IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3556	 70.20	0	3515405..3515659	-	84	126453867	-	BURPS1106A_3610	-	hypothetical protein
3557	 77.24	+1	3515656..3515967	-	103	126452438	-	BURPS1106A_3611	-	hypothetical protein
3558	 78.21	+1	3516008..3516241	+	77	126453716	-	BURPS1106A_3612	-	hypothetical protein
3559	 68.43	0	3516253..3517557	+	434	126454338	hemA	BURPS1106A_3613	-	glutamyl-tRNA reductase
3560	 67.59	0	3517624..3518706	+	360	126454756	prfA	BURPS1106A_3614	-	peptide chain release factor 1
3561	 73.78	+1	3518750..3519607	+	285	126452796	hemK	BURPS1106A_3615	-	protein hemK
3562	 58.90	-1	3519687..3519995	+	102	126451940	-	BURPS1106A_3616	-	putative glutaredoxin
3563	 69.68	0	3520010..3520606	+	198	126452074	ubiX	BURPS1106A_3617	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
3564	 70.72	0	3520890..3521678	+	262	126455222	-	BURPS1106A_3618	-	class III extradiol-type catecholic dioxygenase family protein
3565	 65.36	0	3522051..3523652	-	533	126455377	-	BURPS1106A_3619	-	amino acid permease
3566	 59.33	-1	3523635..3523784	+	49	126454221	-	BURPS1106A_3620	-	hypothetical protein
3567	 56.86	-2	3524086..3524289	+	67	126452091	-	BURPS1106A_3622	-	cold-shock domain-contain protein
3568	 70.29	0	3524276..3524413	-	45	126453189	-	BURPS1106A_3621	-	hypothetical protein
3569	 69.28	0	3524476..3525738	-	420	126454041	-	BURPS1106A_3623	-	molecular chaperone, Hsp70 class
3570	 77.27	+1	3525862..3526059	+	65	126455179	-	BURPS1106A_3624	-	hypothetical protein
3571	 67.66	0	3526460..3527065	-	201	126452862	-	BURPS1106A_3625	-	nitroreductase family protein
3572	 70.66	0	3527027..3527602	+	191	126454702	-	BURPS1106A_3627	-	hypothetical protein
3573	 70.33	0	3527562..3528845	-	427	126451749	-	BURPS1106A_3626	-	major facilitator transporter
3574	 69.92	0	3529004..3529648	+	214	126453445	-	BURPS1106A_3628	-	TetR family transcriptional regulator
3575	 65.54	0	3530007..3530630	+	207	126453361	-	BURPS1106A_3629	-	hypothetical protein
3576	 66.45	0	3530722..3531624	-	300	126452223	-	BURPS1106A_3630	-	hypothetical protein
3577	 72.30	0	3531752..3532888	-	378	126455020	-	BURPS1106A_3631	-	putative methyltransferase
3578	 71.24	0	3532865..3533170	+	101	126452916	-	BURPS1106A_3632	-	hypothetical protein
3579	 65.24	0	3533245..3534363	-	372	126453052	-	BURPS1106A_3633	-	putative acyltransferase
3580	 74.58	+1	3534362..3534841	+	159	126454866	-	BURPS1106A_3635	-	hypothetical protein
3581	 69.25	0	3534801..3535304	-	167	126453495	-	BURPS1106A_3634	-	putative lipoprotein
3582	 35.09	-2	3535498..3535611	+	37	126452307	-	BURPS1106A_3636	-	hypothetical protein
3583	 64.22	0	3535908..3538073	+	721	126452967	-	BURPS1106A_3637	-	M1 family peptidase
3584	 63.91	0	3538655..3539053	+	132	126453497	-	BURPS1106A_3638	-	hypothetical protein
3585	 64.44	0	3539096..3539365	+	89	126455446	-	BURPS1106A_3639	-	hypothetical protein
3586	 64.07	0	3539468..3539698	+	76	126452670	-	BURPS1106A_3640	-	hypothetical protein
3587	 65.55	0	3539932..3540288	-	118	126451515	-	BURPS1106A_3641	-	hypothetical protein
3588	 67.30	0	3540314..3541582	+	422	126454853	-	BURPS1106A_3642	-	putative secretion protein
3589	 66.62	0	3541597..3543858	+	753	126453800	-	BURPS1106A_3643	-	putative toxin secretion ABC transporter, ATP-binding protein
3590	 68.79	0	3543888..3545303	+	471	126452663	-	BURPS1106A_3644	-	TolC family type I secretion outer membrane protein
3591	 62.67	0	3545288..3545437	+	49	126453820	-	BURPS1106A_3645	-	hypothetical protein
3592	 73.07	+1	3545513..3546481	-	322	126453523	-	BURPS1106A_3646	-	hypothetical protein
3593	 58.49	-1	3546493..3547458	+	321	126452417	-	BURPS1106A_3647	-	D-alanyl-D-alanine carboxypeptidase family protein
3594	 65.94	0	3547487..3547624	+	45	126453276	-	BURPS1106A_3648	-	hypothetical protein
3595	 64.04	0	3547609..3547722	+	37	126454205	-	BURPS1106A_3649	-	hypothetical protein
3596	 67.72	0	3547730..3551623	+	1297	126454823	-	BURPS1106A_3650	-	hypothetical protein
3597	 66.77	0	3551620..3552609	+	329	126453923	-	BURPS1106A_3651	-	hypothetical protein
3598	 70.31	0	3552614..3553546	+	310	126453039	-	BURPS1106A_3652	-	ompA family protein
3599	 69.70	0	3553745..3554866	-	373	126452090	-	BURPS1106A_3653	-	ImpA-related N-terminal family protein
3600	 68.76	0	3554956..3557625	-	889	126451777	-	BURPS1106A_3654	-	ClpA/B type protease
3601	 70.03	0	3557659..3558759	-	366	126454687	-	BURPS1106A_3655	-	hypothetical protein
3602	 66.94	0	3558723..3560561	-	612	126453567	-	BURPS1106A_3656	-	hypothetical protein
3603	 63.77	0	3560641..3561123	-	160	126452668	-	BURPS1106A_3657	-	hypothetical protein
3604	 61.71	-1	3561181..3561684	-	167	126451804	-	BURPS1106A_3658	-	hypothetical protein
3605	 62.98	0	3561757..3563247	-	496	126454940	-	BURPS1106A_3659	-	hypothetical protein
3606	 63.01	0	3563264..3563782	-	172	126455085	-	BURPS1106A_3660	-	hypothetical protein
3607	 72.33	0	3563819..3564454	-	211	126453290	-	BURPS1106A_3661	-	TPR repeat-containing protein
3608	 52.17	-2	3564616..3564753	-	45	126452377	-	BURPS1106A_3662	-	hypothetical protein
3609	 64.84	0	3564876..3565478	+	200	126455022	-	BURPS1106A_3663	-	putative lipoprotein
3610	 66.00	0	3565587..3566933	+	448	126453341	-	BURPS1106A_3664	-	hypothetical protein
3611	 64.12	0	3566930..3567715	+	261	126452435	-	BURPS1106A_3665	-	hypothetical protein
3612	 69.13	0	3567817..3568182	+	121	126453577	-	BURPS1106A_3666	-	phage tail completion protein
3613	 69.30	0	3569271..3569687	-	138	126451812	-	BURPS1106A_3667	-	DNA methylase
3614	 68.18	0	3569772..3569969	-	65	126452919	-	BURPS1106A_3668	-	bacteriophage tail protein I
3615	 69.72	0	3570176..3570502	-	108	126454262	-	BURPS1106A_3669	-	bacteriophage baseplate assembly protein J
3616	 62.36	0	3570789..3571949	-	386	126455202	-	BURPS1106A_3670	-	ISBma1, transposase
3617	 62.71	0	3572859..3573389	+	176	126453279	-	BURPS1106A_3671	-	hypothetical protein
3618	 60.69	-1	3574186..3575289	+	367	126454388	-	BURPS1106A_3672	-	gp31
3619	 55.08	-2	3575381..3577201	-	606	126453477	-	BURPS1106A_3673	-	hypothetical protein
3620	 62.77	0	3577817..3579688	-	623	126453871	-	BURPS1106A_3674	-	hypothetical protein
3621	 63.82	0	3579691..3583689	-	1332	126454020	-	BURPS1106A_3675	-	helicase, C-terminal
3622	 57.44	-1	3583686..3585311	-	541	126455130	-	BURPS1106A_3676	-	hypothetical protein
3623	 59.64	-1	3585308..3588439	-	1043	126453422	-	BURPS1106A_3677	-	helicase, C-terminal:dead/deah box helicase, n-terminal
3624	 63.18	0	3588455..3592840	-	1461	126454012	-	BURPS1106A_3678	-	hypothetical protein
3625	 54.87	-2	3593047..3593241	+	64	126454682	-	BURPS1106A_3679	-	hypothetical protein
3626	 62.87	0	3593469..3596606	-	1045	126452260	-	BURPS1106A_3680	-	SNF2-related:helicase, C-terminal
3627	 57.58	-1	3597115..3598149	-	344	126453573	-	BURPS1106A_3681	-	modification methylase HgiDII
3628	 56.35	-2	3598216..3598467	-	83	126454476	-	BURPS1106A_3682	-	prophage CP4-57 regulatory protein (AlpA)
3629	 61.82	-1	3599423..3600391	+	322	126455082	-	BURPS1106A_3683	-	hypothetical protein
3630	 63.79	0	3600561..3601463	+	300	126454464	-	BURPS1106A_3684	-	hypothetical protein
3631	 62.39	0	3601519..3601752	+	77	126451910	-	BURPS1106A_3685	-	hypothetical protein
3632	 62.70	0	3601781..3602713	+	310	126452753	-	BURPS1106A_3686	-	hypothetical protein
3633	 62.50	0	3603971..3605074	-	367	126454214	-	BURPS1106A_3687	-	transposase, IS4
3634	 60.00	-1	3605210..3605329	-	39	126453821	-	BURPS1106A_3688	-	hypothetical protein
3635	 58.98	-1	3605219..3606025	+	268	126454398	-	BURPS1106A_3689	-	hypothetical protein
3636	 61.67	-1	3606153..3606452	+	99	126451514	-	BURPS1106A_3690	-	Type I restriction-modification system methyltransferase subunit
3637	 61.24	-1	3606462..3606719	-	85	126452095	-	BURPS1106A_3691	-	XRE family transcriptional regulator
3638	 61.69	-1	3607235..3609004	+	589	126455225	-	BURPS1106A_3692	-	putative lipoprotein
3639	 58.90	-1	3609075..3609731	+	218	126453814	-	BURPS1106A_3693	-	putative lipoprotein
3640	 56.82	-2	3610808..3611203	-	131	126454874	-	BURPS1106A_3694	-	hypothetical protein
3641	 57.92	-1	3613308..3614393	-	361	126453747	-	BURPS1106A_3695	-	hypothetical protein
3642	 63.44	0	3614512..3615657	-	381	126453158	-	BURPS1106A_3696	-	hypothetical protein
3643	 61.53	-1	3615733..3617271	-	512	126452029	-	BURPS1106A_3697	-	TOPRIM
3644	 61.50	-1	3617281..3617493	-	70	126455261	-	BURPS1106A_3698	-	prophage CP4-57 regulatory protein (AlpA)
3645	 57.55	-1	3618449..3618799	-	116	126454628	-	BURPS1106A_3699	-	phage integrase
3646	 62.50	0	3618922..3620025	+	367	126453444	-	BURPS1106A_3700	-	transposase, IS4
3647	 60.17	-1	3620175..3621005	-	276	126454671	-	BURPS1106A_3701	-	phage integrase
3648	 64.75	0	3621298..3621819	-	173	126453519	sspB	BURPS1106A_3703	-	ClpXP protease specificity-enhancing factor
3649	 59.31	-1	3621889..3622500	-	203	126452854	sspA	BURPS1106A_3704	-	stringent starvation protein A
3650	 59.95	-1	3622593..3623351	-	252	126452047	petC	BURPS1106A_3705	-	ubiquinol-cytochrome c reductase, cytochrome c1
3651	 62.47	0	3623374..3624756	-	460	126453900	petB	BURPS1106A_3706	-	ubiquinol-cytochrome c reductase, cytochrome b
3652	 65.54	0	3624757..3625377	-	206	126454818	petA	BURPS1106A_3707	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
3653	 63.59	0	3625598..3626344	-	248	126451667	-	BURPS1106A_3708	-	NIF3 family protein
3654	 66.58	0	3626366..3627574	+	402	126452486	-	BURPS1106A_3709	-	serine protease
3655	 73.50	+1	3627612..3627845	-	77	126454343	-	BURPS1106A_3710	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.