IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3742	 61.15	-1	3700854..3701270	-	138	126451996	rplP	BURPS1106A_3797	-	50S ribosomal protein L16
3743	 63.05	0	3701273..3702073	-	266	126452567	rpsC	BURPS1106A_3798	-	30S ribosomal protein S3
3744	 59.39	-1	3702085..3702414	-	109	126453662	rplV	BURPS1106A_3799	-	50S ribosomal protein L22
3745	 56.52	-2	3702427..3702702	-	91	126452243	rpsS	BURPS1106A_3800	-	30S ribosomal protein S19
3746	 66.43	0	3702713..3703540	-	275	126453402	rplB	BURPS1106A_3801	-	50S ribosomal protein L2
3747	 56.19	-2	3703543..3703857	-	104	126451802	rplW	BURPS1106A_3802	-	50S ribosomal protein L23
3748	 61.03	-1	3703854..3704474	-	206	126454667	rplD	BURPS1106A_3803	-	50S ribosomal protein L4
3749	 62.65	0	3704474..3705145	-	223	126453776	rplC	BURPS1106A_3804	-	50S ribosomal protein L3
3750	 62.18	-1	3705321..3705632	-	103	126455037	rpsJ	BURPS1106A_3805	-	30S ribosomal protein S10
3751	 63.06	0	3705785..3706975	-	396	126455227	tuf	BURPS1106A_3806	-	elongation factor Tu
3752	 62.10	-1	3707017..3709119	-	700	126454030	fusA	BURPS1106A_3807	-	elongation factor G
3753	 60.08	-1	3709241..3709711	-	156	126451450	rpsG	BURPS1106A_3808	-	30S ribosomal protein S7
3754	 61.68	-1	3709882..3710262	-	126	126454808	rpsL	BURPS1106A_3809	-	30S ribosomal protein S12
3755	 67.91	0	3710478..3712325	-	615	126454768	recQ	BURPS1106A_3810	-	ATP-dependent DNA helicase RecQ
3756	 63.04	0	3712365..3712502	+	45	126452966	-	BURPS1106A_3812	-	hypothetical protein
3757	 57.42	-1	3712465..3712821	-	118	126453895	-	BURPS1106A_3811	-	ISBma1, transposase
3758	 56.70	-2	3712705..3712995	+	96	126452117	-	BURPS1106A_3813	-	transposase A
3759	 62.46	0	3712989..3713843	+	284	126454596	-	BURPS1106A_3814	-	transposase B
3760	 64.14	0	3715051..3719289	-	1412	126453433	rpoC	BURPS1106A_3815	-	DNA-directed RNA polymerase subunit beta'
3761	 63.01	0	3719311..3723417	-	1368	126454290	rpoB	BURPS1106A_3816	-	DNA-directed RNA polymerase subunit beta
3762	 60.53	-1	3723781..3724155	-	124	126455177	rplL	BURPS1106A_3817	-	50S ribosomal protein L7/L12
3763	 60.54	-1	3724219..3724773	-	184	126451769	rplJ	BURPS1106A_3818	-	50S ribosomal protein L10
3764	 65.24	0	3725014..3725712	-	232	126452892	rplA	BURPS1106A_3819	-	50S ribosomal protein L1
3765	 61.81	-1	3725713..3726144	-	143	126453465	rplK	BURPS1106A_3820	-	50S ribosomal protein L11
3766	 60.22	-1	3726290..3726847	-	185	126454654	nusG	BURPS1106A_3821	-	transcription antitermination protein NusG
3767	 55.91	-2	3726849..3727229	-	126	126455126	secE	BURPS1106A_3822	-	preprotein translocase subunit SecE
3768	 63.22	0	3727407..3728597	-	396	126453973	tuf	BURPS1106A_3824	-	elongation factor Tu
3769	 57.02	-1	3729120..3729233	-	37	126453522	-	BURPS1106A_3828	-	hypothetical protein
3770	 45.30	-2	3735113..3735229	-	38	126451785	-	BURPS1106A_3834	-	hypothetical protein
3771	 70.42	0	3735596..3736873	-	425	126454674	-	BURPS1106A_3835	-	GDSL-like lipase/acylhydrolase domain-containing protein
3772	 65.77	0	3737470..3738468	+	332	126453514	paaG	BURPS1106A_3836	-	phenylacetate-CoA oxygenase subunit PaaA
3773	 62.87	0	3738474..3738815	+	113	126454357	paaH	BURPS1106A_3837	-	phenylacetate-CoA oxygenase subunit PaaB
3774	 68.03	0	3738826..3739629	+	267	126453197	paaI	BURPS1106A_3838	-	phenylacetate-CoA oxygenase, PaaI subunit
3775	 74.07	+1	3739665..3740285	+	206	126452809	paaJ	BURPS1106A_3839	-	phenylacetate-CoA oxygenase, PaaJ subunit
3776	 67.86	0	3740287..3741375	+	362	126453980	paaK	BURPS1106A_3840	-	phenylacetate-CoA oxygenase/reductase, PaaK subunit
3777	 70.76	0	3741497..3742327	+	276	126455139	-	BURPS1106A_3841	-	hypothetical protein
3778	 65.33	0	3742354..3742953	+	199	126452603	-	BURPS1106A_3842	-	TetR family transcriptional regulator
3779	 65.74	0	3743195..3743842	+	215	126453419	-	BURPS1106A_3843	-	acetyltransferase
3780	 65.31	0	3743960..3744475	-	171	126452877	-	BURPS1106A_3844	-	putative leucine-responsive regulatory protein
3781	 63.21	0	3744627..3745724	+	365	126455066	hppD	BURPS1106A_3845	-	4-hydroxyphenylpyruvate dioxygenase
3782	 67.18	0	3745960..3746154	-	64	126452222	-	BURPS1106A_3846	-	hypothetical protein
3783	 68.17	0	3746474..3750055	+	1193	126453324	-	BURPS1106A_3847	-	indolepyruvate ferredoxin oxidoreductase
3784	 68.29	0	3750075..3750197	+	40	126454259	-	BURPS1106A_3848	-	AraC family transcriptional regulator
3785	 67.06	0	3750582..3752852	-	756	126455382	-	BURPS1106A_3849	-	malic enzyme
3786	 71.54	0	3753037..3753282	-	81	126452171	-	BURPS1106A_3850	-	hypothetical protein
3787	 64.19	0	3753382..3754068	+	228	126453832	pyrE	BURPS1106A_3851	-	orotate phosphoribosyltransferase
3788	 71.88	0	3754391..3754966	+	191	126454897	-	BURPS1106A_3852	-	putative phosphatidylethanolamine-binding protein
3789	 63.78	0	3755067..3755378	-	103	126451528	-	BURPS1106A_3853	-	hypothetical protein
3790	 68.58	0	3755352..3755927	+	191	126451885	-	BURPS1106A_3854	-	tryptophan repressor binding protein
3791	 68.15	0	3756080..3757024	+	314	126452121	argC	BURPS1106A_3855	-	N-acetyl-gamma-glutamyl-phosphate reductase
3792	 69.36	0	3757499..3758872	+	457	126453585	-	BURPS1106A_3856	-	hypothetical protein
3793	 67.31	0	3758998..3760248	+	416	126454448	-	BURPS1106A_3857	-	putative lipoprotein
3794	 65.94	0	3760268..3761098	+	276	126452380	-	BURPS1106A_3858	-	ompW family protein
3795	 72.10	0	3761285..3762223	-	312	126453308	-	BURPS1106A_3859	-	LysR family transcriptional regulator
3796	 74.94	+1	3762259..3763587	+	442	126454719	-	BURPS1106A_3860	-	major facilitator transporter
3797	 68.61	0	3763678..3764346	-	222	126455096	-	BURPS1106A_3861	-	LysE family translocator protein
3798	 70.92	0	3764445..3765314	-	289	126452510	-	BURPS1106A_3862	-	dehydrogenase
3799	 68.78	0	3765441..3766196	+	251	126453915	-	BURPS1106A_3863	-	hypothetical protein
3800	 64.07	0	3766361..3766591	-	76	126451865	-	BURPS1106A_3864	-	hypothetical protein
3801	 59.67	-1	3766812..3767426	-	204	126452624	-	BURPS1106A_3865	-	hypothetical protein
3802	 58.33	-1	3767419..3767538	-	39	126454098	-	BURPS1106A_3866	-	hypothetical protein
3803	 58.91	-1	3767555..3767683	+	42	126454763	-	BURPS1106A_3867	-	hypothetical protein
3804	 69.36	0	3767644..3768051	+	135	126452472	-	BURPS1106A_3868	-	putative lipoprotein
3805	 56.14	-2	3768841..3768954	-	37	126451608	-	BURPS1106A_3869	-	hypothetical protein
3806	 60.98	-1	3769106..3769228	-	40	126454773	-	BURPS1106A_3870	-	hypothetical protein
3807	 65.41	0	3769260..3769577	-	105	126453779	-	BURPS1106A_3871	-	hypothetical protein
3808	 57.89	-1	3769546..3769659	+	37	126453152	-	BURPS1106A_3872	-	hypothetical protein
3809	 71.21	0	3769872..3770069	-	65	126454739	-	BURPS1106A_3873	-	hypothetical protein
3810	 64.39	0	3770092..3771498	+	468	126452964	-	BURPS1106A_3874	-	amino acid permease
3811	 51.28	-2	3771636..3771752	-	38	126453835	-	BURPS1106A_3875	-	hypothetical protein
3812	 56.25	-2	3771946..3772233	+	95	126455054	-	BURPS1106A_3876	-	hypothetical protein
3813	 61.75	-1	3773007..3773840	-	277	126454182	-	BURPS1106A_3877	-	A, transposase OrfB
3814	 57.20	-1	3773864..3774127	-	87	126453330	-	BURPS1106A_3878	-	transposase subfamily protein
3815	 60.56	-1	3774386..3776071	-	561	126454471	-	BURPS1106A_3879	-	outer membrane hemolysin activator protein
3816	 62.20	-1	3776738..3786217	-	3159	126454501	-	BURPS1106A_3880	-	polymorphic membrane protein, filamentous haemagglutinin/adhesin
3817	 49.37	-2	3787047..3787445	+	132	126453615	-	BURPS1106A_3881	-	hypothetical protein
3818	 56.70	-2	3787780..3788070	+	96	126452747	-	BURPS1106A_3882	-	transposase A
3819	 62.46	0	3788064..3788918	+	284	126451829	-	BURPS1106A_3883	-	transposase B
3820	 55.14	-2	3788943..3789419	-	158	126453245	-	BURPS1106A_3884	-	hypothetical protein
3821	 56.70	-2	3790351..3790641	+	96	126452348	-	BURPS1106A_3885	-	transposase A
3822	 62.46	0	3790635..3791489	+	284	126454964	-	BURPS1106A_3886	-	transposase B
3823	 55.15	-2	3791874..3793514	+	546	126454822	-	BURPS1106A_3887	-	hypothetical protein
3824	 55.54	-2	3793511..3795406	+	631	126454559	-	BURPS1106A_3888	-	hypothetical protein
3825	 62.41	0	3795730..3796833	+	367	126453671	-	BURPS1106A_3889	-	transposase, IS4
3826	 59.15	-1	3797130..3798020	+	296	126453265	-	BURPS1106A_3890	-	hypothetical protein
3827	 62.31	0	3798020..3801670	+	1216	126452359	-	BURPS1106A_3891	-	helicase, C-terminal:dead/deah box helicase, n-terminal
3828	 63.67	0	3801915..3802847	-	310	126454019	-	BURPS1106A_3892	-	integrase/recombinase
3829	 59.38	-1	3802876..3803259	-	127	126453151	-	BURPS1106A_3893	-	hypothetical protein
3830	 58.79	-1	3803256..3803636	-	126	126454200	-	BURPS1106A_3894	-	hypothetical protein
3831	 55.09	-2	3804128..3805138	-	336	126455017	-	BURPS1106A_3895	-	hypothetical protein
3832	 69.40	0	3806695..3807060	-	121	126454574	-	BURPS1106A_3897	-	cytochrome c family protein
3833	 68.54	0	3807057..3807857	-	266	126451459	-	BURPS1106A_3898	-	putative phospholipid-binding protein
3834	 69.43	0	3807876..3808454	-	192	126452382	gmhA	BURPS1106A_3899	-	phosphoheptose isomerase
3835	 74.48	+1	3808577..3809011	-	144	126453291	-	BURPS1106A_3900	-	hypothetical protein
3836	 70.27	0	3809058..3809945	+	295	126455349	-	BURPS1106A_3901	-	tetrapyrrole methylase family protein
3837	 66.04	0	3810040..3810675	-	211	126451953	-	BURPS1106A_3902	-	rare lipoprotein A family protein
3838	 68.37	0	3811276..3811920	+	214	126452838	-	BURPS1106A_3903	-	metallo-beta-lactamase family protein
3839	 67.43	0	3811917..3812573	+	218	126453741	-	BURPS1106A_3904	-	hypothetical protein
3840	 49.12	-2	3812533..3812646	+	37	126452937	-	BURPS1106A_3905	-	hypothetical protein
3841	 63.40	0	3812664..3813122	+	152	126453799	-	BURPS1106A_3906	-	AsnC family transcriptional regulator
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.