IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3397	 61.90	-1	3354764..3354952	-	62	126454757	-	BURPS1106A_3445	-	hypothetical protein
3398	 63.55	0	3355129..3355545	-	138	126452076	-	BURPS1106A_3446	-	hypothetical protein
3399	 68.99	0	3355569..3356945	-	458	126452456	proA	BURPS1106A_3447	-	gamma-glutamyl phosphate reductase
3400	 73.09	+1	3356977..3358065	-	362	126454183	holA	BURPS1106A_3448	-	DNA polymerase III subunit delta
3401	 67.93	0	3358111..3358662	-	183	126453606	-	BURPS1106A_3449	-	putative lipoprotein
3402	 66.63	0	3358704..3361298	-	864	126451947	leuS	BURPS1106A_3450	-	leucyl-tRNA synthetase
3403	 74.01	+1	3361473..3362003	-	176	126452234	-	BURPS1106A_3451	-	ExbD/TolR family transport energizing protein
3404	 74.01	+1	3362044..3362751	-	235	126455098	-	BURPS1106A_3452	-	MotA/TolQ/ExbB proton channel family protein
3405	 69.55	0	3362780..3363577	-	265	126453652	dapB	BURPS1106A_3453	-	dihydrodipicolinate reductase
3406	 73.61	+1	3363657..3364448	-	263	126452542	-	BURPS1106A_3454	-	SmpA/OmlA family lipoprotein
3407	 60.61	-1	3364602..3365030	+	142	126452758	fur	BURPS1106A_3455	-	ferric uptake regulator
3408	 72.19	0	3365153..3365677	-	174	126451609	allA	BURPS1106A_3456	-	ureidoglycolate hydrolase
3409	 70.33	0	3365691..3366701	-	336	161986642	-	BURPS1106A_3457	-	allantoicase
3410	 65.00	0	3366839..3368161	-	440	126452518	-	BURPS1106A_3458	-	C4-dicarboxylate transporter DctA
3411	 66.23	0	3368407..3369099	+	230	126455212	-	BURPS1106A_3459	-	GntR family transcriptional regulator
3412	 73.23	+1	3369110..3369505	+	131	126454042	-	BURPS1106A_3460	-	LysM repeat-containing protein
3413	 76.39	+1	3369554..3369697	-	47	126454037	-	BURPS1106A_3461	-	hypothetical protein
3414	 68.91	0	3369711..3370646	-	311	126452840	cynR	BURPS1106A_3462	-	DNA-binding transcriptional regulator CynR
3415	 70.00	0	3370761..3371420	+	219	126451676	cynT	BURPS1106A_3463	-	carbonic anhydrases
3416	 65.18	0	3371507..3371977	+	156	126454570	cynS	BURPS1106A_3464	-	cyanate hydratase
3417	 71.58	0	3372159..3373358	+	399	126454500	-	BURPS1106A_3465	-	major facilitator family transporter
3418	 72.98	+1	3373388..3373672	+	94	126453381	-	BURPS1106A_3466	-	hypothetical protein
3419	 64.00	0	3373766..3374776	-	336	126452201	gap	BURPS1106A_3467	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3420	 68.26	0	3374867..3376939	-	690	126454749	tkt	BURPS1106A_3468	-	transketolase
3421	 64.67	0	3377031..3377180	-	49	126453801	-	BURPS1106A_3469	-	hypothetical protein
3422	 69.46	0	3377157..3378014	+	285	126454202	speE	BURPS1106A_3470	-	spermidine synthase
3423	 66.91	0	3378054..3378470	+	138	126451733	-	BURPS1106A_3471	-	glyoxalase family protein
3424	 76.04	+1	3378467..3379234	+	255	126452434	-	BURPS1106A_3472	-	hypothetical protein
3425	 76.11	+1	3379244..3379423	-	59	126454440	-	BURPS1106A_3473	-	hypothetical protein
3426	 62.94	0	3379638..3380201	-	187	126455289	-	BURPS1106A_3474	-	barstar family protein
3427	 65.74	0	3380218..3380649	-	143	126452142	-	BURPS1106A_3475	-	guanyl-specific ribonuclease Sa
3428	 65.37	0	3380978..3383287	-	769	126453060	-	BURPS1106A_3476	-	malic enzyme
3429	 73.85	+1	3383489..3384490	+	333	126452891	thiL	BURPS1106A_3477	-	thiamine monophosphate kinase
3430	 67.80	0	3384480..3385097	+	205	126454812	-	BURPS1106A_3478	-	phosphatidylglycerophosphatase A
3431	 70.46	0	3385141..3385641	+	166	126451690	-	BURPS1106A_3479	-	cinA family protein
3432	 74.36	+1	3385725..3385841	-	38	126452534	-	BURPS1106A_3480	-	hypothetical protein
3433	 68.60	0	3385924..3386751	-	275	126453904	pyrF	BURPS1106A_3481	-	orotidine 5'-phosphate decarboxylase
3434	 73.00	+1	3386848..3387921	-	357	126454779	-	BURPS1106A_3482	-	aldose 1-epimerase family protein
3435	 69.73	0	3387968..3388783	-	271	126451580	-	BURPS1106A_3483	-	NAD dependent epimerase/dehydratase family protein
3436	 66.77	0	3388813..3389817	-	334	126452475	araH	BURPS1106A_3484	-	L-arabinose transporter permease protein
3437	 69.44	0	3389932..3391443	-	503	126454330	araG	BURPS1106A_3485	-	L-arabinose transporter ATP-binding protein
3438	 67.27	0	3391532..3392527	-	331	126455234	-	BURPS1106A_3486	-	carbohydrate ABC transporter periplasmic sugar-binding protein
3439	 72.05	0	3392657..3393436	-	259	126454797	-	BURPS1106A_3487	-	short chain dehydrogenase
3440	 73.19	+1	3393433..3394122	-	229	126452781	-	BURPS1106A_3488	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
3441	 74.56	+1	3394160..3395173	-	337	126452239	dgoK	BURPS1106A_3489	-	2-dehydro-3-deoxygalactonokinase
3442	 70.67	0	3395170..3396144	-	324	126454656	-	BURPS1106A_3490	-	IclR family transcriptional regulator
3443	 69.28	0	3396352..3396849	-	165	126455361	-	BURPS1106A_3491	-	hypothetical protein
3444	 64.16	0	3396846..3398480	-	544	126454227	-	BURPS1106A_3492	-	serine carboxypeptidase family protein
3445	 37.21	-2	3398595..3398723	+	42	126452033	-	BURPS1106A_3494	-	hypothetical protein
3446	 51.28	-2	3398720..3398875	-	51	126453146	-	BURPS1106A_3493	-	hypothetical protein
3447	 67.57	0	3398941..3399711	-	256	126452628	mtgA	BURPS1106A_3495	-	monofunctional biosynthetic peptidoglycan transglycosylase
3448	 73.04	+1	3399732..3400610	-	292	126451576	aroE	BURPS1106A_3496	-	shikimate 5-dehydrogenase
3449	 69.12	0	3400607..3402685	-	692	126455378	-	BURPS1106A_3497	-	ribonuclease II (RNB)-like protein
3450	 67.72	0	3402809..3403378	-	189	126453642	-	BURPS1106A_3498	-	hypothetical protein
3451	 68.45	0	3403375..3404889	-	504	126455119	mpl	BURPS1106A_3499	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3452	 64.38	0	3404981..3405637	+	218	126451984	-	BURPS1106A_3500	-	hypothetical protein
3453	 63.28	0	3405630..3406190	+	186	126453410	-	BURPS1106A_3501	-	thioredoxin family protein
3454	 64.46	0	3406386..3406838	+	150	126454282	aroQ	BURPS1106A_3502	-	3-dehydroquinate dehydratase
3455	 66.24	0	3406906..3407379	+	157	126453679	accB	BURPS1106A_3503	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
3456	 64.40	0	3407464..3408831	+	455	126454467	accC	BURPS1106A_3504	-	acetyl-CoA carboxylase biotin carboxylase subunit
3457	 68.65	0	3408828..3409736	+	302	126453605	prmA	BURPS1106A_3505	-	ribosomal protein L11 methyltransferase
3458	 72.55	0	3409784..3411211	+	475	126454484	-	BURPS1106A_3506	-	zinc finger/thioredoxin domain-containing protein
3459	 66.47	0	3411279..3411782	+	167	126451890	tpx	BURPS1106A_3507	-	thiol peroxidase
3460	 65.28	0	3411883..3412821	+	312	126452743	-	BURPS1106A_3508	-	PfkB family kinase
3461	 73.84	+1	3412845..3413318	+	157	126453833	-	BURPS1106A_3509	-	outer membrane lipoprotein
3462	 65.29	0	3413566..3414147	-	193	126454952	-	BURPS1106A_3510	-	hypothetical protein
3463	 62.13	-1	3414582..3415793	-	403	126453692	nrdB	BURPS1106A_3511	-	ribonucleotide-diphosphate reductase subunit beta
3464	 66.67	0	3416161..3419148	-	995	126454560	nrdA	BURPS1106A_3512	-	ribonucleotide-diphosphate reductase subunit alpha
3465	 65.96	0	3419173..3419454	+	93	126451831	-	BURPS1106A_3513	-	hypothetical protein
3466	 68.36	0	3419619..3420209	-	196	126452698	ampD	BURPS1106A_3514	-	N-acetyl-anhydromuranmyl-L-alanine amidase
3467	 72.59	0	3420206..3420526	-	106	126454725	-	BURPS1106A_3515	-	hypothetical protein
3468	 70.56	0	3420540..3421439	-	299	126455100	-	BURPS1106A_3516	-	cytochrome C assembly family protein
3469	 66.74	0	3421527..3422894	+	455	126451954	ffh	BURPS1106A_3517	-	signal recognition particle protein
3470	 63.95	0	3422992..3423543	+	183	126453542	-	BURPS1106A_3518	-	hypoxanthine-guanine phosphoribosyltransferase
3471	 66.17	0	3423734..3424336	-	200	126453993	-	BURPS1106A_3519	-	MarC membrane protein
3472	 66.49	0	3424368..3426104	-	578	126455301	proS	BURPS1106A_3520	-	prolyl-tRNA synthetase
3473	 63.90	0	3426322..3426972	+	216	126452879	-	BURPS1106A_3521	-	dinucleoside polyphosphate hydrolase
3474	 62.19	-1	3427058..3427615	+	185	126454047	-	BURPS1106A_3522	-	putative lipoprotein
3475	 68.36	0	3427825..3428943	-	372	161986641	proB	BURPS1106A_3523	-	gamma-glutamyl kinase
3476	 66.40	0	3429028..3430146	-	372	126451715	obgE	BURPS1106A_3524	-	GTPase ObgE
3477	 65.53	0	3430331..3430594	-	87	126453547	rpmA	BURPS1106A_3525	-	50S ribosomal protein L27
3478	 56.09	-2	3430623..3430934	-	103	126454153	rplU	BURPS1106A_3526	-	50S ribosomal protein L21
3479	 63.36	0	3431150..3432148	+	332	126451455	ispB	BURPS1106A_3527	-	octaprenyl-diphosphate synthase
3480	 63.19	0	3432429..3433724	+	431	126453893	-	BURPS1106A_3530	-	putative transporter
3481	 75.82	+1	3433681..3433833	-	50	126451864	-	BURPS1106A_3529	-	hypothetical protein
3482	 72.14	0	3433860..3435083	+	407	126452463	pilB	BURPS1106A_3531	-	type IV pilus biogenesis protein PilB
3483	 72.50	0	3435080..3436297	+	405	126451673	pilC	BURPS1106A_3532	-	type IV pilus biogenesis protein PilC
3484	 70.27	0	3436342..3437256	+	304	126455285	pilD	BURPS1106A_3533	-	type IV prepilin leader peptidase
3485	 67.16	0	3437260..3437871	+	203	126453294	coaE	BURPS1106A_3534	-	dephospho-CoA kinase
3486	 62.83	0	3438020..3438775	+	251	126452426	-	BURPS1106A_3535	-	hypothetical protein
3487	 65.69	0	3438811..3439014	+	67	126451790	-	BURPS1106A_3536	-	hypothetical protein
3488	 68.22	0	3439150..3439599	-	149	126454135	-	BURPS1106A_3537	-	mutator mutT protein
3489	 65.06	0	3439596..3440465	-	289	126452940	-	BURPS1106A_3538	-	hypothetical protein
3490	 67.68	0	3440486..3441772	-	428	126455430	argJ	BURPS1106A_3539	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
3491	 65.56	0	3441882..3444677	-	931	126452459	secA	BURPS1106A_3540	-	preprotein translocase subunit SecA
3492	 69.34	0	3444863..3445423	+	186	126452626	-	BURPS1106A_3541	-	hypothetical protein
3493	 72.71	0	3445389..3445868	+	159	126454688	-	BURPS1106A_3542	-	hypothetical protein
3494	 63.73	0	3446259..3447176	-	305	126453520	lpxC	BURPS1106A_3543	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3495	 67.65	0	3447418..3447924	-	168	126454386	-	BURPS1106A_3544	-	anti-oxidant AhpCTSA family protein
3496	 67.84	0	3448110..3449306	-	398	126453087	ftsZ	BURPS1106A_3545	-	cell division protein FtsZ
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.