IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3834	 69.43	0	3807876..3808454	-	192	126452382	gmhA	BURPS1106A_3899	-	phosphoheptose isomerase
3835	 74.48	+1	3808577..3809011	-	144	126453291	-	BURPS1106A_3900	-	hypothetical protein
3836	 70.27	0	3809058..3809945	+	295	126455349	-	BURPS1106A_3901	-	tetrapyrrole methylase family protein
3837	 66.04	0	3810040..3810675	-	211	126451953	-	BURPS1106A_3902	-	rare lipoprotein A family protein
3838	 68.37	0	3811276..3811920	+	214	126452838	-	BURPS1106A_3903	-	metallo-beta-lactamase family protein
3839	 67.43	0	3811917..3812573	+	218	126453741	-	BURPS1106A_3904	-	hypothetical protein
3840	 49.12	-2	3812533..3812646	+	37	126452937	-	BURPS1106A_3905	-	hypothetical protein
3841	 63.40	0	3812664..3813122	+	152	126453799	-	BURPS1106A_3906	-	AsnC family transcriptional regulator
3842	 65.99	0	3813301..3814491	-	396	126454165	-	BURPS1106A_3907	-	cation efflux family protein
3843	 46.15	-2	3814482..3814637	+	51	126455065	-	BURPS1106A_3908	-	hypothetical protein
3844	 60.20	-1	3814731..3815024	-	97	126454120	-	BURPS1106A_3909	-	H-NS histone family protein
3845	 69.75	0	3815409..3816089	-	226	126455048	-	BURPS1106A_3910	-	pyridoxamine 5'-phosphate oxidase family protein
3846	 73.12	+1	3816402..3817610	+	402	126452345	-	BURPS1106A_3911	-	putative amino acid ABC transporter, permease protein
3847	 64.65	0	3817799..3818941	-	380	126453227	-	BURPS1106A_3912	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
3848	 72.75	0	3819397..3820497	-	366	126453588	-	BURPS1106A_3913	-	2-nitropropane dioxygenase family oxidoreductase
3849	 63.77	0	3820494..3820700	-	68	126454491	-	BURPS1106A_3914	-	hypothetical protein
3850	 69.26	0	3820824..3821516	+	230	126452818	-	BURPS1106A_3915	-	dienelactone hydrolase family protein
3851	 72.84	0	3821548..3823101	+	517	126453790	-	BURPS1106A_3916	-	amidase family protein
3852	 67.03	0	3823285..3824115	-	276	126454447	metF	BURPS1106A_3917	-	5,10-methylenetetrahydrofolate reductase
3853	 60.17	-1	3824133..3824486	-	117	126452048	-	BURPS1106A_3918	-	hypothetical protein
3854	 64.14	0	3824650..3826071	-	473	126452762	ahcY	BURPS1106A_3919	-	S-adenosyl-L-homocysteine hydrolase
3855	 65.33	0	3826111..3826260	+	49	126455246	-	BURPS1106A_3920	-	hypothetical protein
3856	 66.67	0	3826425..3827159	-	244	126454531	fliA	BURPS1106A_3921	-	flagellar biosynthesis sigma factor
3857	 73.80	+1	3827181..3827993	-	270	126452975	-	BURPS1106A_3922	-	putative flagellar protein
3858	 71.58	0	3827986..3829737	-	583	126454275	flhF	BURPS1106A_3923	-	flagellar biosynthesis regulator FlhF
3859	 66.95	0	3829734..3831836	-	700	126454729	flhA	BURPS1106A_3924	-	flagellar biosynthesis protein FlhA
3860	 69.15	0	3831833..3833038	-	401	126454601	flhB	BURPS1106A_3925	-	flagellar biosynthesis protein FlhB
3861	 67.66	0	3833746..3834246	-	166	126451916	-	BURPS1106A_3926	-	3-demethylubiquinone-9 3-methyltransferase family protein
3862	 69.35	0	3834433..3835737	-	434	126452804	-	BURPS1106A_3927	-	putative lipoprotein
3863	 72.62	0	3835760..3836263	-	167	126453527	-	BURPS1106A_3928	-	hypothetical protein
3864	 67.51	0	3836461..3837171	-	236	126454708	cheZ	BURPS1106A_3929	-	chemotaxis regulator CheZ
3865	 62.12	-1	3837191..3837586	-	131	126452271	-	BURPS1106A_3930	-	chemotaxis protein CheY
3866	 68.58	0	3837935..3839029	-	364	126452993	cheB	BURPS1106A_3931	-	chemotaxis-specific methylesterase
3867	 69.08	0	3839035..3839739	-	234	126454009	cheD	BURPS1106A_3932	-	chemoreceptor glutamine deamidase CheD
3868	 67.62	0	3839736..3840683	-	315	126451760	cheR	BURPS1106A_3933	-	chemotaxis protein methyltransferase CheR
3869	 71.71	0	3840687..3842708	-	673	126452850	-	BURPS1106A_3934	-	methyl-accepting chemotaxis protein
3870	 63.83	0	3842749..3843276	-	175	126451858	cheW	BURPS1106A_3935	-	chemotaxis protein CheW
3871	 70.89	0	3843307..3845604	-	765	126454963	cheA	BURPS1106A_3936	-	chemotaxis protein CheA
3872	 66.67	0	3845636..3846016	-	126	126454141	cheY	BURPS1106A_3937	-	chemotaxis protein CheY
3873	 67.55	0	3846047..3847069	-	340	126452767	motB	BURPS1106A_3938	-	flagellar motor protein MotB
3874	 65.39	0	3847086..3847946	-	286	126451764	-	BURPS1106A_3939	-	flagellar motor protein MotA
3875	 63.77	0	3848140..3848691	-	183	126455028	flhC	BURPS1106A_3940	-	transcriptional activator FlhC
3876	 64.17	0	3848785..3849105	-	106	126454127	flhD	BURPS1106A_3941	-	transcriptional activator FlhD
3877	 65.54	0	3849699..3850763	+	354	126454318	-	BURPS1106A_3942	-	glycosyl transferase, group 1 family protein
3878	 65.32	0	3850867..3851163	-	98	126453196	-	BURPS1106A_3943	-	H-NS histone family protein
3879	 49.76	-2	3851062..3851268	+	68	126454592	-	BURPS1106A_3944	-	hypothetical protein
3880	 68.79	0	3851469..3852173	+	234	126455312	aqpZ	BURPS1106A_3945	-	aquaporin Z
3881	 65.09	0	3852362..3853183	-	273	126455443	-	BURPS1106A_3946	-	HAD family hydrolase
3882	 74.68	+1	3853303..3854238	-	311	126454335	-	BURPS1106A_3947	-	BadF/BadG/BcrA/BcrD ATPase family protein
3883	 65.68	0	3854344..3854952	+	202	126453188	tag	BURPS1106A_3948	-	DNA-3-methyladenine glycosidase I
3884	 73.49	+1	3855087..3855335	+	82	126452769	-	BURPS1106A_3949	-	hypothetical protein
3885	 60.23	-1	3855339..3855602	-	87	126454796	rpsU	BURPS1106A_3950	-	30S ribosomal protein S21
3886	 68.25	0	3855788..3855913	-	41	126453888	-	BURPS1106A_3951	-	hypothetical protein
3887	 65.47	0	3856109..3857275	+	388	126452490	fliC	BURPS1106A_3952	-	flagellin
3888	 67.26	0	3857425..3858945	+	506	126451618	fliD	BURPS1106A_3953	-	flagellar hook-associated protein
3889	 65.08	0	3858959..3859273	+	104	126452338	-	BURPS1106A_3954	-	hypothetical protein
3890	 68.64	0	3859496..3861826	+	776	126452788	-	BURPS1106A_3955	-	TPR repeat-containing protein
3891	 64.49	0	3861823..3862971	+	382	126453649	-	BURPS1106A_3956	-	aminotransferase
3892	 68.50	0	3862968..3864002	+	344	126454553	-	BURPS1106A_3957	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase III
3893	 64.41	0	3864014..3864235	+	73	126453659	-	BURPS1106A_3958	-	putative acyl carrier protein
3894	 69.30	0	3864238..3865302	+	354	126454521	fabH	BURPS1106A_3959	-	3-oxoacyl-(acyl-carrier-protein) synthase III
3895	 73.78	+1	3865305..3866063	+	252	126455374	-	BURPS1106A_3960	-	short chain dehydrogenase/reductase family oxidoreductase
3896	 68.56	0	3866063..3866695	+	210	126452282	-	BURPS1106A_3961	-	hexapeptide repeat-containing transferase
3897	 65.26	0	3866697..3867761	+	354	126453073	-	BURPS1106A_3962	-	Rieske family iron-sulfur cluster-binding protein
3898	 55.15	-2	3867841..3868578	-	245	126453972	-	BURPS1106A_3963	-	hypothetical protein
3899	 61.62	-1	3868903..3869814	-	303	126455194	-	BURPS1106A_3964	-	hypothetical protein
3900	 69.55	0	3869861..3870484	+	207	126453398	-	BURPS1106A_3965	-	LysE family translocator protein
3901	 69.13	0	3870785..3872446	-	553	126455011	acpA	BURPS1106A_3966	-	acid phosphatase AcpA
3902	 68.90	0	3872443..3872934	-	163	126454091	-	BURPS1106A_3967	-	hypothetical protein
3903	 68.44	0	3872978..3873652	-	224	126451670	-	BURPS1106A_3968	-	putative lipoprotein
3904	 64.57	0	3873661..3874089	-	142	126454833	-	BURPS1106A_3969	-	putative lipoprotein
3905	 65.49	0	3874149..3874826	-	225	126454523	-	BURPS1106A_3970	-	csgG family protein
3906	 76.92	+1	3874857..3874973	+	38	126453614	-	BURPS1106A_3971	-	hypothetical protein
3907	 71.60	0	3875044..3875448	-	134	126453214	-	BURPS1106A_3972	-	hypothetical protein
3908	 58.02	-1	3875469..3875792	-	107	126451564	-	BURPS1106A_3973	-	putative lipoprotein
3909	 68.61	0	3875859..3876680	+	273	126453109	-	BURPS1106A_3974	-	3-oxoadipate enol-lactone hydrolase family protein
3910	 68.77	0	3876733..3878538	-	601	126453360	-	BURPS1106A_3975	-	methyl-accepting chemotaxis protein
3911	 57.78	-1	3878537..3878671	+	44	126452430	-	BURPS1106A_3976	-	hypothetical protein
3912	 76.07	+1	3878694..3878810	-	38	126453794	-	BURPS1106A_3977	-	hypothetical protein
3913	 66.00	0	3878819..3880471	-	550	126453143	-	BURPS1106A_3978	-	FAD/FMN-containing dehydrogenases
3914	 62.33	0	3880669..3881313	-	214	126454236	-	BURPS1106A_3979	-	chitin-binding domain-containing protein
3915	 61.03	-1	3881826..3882038	-	70	126455281	-	BURPS1106A_3980	-	putative lipoprotein
3916	 65.46	0	3882213..3882461	-	82	126454469	-	BURPS1106A_3981	-	hypothetical protein
3917	 60.28	-1	3882618..3883697	-	359	126451869	-	BURPS1106A_3982	-	gp30
3918	 58.12	-1	3884286..3884402	+	38	126452746	-	BURPS1106A_3983	-	hypothetical protein
3919	 62.50	0	3884750..3885853	+	367	126454109	-	BURPS1106A_3984	-	transposase, IS4
3920	 47.95	-2	3886560..3887168	-	202	126455444	-	BURPS1106A_3985	-	hypothetical protein
3921	 60.31	-1	3888174..3888692	-	172	126452367	-	BURPS1106A_3986	-	phage integrase family site specific recombinase
3922	 65.15	0	3888582..3888713	+	43	126455041	-	BURPS1106A_3987	-	hypothetical protein
3923	 69.22	0	3889944..3890843	+	299	126452755	-	BURPS1106A_3990	-	cytochrome c family protein
3924	 67.52	0	3890827..3890943	-	38	126453740	-	BURPS1106A_3989	-	hypothetical protein
3925	 65.18	0	3891166..3893253	-	695	126451499	-	BURPS1106A_3991	-	ATP-dependent DNA helicase Rep
3926	 74.47	+1	3893551..3894345	+	264	126454610	-	BURPS1106A_3992	-	hypothetical protein
3927	 76.33	+1	3894411..3895145	+	244	126453193	-	BURPS1106A_3993	-	lipolytic enzyme, G-D-S-L
3928	 70.09	0	3895667..3896719	+	350	126452354	-	BURPS1106A_3994	-	oxidoreductase YdgJ
3929	 71.00	0	3896951..3897250	+	99	126453262	-	BURPS1106A_3995	-	hypothetical protein
3930	 66.03	0	3897737..3898207	-	156	126453418	-	BURPS1106A_3996	-	hypothetical protein
3931	 68.54	0	3898169..3899287	+	372	126451834	gcvT	BURPS1106A_3997	-	glycine cleavage system aminomethyltransferase T
3932	 64.83	0	3899381..3899761	+	126	126455193	gcvH	BURPS1106A_3998	-	glycine cleavage system H protein
3933	 68.80	0	3900507..3903419	+	970	126451827	gcvP	BURPS1106A_4000	-	glycine dehydrogenase
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.