IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
919	 63.80	0	906842..907120	-	92	126453217	rpsT	BURPS1106A_0923	-	30S ribosomal protein S20
920	 66.39	0	907297..909075	+	592	126454372	mviN	BURPS1106A_0924	-	integral membrane protein MviN
921	 68.21	0	909085..909927	+	280	126454496	-	BURPS1106A_0925	-	hypothetical protein
922	 68.54	0	910196..911155	-	319	126451637	-	BURPS1106A_0926	-	short chain dehydrogenase/reductase family oxidoreductase
923	 65.31	0	911152..911814	-	220	126452690	adk	BURPS1106A_0927	-	adenylate kinase
924	 70.45	0	912023..912814	-	263	126453920	kdsB	BURPS1106A_0928	-	3-deoxy-manno-octulosonate cytidylyltransferase
925	 67.63	0	912988..913194	-	68	126454062	-	BURPS1106A_0929	-	hypothetical protein
926	 73.65	+1	913175..914305	-	376	126453033	lpxK	BURPS1106A_0930	-	tetraacyldisaccharide 4'-kinase
927	 64.07	0	914436..914666	-	76	126451813	-	BURPS1106A_0931	-	hypothetical protein
928	 73.90	+1	914661..916043	+	460	126455268	xseA	BURPS1106A_0932	-	exodeoxyribonuclease VII large subunit
929	 62.18	-1	916240..916818	+	192	126454128	sodB	BURPS1106A_0933	-	superoxide dismutase (Fe)
930	 66.18	0	916983..917189	+	68	126453553	-	BURPS1106A_0934	-	hypothetical protein
931	 66.91	0	917307..918521	+	404	126452364	-	BURPS1106A_0935	-	hypothetical protein
932	 74.03	+1	918620..918877	+	85	126451801	-	BURPS1106A_0936	-	hypothetical protein
933	 74.54	+1	919263..920468	-	401	126454677	-	BURPS1106A_0937	-	chromate transporter
934	 70.24	0	920702..921457	-	251	126453994	-	BURPS1106A_0938	-	cyclic nucleotide-binding protein
935	 70.27	0	921542..922069	+	175	126452824	-	BURPS1106A_0939	-	hypothetical protein
936	 73.80	+1	922085..923107	+	340	126455021	panE	BURPS1106A_0940	-	2-dehydropantoate 2-reductase
937	 64.39	0	923260..923391	-	43	126452751	-	BURPS1106A_0941	-	hypothetical protein
938	 72.44	0	923647..924252	+	201	126452729	-	BURPS1106A_0942	-	hypothetical protein
939	 69.50	0	924363..925631	-	422	126453626	-	BURPS1106A_0943	-	cyclic diguanylate phosphodiesterase
940	 77.04	+1	925692..925826	+	44	126454561	-	BURPS1106A_0944	-	hypothetical protein
941	 67.15	0	926289..927728	-	479	126452379	-	BURPS1106A_0945	-	DHA2 family drug:H+ antiporter-1
942	 73.51	+1	928025..928360	+	111	126453301	-	BURPS1106A_0947	-	hypothetical protein
943	 75.83	+1	928333..929685	-	450	126452427	-	BURPS1106A_0946	-	citrate synthase family protein
944	 76.39	+1	929826..929969	-	47	126454029	-	BURPS1106A_0948	-	hypothetical protein
945	 72.81	0	929977..930432	+	151	126454629	-	BURPS1106A_0950	-	hypothetical protein
946	 65.46	0	930402..931148	-	248	126451927	-	BURPS1106A_0949	-	GntR family transcriptional regulator
947	 69.03	0	931317..932162	+	281	126452797	-	BURPS1106A_0952	-	aldo/keto reductase family oxidoreductase
948	 71.35	0	932122..932505	-	127	126453897	-	BURPS1106A_0951	-	hypothetical protein
949	 71.19	0	932502..933164	-	220	126452149	-	BURPS1106A_0953	-	hypothetical protein
950	 71.74	0	933122..935347	-	741	126454432	-	BURPS1106A_0954	-	hypothetical protein
951	 76.59	+1	935320..935571	+	83	126453124	-	BURPS1106A_0955	-	hypothetical protein
952	 66.08	0	935691..938096	-	801	126454785	fusA	BURPS1106A_0956	-	elongation factor G
953	 67.06	0	938103..938612	-	169	126453857	-	BURPS1106A_0957	-	hypothetical protein
954	 73.23	+1	939285..939863	-	192	126453501	-	BURPS1106A_0958	-	RNA pseudouridine synthase family protein
955	 62.06	-1	940131..941390	+	419	126453346	icd	BURPS1106A_0960	-	isocitrate dehydrogenase
956	 64.48	0	941363..941545	-	60	126452842	-	BURPS1106A_0959	-	hypothetical protein
957	 70.95	0	941558..943168	+	536	126453660	-	BURPS1106A_0961	-	multicopper oxidase family protein
958	 53.43	-2	943298..943501	-	67	126453970	-	BURPS1106A_0962	-	cold shock protein
959	 56.51	-2	944034..944348	+	104	126455350	clpS	BURPS1106A_0963	-	ATP-dependent Clp protease adaptor protein ClpS
960	 64.93	0	944345..946645	+	766	126452761	clpA	BURPS1106A_0964	-	ATP-dependent Clp protease ATP-binding subunit ClpA
961	 66.74	0	946745..948121	+	458	126453093	-	BURPS1106A_0965	-	amino acid permease
962	 71.77	0	948194..948937	+	247	126453919	-	BURPS1106A_0966	-	hypothetical protein
963	 65.64	0	949102..949884	+	260	126454774	-	BURPS1106A_0967	-	hypothetical protein
964	 68.90	0	949973..950419	-	148	126451592	dut	BURPS1106A_0968	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
965	 69.47	0	950483..951694	-	403	126452551	coaBC	BURPS1106A_0969	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
966	 66.47	0	951756..952256	-	166	126453443	lspA	BURPS1106A_0970	-	signal peptidase II
967	 66.77	0	952256..955093	-	945	126452873	ileS	BURPS1106A_0971	-	isoleucyl-tRNA synthetase
968	 71.30	0	955205..956197	-	330	126452288	bimA	BURPS1106A_0972	-	bifunctional riboflavin kinase/FMN adenylyltransferase
969	 69.53	0	956322..956984	+	220	126454710	purN	BURPS1106A_0973	-	phosphoribosylglycinamide formyltransferase
970	 70.70	0	956981..958243	+	420	126454034	sun	BURPS1106A_0974	-	rRNA small subunit methyltransferase B
971	 70.66	0	958255..959607	+	450	126452978	-	BURPS1106A_0975	-	small conductance mechanosensitive ion channel (MscS) family protein
972	 63.83	0	959804..961000	+	398	126452903	-	BURPS1106A_0976	-	fatty acid desaturase family protein
973	 63.77	0	961037..961174	-	45	126451803	-	BURPS1106A_0977	-	hypothetical protein
974	 67.55	0	961169..962305	+	378	126451762	nadA	BURPS1106A_0978	-	quinolinate synthetase
975	 70.06	0	962302..963186	+	294	126454043	nadC	BURPS1106A_0979	-	nicotinate-nucleotide pyrophosphorylase
976	 75.80	+1	963188..963406	+	72	126454503	-	BURPS1106A_0981	-	hypothetical protein
977	 67.54	0	963378..965090	-	570	126454473	nadB	BURPS1106A_0980	-	L-aspartate oxidase
978	 53.57	-2	965147..965314	-	55	126453616	rpmG	BURPS1106A_0982	-	50S ribosomal protein L33
979	 60.68	-1	965332..965565	-	77	126452424	rpmB	BURPS1106A_0983	-	50S ribosomal protein L28
980	 74.07	+1	965859..966695	-	278	126455030	radC	BURPS1106A_0984	-	DNA repair protein RadC
981	 65.13	0	966834..967289	+	151	126455033	fkpB	BURPS1106A_0985	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
982	 68.20	0	967292..968272	+	326	126454143	ispH	BURPS1106A_0986	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
983	 62.50	0	968418..969521	+	367	126452273	-	BURPS1106A_0987	-	transposase, IS4
984	 73.21	+1	969918..970406	+	162	126451663	-	BURPS1106A_0988	-	hypothetical protein
985	 64.77	0	970629..971579	+	316	126453328	-	BURPS1106A_0989	-	hydrophobic amino acid ABC transporter permease/ATP-binding protein
986	 66.24	0	971590..972759	+	389	126454057	-	BURPS1106A_0990	-	hydrophobic amino acid ABC transporter permease/ATP-binding protein
987	 64.73	0	972822..973595	+	257	126453383	-	BURPS1106A_0991	-	hydrophobic amino acid ABC transporter ATP-binding protein
988	 64.71	0	973595..974311	+	238	126452269	-	BURPS1106A_0992	-	hydrophobic amino acid ABC transporter ATP-binding protein
989	 69.60	0	974356..974628	+	90	126452244	-	BURPS1106A_0993	-	hypothetical protein
990	 65.17	0	974625..975293	+	222	126454715	-	BURPS1106A_0994	-	hypothetical protein
991	 72.61	0	975466..975936	-	156	126453563	-	BURPS1106A_0995	-	putative acetyltransferase
992	 66.50	0	975941..977125	-	394	126452494	argD	BURPS1106A_0996	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
993	 67.05	0	977402..978433	-	343	126454941	-	BURPS1106A_0997	-	CDP-6-deoxy-delta-3,4-glucoseen reductase
994	 71.94	0	978462..979541	+	359	126452148	-	BURPS1106A_0999	-	NAD-dependent epimerase/dehydratase family protein
995	 58.85	-1	979534..979725	-	63	126453803	-	BURPS1106A_0998	-	hypothetical protein
996	 69.16	0	979839..980561	-	240	126454957	-	BURPS1106A_1000	-	RNA pseudouridine synthase family protein
997	 70.16	0	980703..981074	+	123	126454378	-	BURPS1106A_1001	-	putative copper resistance protein CopC
998	 68.64	0	981086..982048	-	320	126453248	-	BURPS1106A_1002	-	LysR family transcriptional regulator
999	 72.69	0	982250..983146	-	298	126452612	-	BURPS1106A_1003	-	LysR family transcriptional regulator
1000	 72.46	0	983268..984164	+	298	126451500	-	BURPS1106A_1004	-	alpha/beta fold family hydrolase
1001	 69.71	0	984418..985107	-	229	126454115	-	BURPS1106A_1005	-	MOSC domain-containing protein
1002	 70.35	0	985122..986018	-	298	126454975	-	BURPS1106A_1006	-	putative dihydrodipicolinate synthase
1003	 68.45	0	986100..986882	-	260	126452376	-	BURPS1106A_1007	-	hypothetical protein
1004	 63.65	0	987014..987577	+	187	126453277	-	BURPS1106A_1008	-	DNA-binding protein
1005	 70.65	0	987676..987876	+	66	126453597	-	BURPS1106A_1009	-	hypothetical protein
1006	 69.49	0	988363..988539	-	58	126452127	-	BURPS1106A_1011	-	hypothetical protein
1007	 64.54	0	988698..989639	-	313	126453673	cysB	BURPS1106A_1012	-	transcriptional regulator CysB-like protein
1008	 65.60	0	989859..991538	+	559	126454547	-	BURPS1106A_1013	-	sulfite reductase, ferredoxin subunit
1009	 70.90	0	991563..992105	+	180	126452080	-	BURPS1106A_1014	-	hypothetical protein
1010	 69.73	0	992102..992851	+	249	126453333	-	BURPS1106A_1015	-	phosphoadenosine phosphosulfate reductase
1011	 68.22	0	992932..993897	+	321	126453969	cysD	BURPS1106A_1016	-	sulfate adenylyltransferase subunit 2
1012	 66.82	0	993920..995236	+	438	126455060	cysN	BURPS1106A_1017	-	sulfate adenylyltransferase, large subunit
1013	 73.39	+1	995296..996069	+	257	126451772	cobA	BURPS1106A_1018	-	uroporphyrin-III C-methyltransferase
1014	 71.83	0	996280..996666	-	128	126452902	-	BURPS1106A_1019	-	putative sirohydrochlorin cobaltochelatase CbiX
1015	 63.63	0	996698..997849	-	383	126453481	-	BURPS1106A_1020	-	hypothetical protein
1016	 64.48	0	997853..998950	-	365	126453581	-	BURPS1106A_1021	-	hypothetical protein
1017	 67.46	0	999071..1000582	+	503	126452701	pepA	BURPS1106A_1022	-	leucyl aminopeptidase
1018	 68.82	0	1000626..1001042	+	138	126454054	holC	BURPS1106A_1023	-	DNA polymerase III subunit chi
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.