IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
884	 72.49	0	872205..873647	-	480	126454266	-	BURPS1106A_0888	-	mannitol dehydrogenase family protein
885	 71.58	0	873819..874835	-	338	126453253	-	BURPS1106A_0889	-	LysR family transcriptional regulator
886	 73.33	+1	874834..876453	+	539	126452093	mdlC	BURPS1106A_0890	-	benzoylformate decarboxylase
887	 73.07	+1	876589..878040	+	483	126452957	-	BURPS1106A_0891	-	putative vanillin dehydrogenase
888	 73.98	+1	878045..879001	+	318	126452512	panE	BURPS1106A_0892	-	2-dehydropantoate 2-reductase
889	 70.37	0	879482..879670	-	62	126455440	-	BURPS1106A_0893	-	hypothetical protein
890	 74.02	+1	879680..881134	+	484	126454908	-	BURPS1106A_0894	-	major facilitator family transporter
891	 69.40	0	881160..882221	-	353	126452072	kynA	BURPS1106A_0895	-	tryptophan 2,3-dioxygenase
892	 70.58	0	882179..883429	-	416	126452656	kynU	BURPS1106A_0896	-	kynureninase
893	 70.37	0	883471..884199	-	242	126453611	kynB	BURPS1106A_0897	-	arylformamidase
894	 65.08	0	884242..884745	+	167	126452736	-	BURPS1106A_0899	-	AsnC family transcriptional regulator
895	 66.47	0	884732..885247	-	171	126451696	-	BURPS1106A_0898	-	flavin reductase family protein
896	 68.67	0	885280..886179	+	299	126454402	msrA	BURPS1106A_0900	-	methionine-S-sulfoxide reductase
897	 79.67	+2	886290..886412	+	40	126455086	-	BURPS1106A_0901	-	hypothetical protein
898	 73.51	+1	886536..888113	-	525	126452128	-	BURPS1106A_0902	-	hypothetical protein
899	 64.46	0	888140..889360	-	406	126451741	cfa	BURPS1106A_0903	-	cyclopropane-fatty-acyl-phospholipid synthase
900	 68.84	0	889492..890136	-	214	126452524	pdxH	BURPS1106A_0904	-	pyridoxamine 5'-phosphate oxidase
901	 70.36	0	890270..891136	+	288	126453730	-	BURPS1106A_0905	-	HesA/MoeB/ThiF family protein
902	 69.96	0	891409..892257	-	282	126453155	-	BURPS1106A_0906	-	thioredoxin
903	 72.56	0	892311..893192	-	293	126454244	-	BURPS1106A_0907	-	pirin domain-containing protein
904	 70.51	0	893377..894261	+	294	126453908	-	BURPS1106A_0908	-	putative transporter
905	 70.71	0	894400..894597	+	65	126452038	-	BURPS1106A_0909	-	hypothetical protein
906	 68.72	0	894779..896335	-	518	126452927	-	BURPS1106A_0910	-	putative N-acetylmuramoyl-L-alanine amidase
907	 69.01	0	896317..896871	-	184	126453763	-	BURPS1106A_0911	-	hypothetical protein
908	 71.06	0	896889..898118	+	409	126455169	-	BURPS1106A_0912	-	putative iron-sulfur cluster-binding protein
909	 66.03	0	898189..898656	+	155	126452266	ogt	BURPS1106A_0913	-	methylated-DNA-protein-cysteine S-methyltransferase
910	 69.26	0	898656..899657	+	333	126455125	xerD	BURPS1106A_0914	-	site-specific tyrosine recombinase XerD
911	 70.75	0	899654..899800	+	48	126451771	-	BURPS1106A_0915	-	hypothetical protein
912	 71.39	0	899942..901507	-	521	126452811	-	BURPS1106A_0916	-	AMP-binding protein
913	 66.46	0	901637..902128	+	163	126453507	-	BURPS1106A_0917	-	YbaK/prolyl-tRNA synthetase domain-containing protein
914	 66.83	0	902237..902848	+	203	126454626	-	BURPS1106A_0918	-	putative glycerol-3-phosphate acyltransferase PlsY
915	 58.64	-1	903078..903563	-	161	126455262	-	BURPS1106A_0919	-	nucleotide-binding protein
916	 71.65	0	903706..904749	+	347	126454230	murB	BURPS1106A_0920	-	UDP-N-acetylenolpyruvoylglucosamine reductase
917	 63.87	0	904935..905864	-	309	126455355	argF	BURPS1106A_0921	-	ornithine carbamoyltransferase
918	 59.88	-1	906290..906613	+	107	126452039	-	BURPS1106A_0922	-	hypothetical protein
919	 63.80	0	906842..907120	-	92	126453217	rpsT	BURPS1106A_0923	-	30S ribosomal protein S20
920	 66.39	0	907297..909075	+	592	126454372	mviN	BURPS1106A_0924	-	integral membrane protein MviN
921	 68.21	0	909085..909927	+	280	126454496	-	BURPS1106A_0925	-	hypothetical protein
922	 68.54	0	910196..911155	-	319	126451637	-	BURPS1106A_0926	-	short chain dehydrogenase/reductase family oxidoreductase
923	 65.31	0	911152..911814	-	220	126452690	adk	BURPS1106A_0927	-	adenylate kinase
924	 70.45	0	912023..912814	-	263	126453920	kdsB	BURPS1106A_0928	-	3-deoxy-manno-octulosonate cytidylyltransferase
925	 67.63	0	912988..913194	-	68	126454062	-	BURPS1106A_0929	-	hypothetical protein
926	 73.65	+1	913175..914305	-	376	126453033	lpxK	BURPS1106A_0930	-	tetraacyldisaccharide 4'-kinase
927	 64.07	0	914436..914666	-	76	126451813	-	BURPS1106A_0931	-	hypothetical protein
928	 73.90	+1	914661..916043	+	460	126455268	xseA	BURPS1106A_0932	-	exodeoxyribonuclease VII large subunit
929	 62.18	-1	916240..916818	+	192	126454128	sodB	BURPS1106A_0933	-	superoxide dismutase (Fe)
930	 66.18	0	916983..917189	+	68	126453553	-	BURPS1106A_0934	-	hypothetical protein
931	 66.91	0	917307..918521	+	404	126452364	-	BURPS1106A_0935	-	hypothetical protein
932	 74.03	+1	918620..918877	+	85	126451801	-	BURPS1106A_0936	-	hypothetical protein
933	 74.54	+1	919263..920468	-	401	126454677	-	BURPS1106A_0937	-	chromate transporter
934	 70.24	0	920702..921457	-	251	126453994	-	BURPS1106A_0938	-	cyclic nucleotide-binding protein
935	 70.27	0	921542..922069	+	175	126452824	-	BURPS1106A_0939	-	hypothetical protein
936	 73.80	+1	922085..923107	+	340	126455021	panE	BURPS1106A_0940	-	2-dehydropantoate 2-reductase
937	 64.39	0	923260..923391	-	43	126452751	-	BURPS1106A_0941	-	hypothetical protein
938	 72.44	0	923647..924252	+	201	126452729	-	BURPS1106A_0942	-	hypothetical protein
939	 69.50	0	924363..925631	-	422	126453626	-	BURPS1106A_0943	-	cyclic diguanylate phosphodiesterase
940	 77.04	+1	925692..925826	+	44	126454561	-	BURPS1106A_0944	-	hypothetical protein
941	 67.15	0	926289..927728	-	479	126452379	-	BURPS1106A_0945	-	DHA2 family drug:H+ antiporter-1
942	 73.51	+1	928025..928360	+	111	126453301	-	BURPS1106A_0947	-	hypothetical protein
943	 75.83	+1	928333..929685	-	450	126452427	-	BURPS1106A_0946	-	citrate synthase family protein
944	 76.39	+1	929826..929969	-	47	126454029	-	BURPS1106A_0948	-	hypothetical protein
945	 72.81	0	929977..930432	+	151	126454629	-	BURPS1106A_0950	-	hypothetical protein
946	 65.46	0	930402..931148	-	248	126451927	-	BURPS1106A_0949	-	GntR family transcriptional regulator
947	 69.03	0	931317..932162	+	281	126452797	-	BURPS1106A_0952	-	aldo/keto reductase family oxidoreductase
948	 71.35	0	932122..932505	-	127	126453897	-	BURPS1106A_0951	-	hypothetical protein
949	 71.19	0	932502..933164	-	220	126452149	-	BURPS1106A_0953	-	hypothetical protein
950	 71.74	0	933122..935347	-	741	126454432	-	BURPS1106A_0954	-	hypothetical protein
951	 76.59	+1	935320..935571	+	83	126453124	-	BURPS1106A_0955	-	hypothetical protein
952	 66.08	0	935691..938096	-	801	126454785	fusA	BURPS1106A_0956	-	elongation factor G
953	 67.06	0	938103..938612	-	169	126453857	-	BURPS1106A_0957	-	hypothetical protein
954	 73.23	+1	939285..939863	-	192	126453501	-	BURPS1106A_0958	-	RNA pseudouridine synthase family protein
955	 62.06	-1	940131..941390	+	419	126453346	icd	BURPS1106A_0960	-	isocitrate dehydrogenase
956	 64.48	0	941363..941545	-	60	126452842	-	BURPS1106A_0959	-	hypothetical protein
957	 70.95	0	941558..943168	+	536	126453660	-	BURPS1106A_0961	-	multicopper oxidase family protein
958	 53.43	-2	943298..943501	-	67	126453970	-	BURPS1106A_0962	-	cold shock protein
959	 56.51	-2	944034..944348	+	104	126455350	clpS	BURPS1106A_0963	-	ATP-dependent Clp protease adaptor protein ClpS
960	 64.93	0	944345..946645	+	766	126452761	clpA	BURPS1106A_0964	-	ATP-dependent Clp protease ATP-binding subunit ClpA
961	 66.74	0	946745..948121	+	458	126453093	-	BURPS1106A_0965	-	amino acid permease
962	 71.77	0	948194..948937	+	247	126453919	-	BURPS1106A_0966	-	hypothetical protein
963	 65.64	0	949102..949884	+	260	126454774	-	BURPS1106A_0967	-	hypothetical protein
964	 68.90	0	949973..950419	-	148	126451592	dut	BURPS1106A_0968	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
965	 69.47	0	950483..951694	-	403	126452551	coaBC	BURPS1106A_0969	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
966	 66.47	0	951756..952256	-	166	126453443	lspA	BURPS1106A_0970	-	signal peptidase II
967	 66.77	0	952256..955093	-	945	126452873	ileS	BURPS1106A_0971	-	isoleucyl-tRNA synthetase
968	 71.30	0	955205..956197	-	330	126452288	bimA	BURPS1106A_0972	-	bifunctional riboflavin kinase/FMN adenylyltransferase
969	 69.53	0	956322..956984	+	220	126454710	purN	BURPS1106A_0973	-	phosphoribosylglycinamide formyltransferase
970	 70.70	0	956981..958243	+	420	126454034	sun	BURPS1106A_0974	-	rRNA small subunit methyltransferase B
971	 70.66	0	958255..959607	+	450	126452978	-	BURPS1106A_0975	-	small conductance mechanosensitive ion channel (MscS) family protein
972	 63.83	0	959804..961000	+	398	126452903	-	BURPS1106A_0976	-	fatty acid desaturase family protein
973	 63.77	0	961037..961174	-	45	126451803	-	BURPS1106A_0977	-	hypothetical protein
974	 67.55	0	961169..962305	+	378	126451762	nadA	BURPS1106A_0978	-	quinolinate synthetase
975	 70.06	0	962302..963186	+	294	126454043	nadC	BURPS1106A_0979	-	nicotinate-nucleotide pyrophosphorylase
976	 75.80	+1	963188..963406	+	72	126454503	-	BURPS1106A_0981	-	hypothetical protein
977	 67.54	0	963378..965090	-	570	126454473	nadB	BURPS1106A_0980	-	L-aspartate oxidase
978	 53.57	-2	965147..965314	-	55	126453616	rpmG	BURPS1106A_0982	-	50S ribosomal protein L33
979	 60.68	-1	965332..965565	-	77	126452424	rpmB	BURPS1106A_0983	-	50S ribosomal protein L28
980	 74.07	+1	965859..966695	-	278	126455030	radC	BURPS1106A_0984	-	DNA repair protein RadC
981	 65.13	0	966834..967289	+	151	126455033	fkpB	BURPS1106A_0985	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
982	 68.20	0	967292..968272	+	326	126454143	ispH	BURPS1106A_0986	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
983	 62.50	0	968418..969521	+	367	126452273	-	BURPS1106A_0987	-	transposase, IS4
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.