IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3867	 69.08	0	3839035..3839739	-	234	126454009	cheD	BURPS1106A_3932	-	chemoreceptor glutamine deamidase CheD
3868	 67.62	0	3839736..3840683	-	315	126451760	cheR	BURPS1106A_3933	-	chemotaxis protein methyltransferase CheR
3869	 71.71	0	3840687..3842708	-	673	126452850	-	BURPS1106A_3934	-	methyl-accepting chemotaxis protein
3870	 63.83	0	3842749..3843276	-	175	126451858	cheW	BURPS1106A_3935	-	chemotaxis protein CheW
3871	 70.89	0	3843307..3845604	-	765	126454963	cheA	BURPS1106A_3936	-	chemotaxis protein CheA
3872	 66.67	0	3845636..3846016	-	126	126454141	cheY	BURPS1106A_3937	-	chemotaxis protein CheY
3873	 67.55	0	3846047..3847069	-	340	126452767	motB	BURPS1106A_3938	-	flagellar motor protein MotB
3874	 65.39	0	3847086..3847946	-	286	126451764	-	BURPS1106A_3939	-	flagellar motor protein MotA
3875	 63.77	0	3848140..3848691	-	183	126455028	flhC	BURPS1106A_3940	-	transcriptional activator FlhC
3876	 64.17	0	3848785..3849105	-	106	126454127	flhD	BURPS1106A_3941	-	transcriptional activator FlhD
3877	 65.54	0	3849699..3850763	+	354	126454318	-	BURPS1106A_3942	-	glycosyl transferase, group 1 family protein
3878	 65.32	0	3850867..3851163	-	98	126453196	-	BURPS1106A_3943	-	H-NS histone family protein
3879	 49.76	-2	3851062..3851268	+	68	126454592	-	BURPS1106A_3944	-	hypothetical protein
3880	 68.79	0	3851469..3852173	+	234	126455312	aqpZ	BURPS1106A_3945	-	aquaporin Z
3881	 65.09	0	3852362..3853183	-	273	126455443	-	BURPS1106A_3946	-	HAD family hydrolase
3882	 74.68	+1	3853303..3854238	-	311	126454335	-	BURPS1106A_3947	-	BadF/BadG/BcrA/BcrD ATPase family protein
3883	 65.68	0	3854344..3854952	+	202	126453188	tag	BURPS1106A_3948	-	DNA-3-methyladenine glycosidase I
3884	 73.49	+1	3855087..3855335	+	82	126452769	-	BURPS1106A_3949	-	hypothetical protein
3885	 60.23	-1	3855339..3855602	-	87	126454796	rpsU	BURPS1106A_3950	-	30S ribosomal protein S21
3886	 68.25	0	3855788..3855913	-	41	126453888	-	BURPS1106A_3951	-	hypothetical protein
3887	 65.47	0	3856109..3857275	+	388	126452490	fliC	BURPS1106A_3952	-	flagellin
3888	 67.26	0	3857425..3858945	+	506	126451618	fliD	BURPS1106A_3953	-	flagellar hook-associated protein
3889	 65.08	0	3858959..3859273	+	104	126452338	-	BURPS1106A_3954	-	hypothetical protein
3890	 68.64	0	3859496..3861826	+	776	126452788	-	BURPS1106A_3955	-	TPR repeat-containing protein
3891	 64.49	0	3861823..3862971	+	382	126453649	-	BURPS1106A_3956	-	aminotransferase
3892	 68.50	0	3862968..3864002	+	344	126454553	-	BURPS1106A_3957	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase III
3893	 64.41	0	3864014..3864235	+	73	126453659	-	BURPS1106A_3958	-	putative acyl carrier protein
3894	 69.30	0	3864238..3865302	+	354	126454521	fabH	BURPS1106A_3959	-	3-oxoacyl-(acyl-carrier-protein) synthase III
3895	 73.78	+1	3865305..3866063	+	252	126455374	-	BURPS1106A_3960	-	short chain dehydrogenase/reductase family oxidoreductase
3896	 68.56	0	3866063..3866695	+	210	126452282	-	BURPS1106A_3961	-	hexapeptide repeat-containing transferase
3897	 65.26	0	3866697..3867761	+	354	126453073	-	BURPS1106A_3962	-	Rieske family iron-sulfur cluster-binding protein
3898	 55.15	-2	3867841..3868578	-	245	126453972	-	BURPS1106A_3963	-	hypothetical protein
3899	 61.62	-1	3868903..3869814	-	303	126455194	-	BURPS1106A_3964	-	hypothetical protein
3900	 69.55	0	3869861..3870484	+	207	126453398	-	BURPS1106A_3965	-	LysE family translocator protein
3901	 69.13	0	3870785..3872446	-	553	126455011	acpA	BURPS1106A_3966	-	acid phosphatase AcpA
3902	 68.90	0	3872443..3872934	-	163	126454091	-	BURPS1106A_3967	-	hypothetical protein
3903	 68.44	0	3872978..3873652	-	224	126451670	-	BURPS1106A_3968	-	putative lipoprotein
3904	 64.57	0	3873661..3874089	-	142	126454833	-	BURPS1106A_3969	-	putative lipoprotein
3905	 65.49	0	3874149..3874826	-	225	126454523	-	BURPS1106A_3970	-	csgG family protein
3906	 76.92	+1	3874857..3874973	+	38	126453614	-	BURPS1106A_3971	-	hypothetical protein
3907	 71.60	0	3875044..3875448	-	134	126453214	-	BURPS1106A_3972	-	hypothetical protein
3908	 58.02	-1	3875469..3875792	-	107	126451564	-	BURPS1106A_3973	-	putative lipoprotein
3909	 68.61	0	3875859..3876680	+	273	126453109	-	BURPS1106A_3974	-	3-oxoadipate enol-lactone hydrolase family protein
3910	 68.77	0	3876733..3878538	-	601	126453360	-	BURPS1106A_3975	-	methyl-accepting chemotaxis protein
3911	 57.78	-1	3878537..3878671	+	44	126452430	-	BURPS1106A_3976	-	hypothetical protein
3912	 76.07	+1	3878694..3878810	-	38	126453794	-	BURPS1106A_3977	-	hypothetical protein
3913	 66.00	0	3878819..3880471	-	550	126453143	-	BURPS1106A_3978	-	FAD/FMN-containing dehydrogenases
3914	 62.33	0	3880669..3881313	-	214	126454236	-	BURPS1106A_3979	-	chitin-binding domain-containing protein
3915	 61.03	-1	3881826..3882038	-	70	126455281	-	BURPS1106A_3980	-	putative lipoprotein
3916	 65.46	0	3882213..3882461	-	82	126454469	-	BURPS1106A_3981	-	hypothetical protein
3917	 60.28	-1	3882618..3883697	-	359	126451869	-	BURPS1106A_3982	-	gp30
3918	 58.12	-1	3884286..3884402	+	38	126452746	-	BURPS1106A_3983	-	hypothetical protein
3919	 62.50	0	3884750..3885853	+	367	126454109	-	BURPS1106A_3984	-	transposase, IS4
3920	 47.95	-2	3886560..3887168	-	202	126455444	-	BURPS1106A_3985	-	hypothetical protein
3921	 60.31	-1	3888174..3888692	-	172	126452367	-	BURPS1106A_3986	-	phage integrase family site specific recombinase
3922	 65.15	0	3888582..3888713	+	43	126455041	-	BURPS1106A_3987	-	hypothetical protein
3923	 69.22	0	3889944..3890843	+	299	126452755	-	BURPS1106A_3990	-	cytochrome c family protein
3924	 67.52	0	3890827..3890943	-	38	126453740	-	BURPS1106A_3989	-	hypothetical protein
3925	 65.18	0	3891166..3893253	-	695	126451499	-	BURPS1106A_3991	-	ATP-dependent DNA helicase Rep
3926	 74.47	+1	3893551..3894345	+	264	126454610	-	BURPS1106A_3992	-	hypothetical protein
3927	 76.33	+1	3894411..3895145	+	244	126453193	-	BURPS1106A_3993	-	lipolytic enzyme, G-D-S-L
3928	 70.09	0	3895667..3896719	+	350	126452354	-	BURPS1106A_3994	-	oxidoreductase YdgJ
3929	 71.00	0	3896951..3897250	+	99	126453262	-	BURPS1106A_3995	-	hypothetical protein
3930	 66.03	0	3897737..3898207	-	156	126453418	-	BURPS1106A_3996	-	hypothetical protein
3931	 68.54	0	3898169..3899287	+	372	126451834	gcvT	BURPS1106A_3997	-	glycine cleavage system aminomethyltransferase T
3932	 64.83	0	3899381..3899761	+	126	126455193	gcvH	BURPS1106A_3998	-	glycine cleavage system H protein
3933	 68.80	0	3900507..3903419	+	970	126451827	gcvP	BURPS1106A_4000	-	glycine dehydrogenase
3934	 71.43	0	3903410..3903535	-	41	126452462	-	BURPS1106A_3999	-	hypothetical protein
3935	 70.51	0	3903571..3904689	+	372	126452219	-	BURPS1106A_4001	-	hypothetical protein
3936	 68.75	0	3904723..3906111	+	462	126453584	sdaA	BURPS1106A_4002	-	L-serine ammonia-lyase
3937	 68.87	0	3906146..3907282	-	378	126453001	-	BURPS1106A_4003	-	hypothetical protein
3938	 71.83	0	3907551..3909254	+	567	126452150	-	BURPS1106A_4004	-	acetolactate synthase 2 catalytic subunit
3939	 71.82	0	3909283..3910350	+	355	126455275	-	BURPS1106A_4005	-	hypothetical protein
3940	 73.28	+1	3910469..3911497	-	342	126452825	eutR	BURPS1106A_4006	-	ethanolamine operon transcriptional activator EutR
3941	 70.00	0	3911541..3911720	-	59	126454770	-	BURPS1106A_4007	-	CarR
3942	 66.67	0	3911694..3913313	+	539	126454114	eutE	BURPS1106A_4008	-	acetaldehyde dehydrogenase (acetylating)
3943	 75.20	+1	3913578..3913823	-	81	126452440	-	BURPS1106A_4009	-	hypothetical protein
3944	 73.26	+1	3913889..3914692	-	267	126451878	eutC	BURPS1106A_4010	-	ethanolamine ammonia-lyase small subunit
3945	 68.03	0	3914689..3916086	-	465	126455070	eutB	BURPS1106A_4011	-	ethanolamine ammonia-lyase, large subunit
3946	 67.80	0	3916143..3917552	-	469	126454164	-	BURPS1106A_4012	-	putative ethanolamine permease
3947	 66.27	0	3917642..3917893	-	83	126453590	-	BURPS1106A_4013	-	hypothetical protein
3948	 69.80	0	3918170..3919348	+	392	126452192	-	BURPS1106A_4014	-	putative acyltransferase
3949	 77.05	+1	3919388..3919570	+	60	126451888	-	BURPS1106A_4015	-	hypothetical protein
3950	 65.94	0	3919721..3921232	-	503	126455069	-	BURPS1106A_4016	-	hypothetical protein
3951	 72.18	0	3921703..3922119	-	138	126451919	-	BURPS1106A_4017	-	hypothetical protein
3952	 73.91	+1	3922121..3922534	-	137	126452799	-	BURPS1106A_4018	-	hypothetical protein
3953	 71.99	0	3922547..3925045	-	832	126454461	cadA	BURPS1106A_4019	-	cadmium-translocating P-type ATPase
3954	 63.19	0	3925128..3925559	+	143	126451581	cadR	BURPS1106A_4020	-	transcriptional regulator CadR
3955	 67.29	0	3925659..3926300	+	213	126452274	-	BURPS1106A_4021	-	PadR family transcriptional regulator
3956	 67.97	0	3926359..3926511	-	50	126453432	-	BURPS1106A_4022	-	hypothetical protein
3957	 72.01	0	3926496..3926888	-	130	126455150	-	BURPS1106A_4023	-	FAD linked oxidase
3958	 75.58	+1	3926897..3927199	-	100	126452302	-	BURPS1106A_4024	-	FAD linked oxidase
3959	 67.55	0	3927308..3928102	-	264	126452725	-	BURPS1106A_4025	-	putative lysine-arginine-ornithine-binding periplasmic protein
3960	 69.35	0	3928156..3929310	-	384	126454689	-	BURPS1106A_4026	-	putative aminotransferase
3961	 70.05	0	3929435..3930055	-	206	126451962	-	BURPS1106A_4027	-	hypothetical protein
3962	 69.87	0	3930099..3930785	-	228	126451921	-	BURPS1106A_4028	-	TetR family transcriptional regulator
3963	 71.36	0	3930835..3932475	+	546	126454558	-	BURPS1106A_4029	-	acyl-CoA dehydrogenase domain-containing protein
3964	 71.38	0	3932592..3934139	+	515	126453646	fcs	BURPS1106A_4030	-	feruloyl-CoA synthetase
3965	 64.91	0	3934379..3935518	-	379	126451657	-	BURPS1106A_4031	-	putative periplasmic substrate-binding protein
3966	 70.25	0	3935603..3939532	-	1309	126455316	putA	BURPS1106A_4032	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.