IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1006	 62.94	0	981584..982816	-	410	126458624	-	BURPS1106A_A1013	-	putative secretory lipase
1007	 48.48	-2	982926..983057	+	43	126457895	-	BURPS1106A_A1015	-	hypothetical protein
1008	 44.44	-2	983037..983189	-	50	126457227	-	BURPS1106A_A1014	-	hypothetical protein
1009	 65.92	0	983357..984433	+	358	126455804	-	BURPS1106A_A1016	-	outer membrane porin
1010	 67.74	0	985052..985423	-	123	126456496	-	BURPS1106A_A1017	-	hypothetical protein
1011	 70.09	0	985420..985536	-	38	126456401	-	BURPS1106A_A1018	-	hypothetical protein
1012	 69.04	0	985590..986390	-	266	126457752	-	BURPS1106A_A1019	-	LuxR family transcriptional regulator
1013	 68.44	0	986512..987924	+	470	126458263	-	BURPS1106A_A1020	-	amino acid permease
1014	 74.45	+1	987966..989096	+	376	126455541	-	BURPS1106A_A1022	-	putative D-aminopeptidase
1015	 69.03	0	989087..990733	-	548	126456203	-	BURPS1106A_A1021	-	histidine acid phosphatase family protein
1016	 70.32	0	990908..991126	-	72	126456470	-	BURPS1106A_A1023	-	hypothetical protein
1017	 70.46	0	991253..993490	-	745	126455762	-	BURPS1106A_A1024	-	putative fusaric acid resistance protein
1018	 68.15	0	993701..994711	+	336	126456629	-	BURPS1106A_A1025	-	LysR family transcriptional regulator
1019	 68.38	0	994738..994971	+	77	126457641	-	BURPS1106A_A1026	-	hypothetical protein
1020	 69.64	0	995244..995546	-	100	126458370	-	BURPS1106A_A1027	-	hypothetical protein
1021	 64.96	0	995614..995847	-	77	126456056	-	BURPS1106A_A1028	-	hypothetical protein
1022	 65.54	0	995865..997019	+	384	126455536	-	BURPS1106A_A1029	-	outer membrane porin
1023	 68.82	0	997133..997597	+	154	126456662	-	BURPS1106A_A1030	-	glyoxalase family protein
1024	 60.05	-1	997566..997988	+	140	126457403	-	BURPS1106A_A1031	-	hypothetical protein
1025	 66.59	0	998084..999409	+	441	126457523	codB	BURPS1106A_A1032	-	cytosine permease
1026	 67.32	0	999414..1000646	+	410	126458435	-	BURPS1106A_A1033	-	putative purine catabolism transcriptional regulator
1027	 67.94	0	1000646..1001902	+	418	126455575	codA	BURPS1106A_A1034	-	cytosine deaminase
1028	 70.70	0	1001962..1003299	-	445	126456375	-	BURPS1106A_A1035	-	major facilitator family transporter
1029	 67.95	0	1003495..1004427	-	310	126457122	-	BURPS1106A_A1036	-	hypothetical protein
1030	 70.88	0	1004469..1005323	-	284	126457822	-	BURPS1106A_A1037	-	short chain dehydrogenase
1031	 71.13	0	1005381..1006097	-	238	126457414	-	BURPS1106A_A1038	-	GntR family transcriptional regulator
1032	 64.05	0	1006147..1006452	-	101	126456764	-	BURPS1106A_A1039	-	hypothetical protein
1033	 74.39	+1	1006451..1007797	+	448	126456079	-	BURPS1106A_A1040	-	voltage gated chloride channel family protein
1034	 61.11	-1	1008121..1008444	-	107	126458591	-	BURPS1106A_A1041	-	hypothetical protein
1035	 70.76	0	1008763..1010373	-	536	126457905	-	BURPS1106A_A1042	-	di-haem cytochrome c peroxidase family protein
1036	 66.85	0	1010377..1012044	-	555	126457215	-	BURPS1106A_A1043	-	phosphoesterase family protein
1037	 75.23	+1	1012600..1013580	-	326	126456711	-	BURPS1106A_A1044	-	putative acetylesterase
1038	 76.23	+1	1013596..1013961	+	121	126458587	-	BURPS1106A_A1046	-	hypothetical protein
1039	 73.33	0	1013951..1014115	-	54	126456652	-	BURPS1106A_A1045	-	hypothetical protein
1040	 68.54	0	1014122..1014760	-	212	126457704	-	BURPS1106A_A1047	-	LuxR family DNA-binding response regulator
1041	 70.89	0	1014757..1014993	-	78	126456323	-	BURPS1106A_A1048	-	hypothetical protein
1042	 68.93	0	1015131..1015661	-	176	126455768	-	BURPS1106A_A1049	-	LigA
1043	 68.63	0	1015631..1015783	-	50	126457715	-	BURPS1106A_A1050	-	hypothetical protein
1044	 63.33	0	1015828..1015947	+	39	126457228	-	BURPS1106A_A1051	-	hypothetical protein
1045	 67.57	0	1015950..1016171	+	73	126458348	-	BURPS1106A_A1052	-	hypothetical protein
1046	 75.19	+1	1016138..1016536	+	132	126457632	-	BURPS1106A_A1053	-	hypothetical protein
1047	 69.17	0	1016559..1016678	-	39	126458329	-	BURPS1106A_A1054	-	hypothetical protein
1048	 71.01	0	1016761..1017243	+	160	126457652	-	BURPS1106A_A1055	-	MarR family transcriptional regulator
1049	 71.03	0	1017433..1018440	-	335	126456505	-	BURPS1106A_A1056	-	transcriptional regulator
1050	 68.52	0	1018464..1018841	+	125	126455758	-	BURPS1106A_A1057	-	L-arabinose transport system permease protein AraH
1051	 73.61	0	1019082..1020017	+	311	126456096	-	BURPS1106A_A1058	-	senescence marker protein-30 family protein
1052	 64.81	0	1020014..1020877	+	287	126457084	-	BURPS1106A_A1059	-	hypothetical protein
1053	 68.82	0	1020712..1021083	+	123	126457524	-	BURPS1106A_A1060	-	hypothetical protein
1054	 66.88	0	1021169..1021633	-	154	126456907	-	BURPS1106A_A1061	-	hypothetical protein
1055	 70.54	0	1021720..1021977	+	85	126457821	-	BURPS1106A_A1062	-	hypothetical protein
1056	 76.30	+1	1021956..1022090	+	44	126458485	-	BURPS1106A_A1063	-	hypothetical protein
1057	 64.04	0	1022849..1022962	+	37	126455668	-	BURPS1106A_A1065	-	hypothetical protein
1058	 73.86	0	1023015..1023278	-	87	126456578	-	BURPS1106A_A1066	-	hypothetical protein
1059	 66.30	0	1023404..1024231	+	275	126457142	-	BURPS1106A_A1067	-	p-hydroxycinnamoyl CoA hydratase/lyase
1060	 74.58	+1	1024281..1025846	+	521	126458039	vdh	BURPS1106A_A1068	-	vanillin dehydrogenase
1061	 72.59	0	1025864..1027720	+	618	126458476	fcs	BURPS1106A_A1069	-	feruloyl-CoA synthase
1062	 73.32	0	1027895..1029187	+	430	126456198	-	BURPS1106A_A1070	-	putative 3-hydroxyphenylpropionic transporter MhpT
1063	 61.82	-1	1029512..1029676	+	54	126456741	-	BURPS1106A_A1071	-	hypothetical protein
1064	 71.40	0	1029673..1030812	+	379	126457262	-	BURPS1106A_A1072	-	outer membrane porin
1065	 71.36	0	1030885..1032609	+	574	126457733	-	BURPS1106A_A1073	-	tannase/feruloyl esterase family protein
1066	 70.91	0	1032874..1033698	-	274	126458037	-	BURPS1106A_A1074	-	IclR family transcriptional regulator
1067	 68.34	0	1033887..1034900	+	337	126455764	-	BURPS1106A_A1075	-	carbohydrate ABC transporter periplasmic sugar-binding protein
1068	 73.47	0	1034897..1036453	+	518	126456598	-	BURPS1106A_A1076	-	carbohydrate ABC transporter ATP-binding protein
1069	 70.08	0	1036443..1037468	+	341	126458424	-	BURPS1106A_A1077	-	carbohydrate ABC transporter permease
1070	 71.65	0	1037465..1037785	+	106	126456101	-	BURPS1106A_A1078	-	D-galactarate dehydratase/altronate hydrolase
1071	 70.07	0	1037820..1039142	+	440	126457038	-	BURPS1106A_A1079	-	D-galactarate dehydratase/altronate hydrolase
1072	 73.45	0	1039414..1040253	+	279	126457121	-	BURPS1106A_A1080	-	hydrolase
1073	 74.80	+1	1040250..1040372	+	40	126457999	-	BURPS1106A_A1081	-	hypothetical protein
1074	 70.56	0	1040393..1041136	+	247	126455738	-	BURPS1106A_A1082	-	short chain dehydrogenase/reductase family oxidoreductase
1075	 69.16	0	1041212..1042054	+	280	126456513	-	BURPS1106A_A1083	-	fumarylacetoacetate hydrolase family protein
1076	 75.47	+1	1042051..1042209	+	52	126455820	-	BURPS1106A_A1084	-	hypothetical protein
1077	 67.95	0	1042206..1042982	+	258	126457923	-	BURPS1106A_A1085	-	short chain dehydrogenase
1078	 65.42	0	1043036..1043356	+	106	126457229	-	BURPS1106A_A1086	-	hypothetical protein
1079	 67.51	0	1043768..1044004	-	78	126457877	-	BURPS1106A_A1087	-	hypothetical protein
1080	 52.63	-2	1044183..1044353	+	56	126457186	-	BURPS1106A_A1088	-	hypothetical protein
1081	 52.97	-2	1044927..1045145	-	72	126456942	-	BURPS1106A_A1089	-	hypothetical protein
1082	 67.88	0	1045325..1050334	+	1669	126456236	-	BURPS1106A_A1090	-	haemagluttinin motif-containing protein
1083	 68.89	0	1050339..1050473	+	44	126455801	-	BURPS1106A_A1091	-	hypothetical protein
1084	 66.24	0	1050832..1051068	-	78	126457638	-	BURPS1106A_A1092	-	hypothetical protein
1085	 64.33	0	1051227..1051568	-	113	126455727	-	BURPS1106A_A1093	-	H-NS histone family protein
1086	 69.40	0	1051565..1051747	-	60	126457860	-	BURPS1106A_A1094	-	hypothetical protein
1087	 67.61	0	1051759..1052499	-	246	126456468	-	BURPS1106A_A1095	-	IclR family transcriptional regulator
1088	 69.68	0	1052614..1053078	-	154	126455735	-	BURPS1106A_A1096	-	hypothetical protein
1089	 67.16	0	1053094..1054314	-	406	126458311	-	BURPS1106A_A1097	-	cyclic diguanylate phosphodiesterase
1090	 41.88	-2	1054280..1054396	-	38	126457474	-	BURPS1106A_A1098	-	hypothetical protein
1091	 47.37	-2	1054692..1054862	-	56	126457964	-	BURPS1106A_A1099	-	hypothetical protein
1092	 67.97	0	1055191..1055805	-	204	126457050	-	BURPS1106A_A1100	-	TetR family transcriptional regulator
1093	 64.16	0	1055920..1056357	+	145	126456595	-	BURPS1106A_A1101	-	hypothetical protein
1094	 65.44	0	1056506..1057648	+	380	126455747	-	BURPS1106A_A1102	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
1095	 75.10	+1	1057752..1058012	-	86	126457513	-	BURPS1106A_A1103	-	hypothetical protein
1096	 66.99	0	1058137..1058757	+	206	126458423	hlyIII	BURPS1106A_A1104	-	hemolysin III
1097	 69.69	0	1058815..1059642	-	275	126456108	-	BURPS1106A_A1105	-	hypothetical protein
1098	 68.36	0	1059838..1061904	-	688	126456988	-	BURPS1106A_A1106	-	diguanylate cyclase/cyclic diguanylate phosphodiesterase
1099	 76.81	+1	1062053..1062259	+	68	126456095	-	BURPS1106A_A1108	-	hypothetical protein
1100	 62.83	0	1062231..1062725	-	164	126458014	-	BURPS1106A_A1107	-	AsnC family transcriptional regulator
1101	 69.39	0	1062823..1062969	-	48	126456326	-	BURPS1106A_A1109	-	hypothetical protein
1102	 65.15	0	1063031..1064416	+	461	126457440	aroP	BURPS1106A_A1110	-	aromatic amino acid transport protein AroP
1103	 67.66	0	1064448..1065650	+	400	126457359	tyrB	BURPS1106A_A1111	-	aromatic amino acid aminotransferase
1104	 67.95	0	1065982..1066371	+	129	126458240	-	BURPS1106A_A1112	-	hypothetical protein
1105	 69.64	0	1066459..1066626	-	55	126455718	-	BURPS1106A_A1113	-	hypothetical protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.