IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3048	 57.50	-1	3017752..3017871	-	39	126452342	-	BURPS1106A_3095	-	hypothetical protein
3049	 67.81	0	3017896..3019290	+	464	126455007	hemN	BURPS1106A_3096	-	coproporphyrinogen III oxidase
3050	 68.22	0	3019374..3019631	+	85	126455352	-	BURPS1106A_3097	-	hypothetical protein
3051	 62.50	0	3019792..3020895	-	367	126454505	-	BURPS1106A_3098	-	transposase, IS4
3052	 64.98	0	3021095..3021748	+	217	126451653	-	BURPS1106A_3099	-	putative protein-L-isoaspartate O-methyltransferase
3053	 68.79	0	3021757..3022086	+	109	126452692	-	BURPS1106A_3100	-	rhodanese domain-containing protein
3054	 69.07	0	3022179..3023507	-	442	126453446	aptA	BURPS1106A_3101	-	beta amino acid--pyruvate transaminase
3055	 71.17	0	3023504..3023836	-	110	126452713	-	BURPS1106A_3102	-	hypothetical protein
3056	 64.30	0	3023861..3025168	+	435	126453909	-	BURPS1106A_3103	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
3057	 71.16	0	3025263..3026885	+	540	126455402	-	BURPS1106A_3104	-	putative amino acid ABC transporter, permease protein
3058	 68.16	0	3026887..3028089	+	400	126451529	-	BURPS1106A_3105	-	putative amino acid ABC transporter, permease protein
3059	 68.29	0	3028086..3028949	+	287	126454222	-	BURPS1106A_3106	-	putative amino acid ABC transporter, ATP-binding protein
3060	 69.12	0	3028954..3029646	+	230	126454368	-	BURPS1106A_3107	-	putative amino acid ABC transporter, ATP-binding protein
3061	 73.06	+1	3029866..3030741	+	291	126455428	ureD	BURPS1106A_3108	-	urease accessory protein UreD
3062	 71.05	0	3030790..3030903	+	37	126452285	-	BURPS1106A_3109	-	hypothetical protein
3063	 64.03	0	3030963..3031265	+	100	126453173	ureA	BURPS1106A_3110	-	urease subunit gamma
3064	 69.61	0	3031355..3031660	+	101	126453826	ureB	BURPS1106A_3111	-	urease subunit beta
3065	 68.37	0	3031725..3033431	+	568	126452548	ureC	BURPS1106A_3112	-	urease subunit alpha
3066	 70.83	0	3033449..3034072	+	207	126455370	ureE	BURPS1106A_3113	-	urease accessory protein UreE
3067	 72.01	0	3034029..3034739	+	236	126452298	ureF	BURPS1106A_3114	-	urease accessory protein UreF
3068	 65.75	0	3034770..3035420	+	216	126453111	ureG	BURPS1106A_3115	-	urease accessory protein UreG
3069	 74.68	+1	3035645..3037030	-	461	126453128	waaA	BURPS1106A_3116	-	3-deoxy-D-manno-octulosonic-acid transferase
3070	 68.81	0	3037068..3037952	-	294	126452533	-	BURPS1106A_3117	-	hypothetical protein
3071	 71.35	0	3037968..3039035	-	355	126452253	rfaC	BURPS1106A_3118	-	lipopolysaccharide heptosyltransferase I
3072	 68.15	0	3039144..3040562	-	472	126454166	-	BURPS1106A_3119	-	phosphoglucomutase/phosphomannomutase family protein
3073	 55.75	-2	3040535..3040708	-	57	126453349	-	BURPS1106A_3120	-	hypothetical protein
3074	 69.44	0	3040721..3042055	+	444	126452894	-	BURPS1106A_3121	-	hypothetical protein
3075	 69.41	0	3042052..3042888	+	278	126451781	-	BURPS1106A_3122	-	glycosyl transferase, group 2 family protein
3076	 69.86	0	3042917..3044074	+	385	126453504	-	BURPS1106A_3123	-	glycosyl transferase, group 1 family protein
3077	 68.62	0	3044089..3045111	+	340	126452926	galE	BURPS1106A_3124	-	UDP-glucose 4-epimerase
3078	 65.76	0	3045139..3046245	+	368	126452284	-	BURPS1106A_3125	-	glycosyl transferase, group 4 family protein
3079	 73.19	+1	3046308..3046445	-	45	126455322	-	BURPS1106A_3126	-	hypothetical protein
3080	 65.15	0	3046619..3048532	-	637	126453946	-	BURPS1106A_3127	-	capsular polysaccharide biosynthesis protein
3081	 60.04	-1	3048539..3049549	-	336	126453366	-	BURPS1106A_3128	-	glycosyl transferase, group 4 family protein
3082	 66.25	0	3049567..3050532	-	321	126452522	-	BURPS1106A_3129	-	NAD-dependent epimerase/dehydratase family protein
3083	 57.76	-1	3050529..3051359	-	276	126451674	-	BURPS1106A_3130	-	glycosyl transferase, group 2 family protein
3084	 60.75	-1	3051434..3053275	-	613	126454769	-	BURPS1106A_3131	-	glycosyl transferase, group 2 family protein
3085	 59.25	-1	3053327..3055051	-	574	126453865	-	BURPS1106A_3132	-	glycosyl transferase, group 2 family protein
3086	 59.32	-1	3055055..3055939	-	294	126452157	-	BURPS1106A_3133	-	putative glycosyl transferase
3087	 60.78	-1	3055999..3057069	-	356	126453040	-	BURPS1106A_3134	-	NAD-dependent epimerase/dehydratase family protein
3088	 56.50	-2	3057090..3058328	-	412	126454457	-	BURPS1106A_3135	-	putative O-antigen acetylase WbiA
3089	 59.23	-1	3058325..3059722	-	465	126455338	-	BURPS1106A_3136	-	putative lipopolysaccharide ABC transporter, ATP-binding protein
3090	 55.64	-2	3059724..3060557	-	277	126455168	-	BURPS1106A_3137	-	putative lipopolysaccharide ABC transporter, permease protein
3091	 63.10	0	3060584..3061480	-	298	126454004	rfbD	BURPS1106A_3138	-	dTDP-4-dehydrorhamnose reductase
3092	 55.98	-2	3061477..3062028	-	183	126452584	rfbC	BURPS1106A_3139	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3093	 63.31	0	3062013..3062906	-	297	126451933	rfbA	BURPS1106A_3140	-	glucose-1-phosphate thymidylyltransferase
3094	 65.07	0	3062918..3063979	-	353	126454814	rfbB	BURPS1106A_3141	-	dTDP-glucose 4,6-dehydratase
3095	 70.67	0	3064357..3065205	+	282	126454155	apaH	BURPS1106A_3142	-	diadenosine tetraphosphatase
3096	 71.26	0	3065335..3066204	-	289	126452991	-	BURPS1106A_3143	-	acyltransferase domain-containing protein
3097	 71.67	0	3066219..3067496	-	425	126452005	pyrC	BURPS1106A_3144	-	dihydroorotase
3098	 66.11	0	3067588..3068673	-	361	126455367	pyrB	BURPS1106A_3145	-	aspartate carbamoyltransferase catalytic subunit
3099	 73.99	+1	3068700..3069218	-	172	126452664	pyrR	BURPS1106A_3146	-	pyrimidine regulatory protein PyrR
3100	 66.21	0	3069205..3069645	-	146	126454156	-	BURPS1106A_3147	-	Holliday junction resolvase-like protein
3101	 65.28	0	3069642..3070220	-	192	126453877	-	BURPS1106A_3148	-	hypothetical protein
3102	 70.73	0	3070307..3070429	-	40	126452339	-	BURPS1106A_3149	-	hypothetical protein
3103	 74.26	+1	3070426..3071676	-	416	126453221	-	BURPS1106A_3150	-	hypothetical protein
3104	 56.14	-2	3071856..3072026	-	56	126453658	-	BURPS1106A_3151	-	rubredoxin
3105	 69.49	0	3072246..3073094	+	282	126454539	-	BURPS1106A_3152	-	putative phosphomethylpyrimidine kinase
3106	 64.05	0	3073525..3075165	-	546	126452878	groEL	BURPS1106A_3153	-	chaperonin GroEL
3107	 60.54	-1	3075213..3075506	-	97	126453024	groES	BURPS1106A_3154	-	co-chaperonin GroES
3108	 47.86	-2	3075641..3075757	+	38	126451903	-	BURPS1106A_3156	-	hypothetical protein
3109	 55.95	-2	3075729..3075896	-	55	126454813	-	BURPS1106A_3155	-	hypothetical protein
3110	 72.34	0	3075877..3076017	-	46	126452871	-	BURPS1106A_3157	-	hypothetical protein
3111	 68.65	0	3076096..3078165	-	689	126451744	-	BURPS1106A_3158	-	hypothetical protein
3112	 64.68	0	3078061..3078261	+	66	126452491	-	BURPS1106A_3159	-	hypothetical protein
3113	 49.06	-2	3078239..3078505	+	88	126454793	-	BURPS1106A_3161	-	hypothetical protein
3114	 48.48	-2	3078479..3078643	-	54	126455449	-	BURPS1106A_3160	-	hypothetical protein
3115	 50.00	-2	3078924..3079061	+	45	126453810	-	BURPS1106A_3162	-	hypothetical protein
3116	 64.14	0	3079313..3079747	-	144	126452115	-	BURPS1106A_3163	-	putative transcriptional regulator
3117	 68.47	0	3079786..3081003	+	405	126454906	-	BURPS1106A_3164	-	zinc-binding dehydrogenase family oxidoreductase
3118	 70.58	0	3081027..3082049	-	340	126454360	-	BURPS1106A_3165	-	hypothetical protein
3119	 71.91	0	3082070..3082546	+	158	126454982	-	BURPS1106A_3167	-	hypothetical protein
3120	 64.15	0	3082540..3083055	-	171	126453243	-	BURPS1106A_3166	-	hypothetical protein
3121	 64.49	0	3083171..3084043	-	290	126452321	-	BURPS1106A_3168	-	OmpW family outer membrane protein
3122	 66.19	0	3084073..3085326	-	417	126452355	-	BURPS1106A_3169	-	putative lipoprotein
3123	 66.23	0	3085386..3086984	-	532	126453208	-	BURPS1106A_3170	-	hypothetical protein
3124	 48.84	-2	3087519..3087647	-	42	126454579	-	BURPS1106A_3171	-	hypothetical protein
3125	 63.81	0	3087644..3088168	-	174	126451464	-	BURPS1106A_3172	-	PadR family transcriptional regulator
3126	 63.86	0	3088221..3089681	+	486	126451525	-	BURPS1106A_3173	-	metallo-beta-lactamase family protein
3127	 69.73	0	3089863..3090450	+	195	126452632	-	BURPS1106A_3174	-	DNA-binding protein
3128	 71.78	0	3090447..3090974	+	175	126454116	-	BURPS1106A_3175	-	acetyltransferase
3129	 68.11	0	3091324..3091947	+	207	126455433	-	BURPS1106A_3176	-	LysE family translocator protein
3130	 68.16	0	3092432..3093568	+	378	126451691	-	BURPS1106A_3177	-	glycerophosphoryl diester phosphodiesterase
3131	 71.59	0	3093698..3095140	+	480	126452508	-	BURPS1106A_3178	-	EmrB/QacA family drug resistance transporter
3132	 66.90	0	3095278..3095700	+	140	126453986	-	BURPS1106A_3179	-	hypothetical protein
3133	 70.34	0	3095637..3096425	+	262	126454973	-	BURPS1106A_3180	-	hypothetical protein
3134	 65.64	0	3096758..3098605	-	615	126452334	-	BURPS1106A_3181	-	carboxypeptidase C
3135	 57.25	-1	3098605..3098742	-	45	126451677	-	BURPS1106A_3182	-	hypothetical protein
3136	 27.35	-2	3098944..3099060	+	38	126453696	-	BURPS1106A_3183	-	hypothetical protein
3137	 71.38	0	3099211..3101310	-	699	126454485	-	BURPS1106A_3184	-	alpha/beta fold family hydrolase
3138	 68.83	0	3101430..3101798	-	122	126451855	-	BURPS1106A_3185	-	transport-associated domain-containing protein
3139	 71.32	0	3102067..3102195	-	42	126452717	-	BURPS1106A_3186	-	hypothetical protein
3140	 70.00	0	3102202..3103701	+	499	126454522	-	BURPS1106A_3187	-	2-hydroxychromene-2-carboxylate isomerase
3141	 67.92	0	3103799..3104437	+	212	126453139	-	BURPS1106A_3188	-	2-hydroxychromene-2-carboxylate isomerase
3142	 71.52	0	3104511..3105458	+	315	126454309	-	BURPS1106A_3189	-	transcriptional regulator
3143	 74.37	+1	3105541..3106656	-	371	126453848	-	BURPS1106A_3190	-	ABC-type Fe3+-siderophore transport system, permease component
3144	 71.91	0	3106653..3107681	-	342	126454905	-	BURPS1106A_3191	-	membrane transport solute-binding protein
3145	 73.43	+1	3107675..3108472	-	265	126451871	-	BURPS1106A_3192	-	iron compound ABC transporter, ATP-binding protein
3146	 72.92	0	3108514..3110784	-	756	126451981	-	BURPS1106A_3193	-	Outer membrane receptor protein, mostly Fe transport
3147	 71.24	0	3110767..3110919	+	50	126453586	-	BURPS1106A_3194	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.