IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3477	 65.53	0	3430331..3430594	-	87	126453547	rpmA	BURPS1106A_3525	-	50S ribosomal protein L27
3478	 56.09	-2	3430623..3430934	-	103	126454153	rplU	BURPS1106A_3526	-	50S ribosomal protein L21
3479	 63.36	0	3431150..3432148	+	332	126451455	ispB	BURPS1106A_3527	-	octaprenyl-diphosphate synthase
3480	 63.19	0	3432429..3433724	+	431	126453893	-	BURPS1106A_3530	-	putative transporter
3481	 75.82	+1	3433681..3433833	-	50	126451864	-	BURPS1106A_3529	-	hypothetical protein
3482	 72.14	0	3433860..3435083	+	407	126452463	pilB	BURPS1106A_3531	-	type IV pilus biogenesis protein PilB
3483	 72.50	0	3435080..3436297	+	405	126451673	pilC	BURPS1106A_3532	-	type IV pilus biogenesis protein PilC
3484	 70.27	0	3436342..3437256	+	304	126455285	pilD	BURPS1106A_3533	-	type IV prepilin leader peptidase
3485	 67.16	0	3437260..3437871	+	203	126453294	coaE	BURPS1106A_3534	-	dephospho-CoA kinase
3486	 62.83	0	3438020..3438775	+	251	126452426	-	BURPS1106A_3535	-	hypothetical protein
3487	 65.69	0	3438811..3439014	+	67	126451790	-	BURPS1106A_3536	-	hypothetical protein
3488	 68.22	0	3439150..3439599	-	149	126454135	-	BURPS1106A_3537	-	mutator mutT protein
3489	 65.06	0	3439596..3440465	-	289	126452940	-	BURPS1106A_3538	-	hypothetical protein
3490	 67.68	0	3440486..3441772	-	428	126455430	argJ	BURPS1106A_3539	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
3491	 65.56	0	3441882..3444677	-	931	126452459	secA	BURPS1106A_3540	-	preprotein translocase subunit SecA
3492	 69.34	0	3444863..3445423	+	186	126452626	-	BURPS1106A_3541	-	hypothetical protein
3493	 72.71	0	3445389..3445868	+	159	126454688	-	BURPS1106A_3542	-	hypothetical protein
3494	 63.73	0	3446259..3447176	-	305	126453520	lpxC	BURPS1106A_3543	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3495	 67.65	0	3447418..3447924	-	168	126454386	-	BURPS1106A_3544	-	anti-oxidant AhpCTSA family protein
3496	 67.84	0	3448110..3449306	-	398	126453087	ftsZ	BURPS1106A_3545	-	cell division protein FtsZ
3497	 65.45	0	3449415..3450647	-	410	126453508	ftsA	BURPS1106A_3546	-	cell division protein FtsA
3498	 67.73	0	3450674..3451426	-	250	126452609	ftsQ	BURPS1106A_3547	-	cell division protein FtsQ
3499	 66.99	0	3451447..3452385	-	312	126453261	ddlB	BURPS1106A_3548	-	D-alanine--D-alanine ligase B
3500	 70.39	0	3452387..3453784	-	465	126454974	murC	BURPS1106A_3549	-	UDP-N-acetylmuramate--L-alanine ligase
3501	 70.83	0	3453781..3454884	-	367	126451935	murG	BURPS1106A_3550	-	N-acetylglucosaminyl transferase
3502	 66.82	0	3455006..3456298	-	430	126452793	ftsW	BURPS1106A_3551	-	cell division protein FtsW
3503	 72.61	0	3456295..3457809	-	504	126453698	murD	BURPS1106A_3552	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
3504	 63.59	0	3457835..3459004	-	389	126454548	mraY	BURPS1106A_3553	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3505	 72.57	0	3459019..3460425	-	468	126451793	murF	BURPS1106A_3554	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
3506	 71.20	0	3460422..3461966	-	514	126452893	murE	BURPS1106A_3555	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3507	 65.64	0	3461963..3463807	-	614	126453513	-	BURPS1106A_3556	-	penicillin-binding protein
3508	 63.94	0	3463804..3464133	-	109	126454651	ftsL	BURPS1106A_3557	-	cell division protein FtsL
3509	 65.71	0	3464130..3465071	-	313	126454576	mraW	BURPS1106A_3558	-	S-adenosyl-methyltransferase MraW
3510	 62.94	0	3465095..3465523	-	142	126455248	mraZ	BURPS1106A_3559	-	cell division protein MraZ
3511	 66.83	0	3465911..3466537	-	208	126453836	-	BURPS1106A_3560	-	ubiquinone biosynthesis protein
3512	 64.51	0	3466818..3467978	+	386	126452945	-	BURPS1106A_3561	-	outer membrane porin
3513	 63.56	0	3468083..3469564	-	493	126451695	-	BURPS1106A_3562	-	transposase
3514	 64.46	0	3469807..3471480	-	557	126454261	-	BURPS1106A_3563	-	acyl-CoA synthetase
3515	 62.72	0	3471620..3473695	-	691	126453610	-	BURPS1106A_3564	-	molybdopterin oxidoreductase
3516	 45.30	-2	3479506..3479622	-	38	126452500	-	BURPS1106A_3570	-	hypothetical protein
3517	 50.00	-2	3479919..3480032	+	37	126452513	-	BURPS1106A_3572	-	hypothetical protein
3518	 62.64	0	3480019..3480813	-	264	126453436	-	BURPS1106A_3571	-	enoyl-CoA hydratase
3519	 66.43	0	3480926..3482632	+	568	126455462	paaN	BURPS1106A_3573	-	phenylacetic acid degradation protein paaN
3520	 72.33	0	3482706..3483923	+	405	126453966	pcaF	BURPS1106A_3574	-	beta-ketoadipyl CoA thiolase
3521	 66.04	0	3484019..3484810	+	263	126455171	paaB	BURPS1106A_3575	-	enoyl-CoA hydratase
3522	 65.20	0	3484812..3485288	+	158	126452791	paaD	BURPS1106A_3576	-	phenylacetic acid degradation protein PaaD
3523	 65.82	0	3485326..3486624	+	432	126453651	paaF	BURPS1106A_3577	-	phenylacetate-CoA ligase
3524	 68.70	0	3486952..3488229	-	425	126454532	mltA	BURPS1106A_3578	-	membrane-bound lytic murein transglycosylase A
3525	 64.53	0	3488287..3488661	-	124	126451550	apaG	BURPS1106A_3579	-	ApaG
3526	 70.95	0	3488587..3488796	+	69	126452695	-	BURPS1106A_3580	-	hypothetical protein
3527	 66.81	0	3488843..3489529	+	228	126453569	rpe	BURPS1106A_3581	-	ribulose-phosphate 3-epimerase
3528	 67.07	0	3489526..3490263	+	245	126454711	gph	BURPS1106A_3582	-	phosphoglycolate phosphatase
3529	 66.09	0	3490551..3492119	+	522	126452015	pabB	BURPS1106A_3583	-	anthranilate synthase component I
3530	 64.64	0	3492133..3492723	+	196	126452687	pabA	BURPS1106A_3584	-	anthranilate synthase component II
3531	 68.12	0	3492741..3493772	+	343	126453770	trpD	BURPS1106A_3585	-	anthranilate phosphoribosyltransferase
3532	 67.43	0	3493835..3494620	+	261	126454851	trpC	BURPS1106A_3586	-	indole-3-glycerol-phosphate synthase
3533	 73.46	+1	3494631..3495278	+	215	126451971	-	BURPS1106A_3587	-	adenylate cyclase
3534	 69.84	0	3495320..3496108	+	262	126453114	ung	BURPS1106A_3588	-	uracil-DNA glycosylase
3535	 66.39	0	3496327..3497040	-	237	126454382	azoR	BURPS1106A_3589	-	FMN-dependent NADH-azoreductase
3536	 69.67	0	3497062..3498891	-	609	126453535	-	BURPS1106A_3590	-	PDZ domain-containing protein
3537	 64.47	0	3498991..3499719	-	242	126454603	-	BURPS1106A_3591	-	putative thiol:disulfide interchange protein DsbC
3538	 72.34	0	3499821..3501002	-	393	126451886	-	BURPS1106A_3592	-	hypothetical protein
3539	 77.40	+1	3501049..3501225	-	58	126453064	-	BURPS1106A_3593	-	hypothetical protein
3540	 59.69	-1	3501317..3501445	+	42	126453983	-	BURPS1106A_3594	-	putative lipoprotein
3541	 64.48	0	3501876..3502241	+	121	126451583	-	BURPS1106A_3595	-	hypothetical protein
3542	 65.11	0	3502751..3503845	+	364	126452709	-	BURPS1106A_3596	-	translation-associated GTPase
3543	 68.54	0	3503956..3504168	-	70	126454341	-	BURPS1106A_3597	-	hypothetical protein
3544	 66.16	0	3504167..3504955	+	262	126454466	-	BURPS1106A_3598	-	putative NADH-quinone oxidoreductase, B subunit
3545	 71.58	0	3504969..3505802	+	277	126453751	-	BURPS1106A_3599	-	hypothetical protein
3546	 67.29	0	3505874..3507637	-	587	126454606	gabP	BURPS1106A_3600	-	GABA permease
3547	 70.14	0	3507782..3507925	-	47	126452999	-	BURPS1106A_3601	-	hypothetical protein
3548	 73.96	+1	3507943..3508422	-	159	126452806	-	BURPS1106A_3602	-	hypothetical protein
3549	 72.78	0	3508538..3509518	-	326	126455274	-	BURPS1106A_3603	-	glycerophosphoryl diester phosphodiesterase family protein
3550	 76.95	+1	3509697..3509978	+	93	126454820	-	BURPS1106A_3604	-	hypothetical protein
3551	 64.99	0	3510265..3511932	+	555	126454391	-	BURPS1106A_3606	-	putative ABC transporter ATP-binding protein
3552	 78.06	+1	3511911..3512147	-	78	126451495	-	BURPS1106A_3605	-	hypothetical protein
3553	 67.79	0	3512269..3512892	-	207	126452681	-	BURPS1106A_3607	-	HAD family hydrolase
3554	 71.71	0	3512889..3513602	-	237	126451568	-	BURPS1106A_3608	-	isochorismatase family protein
3555	 71.52	0	3513572..3515386	-	604	126454960	-	BURPS1106A_3609	-	M24 family metallopeptidase
3556	 70.20	0	3515405..3515659	-	84	126453867	-	BURPS1106A_3610	-	hypothetical protein
3557	 77.24	+1	3515656..3515967	-	103	126452438	-	BURPS1106A_3611	-	hypothetical protein
3558	 78.21	+1	3516008..3516241	+	77	126453716	-	BURPS1106A_3612	-	hypothetical protein
3559	 68.43	0	3516253..3517557	+	434	126454338	hemA	BURPS1106A_3613	-	glutamyl-tRNA reductase
3560	 67.59	0	3517624..3518706	+	360	126454756	prfA	BURPS1106A_3614	-	peptide chain release factor 1
3561	 73.78	+1	3518750..3519607	+	285	126452796	hemK	BURPS1106A_3615	-	protein hemK
3562	 58.90	-1	3519687..3519995	+	102	126451940	-	BURPS1106A_3616	-	putative glutaredoxin
3563	 69.68	0	3520010..3520606	+	198	126452074	ubiX	BURPS1106A_3617	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
3564	 70.72	0	3520890..3521678	+	262	126455222	-	BURPS1106A_3618	-	class III extradiol-type catecholic dioxygenase family protein
3565	 65.36	0	3522051..3523652	-	533	126455377	-	BURPS1106A_3619	-	amino acid permease
3566	 59.33	-1	3523635..3523784	+	49	126454221	-	BURPS1106A_3620	-	hypothetical protein
3567	 56.86	-2	3524086..3524289	+	67	126452091	-	BURPS1106A_3622	-	cold-shock domain-contain protein
3568	 70.29	0	3524276..3524413	-	45	126453189	-	BURPS1106A_3621	-	hypothetical protein
3569	 69.28	0	3524476..3525738	-	420	126454041	-	BURPS1106A_3623	-	molecular chaperone, Hsp70 class
3570	 77.27	+1	3525862..3526059	+	65	126455179	-	BURPS1106A_3624	-	hypothetical protein
3571	 67.66	0	3526460..3527065	-	201	126452862	-	BURPS1106A_3625	-	nitroreductase family protein
3572	 70.66	0	3527027..3527602	+	191	126454702	-	BURPS1106A_3627	-	hypothetical protein
3573	 70.33	0	3527562..3528845	-	427	126451749	-	BURPS1106A_3626	-	major facilitator transporter
3574	 69.92	0	3529004..3529648	+	214	126453445	-	BURPS1106A_3628	-	TetR family transcriptional regulator
3575	 65.54	0	3530007..3530630	+	207	126453361	-	BURPS1106A_3629	-	hypothetical protein
3576	 66.45	0	3530722..3531624	-	300	126452223	-	BURPS1106A_3630	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.