IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
832	 71.30	0	817903..818226	+	107	126452104	-	BURPS1106A_0836	-	AzlD family protein
833	 74.80	+1	818353..818475	-	40	126455095	-	BURPS1106A_0837	-	hypothetical protein
834	 68.34	0	818493..819686	+	397	126453516	pgk	BURPS1106A_0838	-	phosphoglycerate kinase
835	 75.36	+1	819767..820042	+	91	126454228	-	BURPS1106A_0839	-	hypothetical protein
836	 68.06	0	820021..821457	+	478	126452857	pyk	BURPS1106A_0840	-	pyruvate kinase
837	 65.26	0	821747..822811	+	354	126451721	fba	BURPS1106A_0841	-	fructose-1,6-bisphosphate aldolase
838	 66.44	0	823001..823891	+	296	126455088	purC	BURPS1106A_0842	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
839	 70.91	0	823927..824445	+	172	126454425	purE	BURPS1106A_0843	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
840	 71.60	0	824525..825721	+	398	126454636	purK	BURPS1106A_0844	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
841	 74.07	+1	825733..826758	+	341	126453889	-	BURPS1106A_0845	-	Sua5/YciO/YrdC/YwlC family protein
842	 70.18	0	827094..828233	-	379	126452527	-	BURPS1106A_0846	-	hypothetical protein
843	 64.71	0	828338..829255	-	305	126451698	-	BURPS1106A_0847	-	sterol desaturase family protein
844	 67.06	0	829464..829715	-	83	126451607	-	BURPS1106A_0848	-	hypothetical protein
845	 71.70	0	829691..831379	-	562	126455229	dacB	BURPS1106A_0849	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
846	 69.83	0	831410..832072	+	220	126452671	-	BURPS1106A_0850	-	DNA-binding response regulator
847	 72.67	0	832076..833392	+	438	126451567	-	BURPS1106A_0851	-	sensor histidine kinase
848	 74.13	+1	833396..833797	+	133	126454420	-	BURPS1106A_0852	-	hypothetical protein
849	 68.28	0	833854..835341	+	495	126453300	-	BURPS1106A_0853	-	serine protease
850	 70.21	0	835501..835923	+	140	126453104	-	BURPS1106A_0854	-	hypothetical protein
851	 64.75	0	836051..836416	+	121	126451873	-	BURPS1106A_0855	-	hypothetical protein
852	 73.39	+1	836444..837172	+	242	126454764	-	BURPS1106A_0856	-	carbon monoxide dehydrogenase family protein
853	 67.14	0	837510..838145	-	211	126453576	bpeR	BURPS1106A_0857	-	multidrug efflux pump repressor protein BpeR
854	 64.63	0	838389..838535	+	48	126453448	-	BURPS1106A_0858	-	hypothetical protein
855	 69.83	0	838555..839817	+	420	126452582	bpeA	BURPS1106A_0859	-	multidrug efflux periplasmic linker protein BpeA
856	 65.26	0	839833..843033	+	1066	126453664	bpeB	BURPS1106A_0860	-	inner membrane multidrug efflux protein BpeB
857	 71.39	0	843037..844581	+	514	126454516	oprB	BURPS1106A_0861	-	outer membrane efflux protein OprB
858	 69.16	0	844860..845180	-	106	126452990	-	BURPS1106A_0862	-	hypothetical protein
859	 65.00	0	845177..846616	-	479	126452775	pbuX	BURPS1106A_0863	-	xanthine permease
860	 76.77	+1	846951..848375	+	474	126454129	-	BURPS1106A_0864	-	carbohydrate kinase
861	 69.18	0	848680..849714	-	344	126455005	-	BURPS1106A_0865	-	DJ-1/PfpI family protein/transcriptional regulator, AraC family
862	 64.95	0	849919..851025	+	368	126451444	-	BURPS1106A_0866	-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
863	 69.69	0	851039..851899	+	286	126453351	fghA	BURPS1106A_0867	-	S-formylglutathione hydrolase
864	 71.15	0	852044..852868	-	274	126454418	-	BURPS1106A_0868	-	putative cation ABC transporter, permease protein
865	 70.73	0	852828..853688	-	286	126455219	-	BURPS1106A_0869	-	putative cation ABC transporter, ATP-binding protein
866	 70.30	0	853723..854685	-	320	126453338	-	BURPS1106A_0870	-	putative cation ABC transporter, periplasmic cation-binding protein
867	 69.03	0	854874..855338	-	154	126454231	-	BURPS1106A_0871	-	FUR family transcriptional regulator
868	 70.01	0	855632..856408	+	258	126453608	-	BURPS1106A_0872	-	sorbitol dehydrogenase
869	 74.40	+1	856413..857369	+	318	126452357	-	BURPS1106A_0873	-	PfkB family kinase
870	 73.68	+1	857357..858853	+	498	126451824	-	BURPS1106A_0874	-	tagatose 6-phosphate kinase
871	 66.74	0	858904..860232	+	442	126453944	-	BURPS1106A_0876	-	putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein
872	 75.19	+1	860220..860348	-	42	126452874	-	BURPS1106A_0875	-	hypothetical protein
873	 66.25	0	860328..861284	+	318	126455091	-	BURPS1106A_0877	-	putative sorbitol/mannitol ABC transporter, permease protein
874	 65.63	0	861281..862147	+	288	126454655	-	BURPS1106A_0878	-	putative sorbitol/mannitol ABC transporter, permease protein
875	 74.11	+1	862144..862842	+	232	126453369	-	BURPS1106A_0879	-	HAD family hydrolase
876	 67.95	0	862849..864015	+	388	126454613	-	BURPS1106A_0880	-	carbohydrate ABC transporter ATP-binding protein
877	 67.74	0	864234..865535	-	433	126453437	-	BURPS1106A_0881	-	hypothetical protein
878	 71.34	0	865515..865835	+	106	126452160	-	BURPS1106A_0882	-	hypothetical protein
879	 71.64	0	865991..866875	-	294	126455278	-	BURPS1106A_0883	-	LysR family transcriptional regulator
880	 74.77	+1	867013..868209	+	398	126452693	-	BURPS1106A_0884	-	putative esterase
881	 76.16	+1	868206..869417	+	403	126453044	-	BURPS1106A_0885	-	major facilitator family transporter
882	 71.20	0	869579..870526	-	315	126451833	-	BURPS1106A_0886	-	putative transcriptional regulator
883	 74.70	+1	870613..872094	-	493	126454717	xylB	BURPS1106A_0887	-	xylulokinase
884	 72.49	0	872205..873647	-	480	126454266	-	BURPS1106A_0888	-	mannitol dehydrogenase family protein
885	 71.58	0	873819..874835	-	338	126453253	-	BURPS1106A_0889	-	LysR family transcriptional regulator
886	 73.33	+1	874834..876453	+	539	126452093	mdlC	BURPS1106A_0890	-	benzoylformate decarboxylase
887	 73.07	+1	876589..878040	+	483	126452957	-	BURPS1106A_0891	-	putative vanillin dehydrogenase
888	 73.98	+1	878045..879001	+	318	126452512	panE	BURPS1106A_0892	-	2-dehydropantoate 2-reductase
889	 70.37	0	879482..879670	-	62	126455440	-	BURPS1106A_0893	-	hypothetical protein
890	 74.02	+1	879680..881134	+	484	126454908	-	BURPS1106A_0894	-	major facilitator family transporter
891	 69.40	0	881160..882221	-	353	126452072	kynA	BURPS1106A_0895	-	tryptophan 2,3-dioxygenase
892	 70.58	0	882179..883429	-	416	126452656	kynU	BURPS1106A_0896	-	kynureninase
893	 70.37	0	883471..884199	-	242	126453611	kynB	BURPS1106A_0897	-	arylformamidase
894	 65.08	0	884242..884745	+	167	126452736	-	BURPS1106A_0899	-	AsnC family transcriptional regulator
895	 66.47	0	884732..885247	-	171	126451696	-	BURPS1106A_0898	-	flavin reductase family protein
896	 68.67	0	885280..886179	+	299	126454402	msrA	BURPS1106A_0900	-	methionine-S-sulfoxide reductase
897	 79.67	+2	886290..886412	+	40	126455086	-	BURPS1106A_0901	-	hypothetical protein
898	 73.51	+1	886536..888113	-	525	126452128	-	BURPS1106A_0902	-	hypothetical protein
899	 64.46	0	888140..889360	-	406	126451741	cfa	BURPS1106A_0903	-	cyclopropane-fatty-acyl-phospholipid synthase
900	 68.84	0	889492..890136	-	214	126452524	pdxH	BURPS1106A_0904	-	pyridoxamine 5'-phosphate oxidase
901	 70.36	0	890270..891136	+	288	126453730	-	BURPS1106A_0905	-	HesA/MoeB/ThiF family protein
902	 69.96	0	891409..892257	-	282	126453155	-	BURPS1106A_0906	-	thioredoxin
903	 72.56	0	892311..893192	-	293	126454244	-	BURPS1106A_0907	-	pirin domain-containing protein
904	 70.51	0	893377..894261	+	294	126453908	-	BURPS1106A_0908	-	putative transporter
905	 70.71	0	894400..894597	+	65	126452038	-	BURPS1106A_0909	-	hypothetical protein
906	 68.72	0	894779..896335	-	518	126452927	-	BURPS1106A_0910	-	putative N-acetylmuramoyl-L-alanine amidase
907	 69.01	0	896317..896871	-	184	126453763	-	BURPS1106A_0911	-	hypothetical protein
908	 71.06	0	896889..898118	+	409	126455169	-	BURPS1106A_0912	-	putative iron-sulfur cluster-binding protein
909	 66.03	0	898189..898656	+	155	126452266	ogt	BURPS1106A_0913	-	methylated-DNA-protein-cysteine S-methyltransferase
910	 69.26	0	898656..899657	+	333	126455125	xerD	BURPS1106A_0914	-	site-specific tyrosine recombinase XerD
911	 70.75	0	899654..899800	+	48	126451771	-	BURPS1106A_0915	-	hypothetical protein
912	 71.39	0	899942..901507	-	521	126452811	-	BURPS1106A_0916	-	AMP-binding protein
913	 66.46	0	901637..902128	+	163	126453507	-	BURPS1106A_0917	-	YbaK/prolyl-tRNA synthetase domain-containing protein
914	 66.83	0	902237..902848	+	203	126454626	-	BURPS1106A_0918	-	putative glycerol-3-phosphate acyltransferase PlsY
915	 58.64	-1	903078..903563	-	161	126455262	-	BURPS1106A_0919	-	nucleotide-binding protein
916	 71.65	0	903706..904749	+	347	126454230	murB	BURPS1106A_0920	-	UDP-N-acetylenolpyruvoylglucosamine reductase
917	 63.87	0	904935..905864	-	309	126455355	argF	BURPS1106A_0921	-	ornithine carbamoyltransferase
918	 59.88	-1	906290..906613	+	107	126452039	-	BURPS1106A_0922	-	hypothetical protein
919	 63.80	0	906842..907120	-	92	126453217	rpsT	BURPS1106A_0923	-	30S ribosomal protein S20
920	 66.39	0	907297..909075	+	592	126454372	mviN	BURPS1106A_0924	-	integral membrane protein MviN
921	 68.21	0	909085..909927	+	280	126454496	-	BURPS1106A_0925	-	hypothetical protein
922	 68.54	0	910196..911155	-	319	126451637	-	BURPS1106A_0926	-	short chain dehydrogenase/reductase family oxidoreductase
923	 65.31	0	911152..911814	-	220	126452690	adk	BURPS1106A_0927	-	adenylate kinase
924	 70.45	0	912023..912814	-	263	126453920	kdsB	BURPS1106A_0928	-	3-deoxy-manno-octulosonate cytidylyltransferase
925	 67.63	0	912988..913194	-	68	126454062	-	BURPS1106A_0929	-	hypothetical protein
926	 73.65	+1	913175..914305	-	376	126453033	lpxK	BURPS1106A_0930	-	tetraacyldisaccharide 4'-kinase
927	 64.07	0	914436..914666	-	76	126451813	-	BURPS1106A_0931	-	hypothetical protein
928	 73.90	+1	914661..916043	+	460	126455268	xseA	BURPS1106A_0932	-	exodeoxyribonuclease VII large subunit
929	 62.18	-1	916240..916818	+	192	126454128	sodB	BURPS1106A_0933	-	superoxide dismutase (Fe)
930	 66.18	0	916983..917189	+	68	126453553	-	BURPS1106A_0934	-	hypothetical protein
931	 66.91	0	917307..918521	+	404	126452364	-	BURPS1106A_0935	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.