IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
799	 57.76	-1	787110..787502	-	130	126454269	-	BURPS1106A_0802	-	hypothetical protein
800	 56.35	-2	788983..789360	+	125	126452293	-	BURPS1106A_0803	-	hypothetical protein
801	 58.19	-1	789470..789646	-	58	126453375	-	BURPS1106A_0804	-	hypothetical protein
802	 54.48	-2	790419..790976	-	185	126454026	-	BURPS1106A_0805	-	hypothetical protein
803	 58.02	-1	790978..791775	-	265	126453752	-	BURPS1106A_0806	-	hypothetical protein
804	 64.65	0	791917..792759	-	280	126454857	-	BURPS1106A_0807	-	hypothetical protein
805	 62.62	0	792799..794157	-	452	126451551	-	BURPS1106A_0808	-	phage integrase family site specific recombinase
806	 76.39	+1	794420..794563	-	47	126453460	-	BURPS1106A_0810	-	hypothetical protein
807	 64.74	0	794560..796218	-	552	126454549	-	BURPS1106A_0811	-	major facilitator family transporter
808	 70.71	0	796441..797997	-	518	126454999	-	BURPS1106A_0812	-	sensor histidine kinase
809	 69.62	0	798021..798764	-	247	126452265	-	BURPS1106A_0813	-	DNA-binding response regulator
810	 64.24	0	798968..800038	+	356	126452699	recA	BURPS1106A_0814	-	recombinase A
811	 71.14	0	800038..801021	+	327	126454103	recX	BURPS1106A_0815	-	recombination regulator RecX
812	 68.79	0	801313..801924	+	203	126454486	-	BURPS1106A_0816	-	hypothetical protein
813	 63.07	0	802004..803170	+	388	126451915	sucC	BURPS1106A_0817	-	succinyl-CoA synthetase subunit beta
814	 64.09	0	803266..804195	+	309	126452387	sucD	BURPS1106A_0818	-	succinyl-CoA synthetase subunit alpha
815	 68.14	0	804247..805059	+	270	126453641	-	BURPS1106A_0819	-	TerC family integral membrane protein
816	 71.96	0	805173..805796	+	207	126452908	-	BURPS1106A_0820	-	putative type IV pilin protein PilA
817	 68.74	0	806034..807821	+	595	126451737	-	BURPS1106A_0821	-	O-antigen polymerase family protein
818	 64.05	0	807818..807970	+	50	126454809	-	BURPS1106A_0822	-	hypothetical protein
819	 67.09	0	808382..808855	+	157	126453890	-	BURPS1106A_0823	-	hypothetical protein
820	 70.27	0	808874..809095	+	73	126453078	-	BURPS1106A_0824	-	hypothetical protein
821	 70.22	0	809092..809457	+	121	126452780	-	BURPS1106A_0825	-	TonB domain-containing protein
822	 68.69	0	809654..810148	-	164	126455356	moaC	BURPS1106A_0826	-	molybdenum cofactor biosynthesis protein C
823	 72.54	0	810246..812015	+	589	126454072	-	BURPS1106A_0827	-	hypothetical protein
824	 62.96	0	812130..812291	-	53	126454272	-	BURPS1106A_0828	-	hypothetical protein
825	 73.56	+1	812333..812956	-	207	126453423	-	BURPS1106A_0829	-	hypothetical protein
826	 71.40	0	812949..813983	-	344	126452642	-	BURPS1106A_0830	-	alpha/beta fold family hydrolase
827	 67.56	0	814003..814449	-	148	126453250	-	BURPS1106A_0831	-	hypothetical protein
828	 68.68	0	814581..815621	-	346	126454744	rfaF	BURPS1106A_0832	-	lipopolysaccharide heptosyltransferase II
829	 65.15	0	815749..815946	-	65	126453633	-	BURPS1106A_0833	-	hypothetical protein
830	 65.15	0	816012..816935	-	307	126453823	ilvE	BURPS1106A_0834	-	branched-chain amino acid aminotransferase
831	 68.67	0	817157..817906	+	249	126452720	-	BURPS1106A_0835	-	AzlC family protein
832	 71.30	0	817903..818226	+	107	126452104	-	BURPS1106A_0836	-	AzlD family protein
833	 74.80	+1	818353..818475	-	40	126455095	-	BURPS1106A_0837	-	hypothetical protein
834	 68.34	0	818493..819686	+	397	126453516	pgk	BURPS1106A_0838	-	phosphoglycerate kinase
835	 75.36	+1	819767..820042	+	91	126454228	-	BURPS1106A_0839	-	hypothetical protein
836	 68.06	0	820021..821457	+	478	126452857	pyk	BURPS1106A_0840	-	pyruvate kinase
837	 65.26	0	821747..822811	+	354	126451721	fba	BURPS1106A_0841	-	fructose-1,6-bisphosphate aldolase
838	 66.44	0	823001..823891	+	296	126455088	purC	BURPS1106A_0842	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
839	 70.91	0	823927..824445	+	172	126454425	purE	BURPS1106A_0843	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
840	 71.60	0	824525..825721	+	398	126454636	purK	BURPS1106A_0844	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
841	 74.07	+1	825733..826758	+	341	126453889	-	BURPS1106A_0845	-	Sua5/YciO/YrdC/YwlC family protein
842	 70.18	0	827094..828233	-	379	126452527	-	BURPS1106A_0846	-	hypothetical protein
843	 64.71	0	828338..829255	-	305	126451698	-	BURPS1106A_0847	-	sterol desaturase family protein
844	 67.06	0	829464..829715	-	83	126451607	-	BURPS1106A_0848	-	hypothetical protein
845	 71.70	0	829691..831379	-	562	126455229	dacB	BURPS1106A_0849	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
846	 69.83	0	831410..832072	+	220	126452671	-	BURPS1106A_0850	-	DNA-binding response regulator
847	 72.67	0	832076..833392	+	438	126451567	-	BURPS1106A_0851	-	sensor histidine kinase
848	 74.13	+1	833396..833797	+	133	126454420	-	BURPS1106A_0852	-	hypothetical protein
849	 68.28	0	833854..835341	+	495	126453300	-	BURPS1106A_0853	-	serine protease
850	 70.21	0	835501..835923	+	140	126453104	-	BURPS1106A_0854	-	hypothetical protein
851	 64.75	0	836051..836416	+	121	126451873	-	BURPS1106A_0855	-	hypothetical protein
852	 73.39	+1	836444..837172	+	242	126454764	-	BURPS1106A_0856	-	carbon monoxide dehydrogenase family protein
853	 67.14	0	837510..838145	-	211	126453576	bpeR	BURPS1106A_0857	-	multidrug efflux pump repressor protein BpeR
854	 64.63	0	838389..838535	+	48	126453448	-	BURPS1106A_0858	-	hypothetical protein
855	 69.83	0	838555..839817	+	420	126452582	bpeA	BURPS1106A_0859	-	multidrug efflux periplasmic linker protein BpeA
856	 65.26	0	839833..843033	+	1066	126453664	bpeB	BURPS1106A_0860	-	inner membrane multidrug efflux protein BpeB
857	 71.39	0	843037..844581	+	514	126454516	oprB	BURPS1106A_0861	-	outer membrane efflux protein OprB
858	 69.16	0	844860..845180	-	106	126452990	-	BURPS1106A_0862	-	hypothetical protein
859	 65.00	0	845177..846616	-	479	126452775	pbuX	BURPS1106A_0863	-	xanthine permease
860	 76.77	+1	846951..848375	+	474	126454129	-	BURPS1106A_0864	-	carbohydrate kinase
861	 69.18	0	848680..849714	-	344	126455005	-	BURPS1106A_0865	-	DJ-1/PfpI family protein/transcriptional regulator, AraC family
862	 64.95	0	849919..851025	+	368	126451444	-	BURPS1106A_0866	-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
863	 69.69	0	851039..851899	+	286	126453351	fghA	BURPS1106A_0867	-	S-formylglutathione hydrolase
864	 71.15	0	852044..852868	-	274	126454418	-	BURPS1106A_0868	-	putative cation ABC transporter, permease protein
865	 70.73	0	852828..853688	-	286	126455219	-	BURPS1106A_0869	-	putative cation ABC transporter, ATP-binding protein
866	 70.30	0	853723..854685	-	320	126453338	-	BURPS1106A_0870	-	putative cation ABC transporter, periplasmic cation-binding protein
867	 69.03	0	854874..855338	-	154	126454231	-	BURPS1106A_0871	-	FUR family transcriptional regulator
868	 70.01	0	855632..856408	+	258	126453608	-	BURPS1106A_0872	-	sorbitol dehydrogenase
869	 74.40	+1	856413..857369	+	318	126452357	-	BURPS1106A_0873	-	PfkB family kinase
870	 73.68	+1	857357..858853	+	498	126451824	-	BURPS1106A_0874	-	tagatose 6-phosphate kinase
871	 66.74	0	858904..860232	+	442	126453944	-	BURPS1106A_0876	-	putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein
872	 75.19	+1	860220..860348	-	42	126452874	-	BURPS1106A_0875	-	hypothetical protein
873	 66.25	0	860328..861284	+	318	126455091	-	BURPS1106A_0877	-	putative sorbitol/mannitol ABC transporter, permease protein
874	 65.63	0	861281..862147	+	288	126454655	-	BURPS1106A_0878	-	putative sorbitol/mannitol ABC transporter, permease protein
875	 74.11	+1	862144..862842	+	232	126453369	-	BURPS1106A_0879	-	HAD family hydrolase
876	 67.95	0	862849..864015	+	388	126454613	-	BURPS1106A_0880	-	carbohydrate ABC transporter ATP-binding protein
877	 67.74	0	864234..865535	-	433	126453437	-	BURPS1106A_0881	-	hypothetical protein
878	 71.34	0	865515..865835	+	106	126452160	-	BURPS1106A_0882	-	hypothetical protein
879	 71.64	0	865991..866875	-	294	126455278	-	BURPS1106A_0883	-	LysR family transcriptional regulator
880	 74.77	+1	867013..868209	+	398	126452693	-	BURPS1106A_0884	-	putative esterase
881	 76.16	+1	868206..869417	+	403	126453044	-	BURPS1106A_0885	-	major facilitator family transporter
882	 71.20	0	869579..870526	-	315	126451833	-	BURPS1106A_0886	-	putative transcriptional regulator
883	 74.70	+1	870613..872094	-	493	126454717	xylB	BURPS1106A_0887	-	xylulokinase
884	 72.49	0	872205..873647	-	480	126454266	-	BURPS1106A_0888	-	mannitol dehydrogenase family protein
885	 71.58	0	873819..874835	-	338	126453253	-	BURPS1106A_0889	-	LysR family transcriptional regulator
886	 73.33	+1	874834..876453	+	539	126452093	mdlC	BURPS1106A_0890	-	benzoylformate decarboxylase
887	 73.07	+1	876589..878040	+	483	126452957	-	BURPS1106A_0891	-	putative vanillin dehydrogenase
888	 73.98	+1	878045..879001	+	318	126452512	panE	BURPS1106A_0892	-	2-dehydropantoate 2-reductase
889	 70.37	0	879482..879670	-	62	126455440	-	BURPS1106A_0893	-	hypothetical protein
890	 74.02	+1	879680..881134	+	484	126454908	-	BURPS1106A_0894	-	major facilitator family transporter
891	 69.40	0	881160..882221	-	353	126452072	kynA	BURPS1106A_0895	-	tryptophan 2,3-dioxygenase
892	 70.58	0	882179..883429	-	416	126452656	kynU	BURPS1106A_0896	-	kynureninase
893	 70.37	0	883471..884199	-	242	126453611	kynB	BURPS1106A_0897	-	arylformamidase
894	 65.08	0	884242..884745	+	167	126452736	-	BURPS1106A_0899	-	AsnC family transcriptional regulator
895	 66.47	0	884732..885247	-	171	126451696	-	BURPS1106A_0898	-	flavin reductase family protein
896	 68.67	0	885280..886179	+	299	126454402	msrA	BURPS1106A_0900	-	methionine-S-sulfoxide reductase
897	 79.67	+2	886290..886412	+	40	126455086	-	BURPS1106A_0901	-	hypothetical protein
898	 73.51	+1	886536..888113	-	525	126452128	-	BURPS1106A_0902	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.