730	+	58	126458451	-	BURPS1106A_A1171	-	hypothetical protein
1164	 63.74	0	1116869..1117039	+	56	126456128	-	BURPS1106A_A1172	-	hypothetical protein
1165	 63.49	0	1117351..1117665	+	104	126456737	-	BURPS1106A_A1174	-	H-NS histone family protein
1166	 74.73	+1	1117662..1117847	-	61	126456007	-	BURPS1106A_A1173	-	hypothetical protein
1167	 71.15	0	1118059..1119375	-	438	126457836	-	BURPS1106A_A1175	-	acyl-CoA dehydrogenase domain-containing protein
1168	 67.07	0	1119797..1120294	-	165	126457244	-	BURPS1106A_A1176	-	hypothetical protein
1169	 76.52	+1	1120293..1120424	+	43	126456604	-	BURPS1106A_A1178	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.