IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2974	 71.88	0	2953682..2954314	+	210	126455253	yggV	BURPS1106A_3018	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2975	 68.23	0	2954311..2955528	+	405	126453675	-	BURPS1106A_3019	-	coproporphyrinogen III oxidase
2976	 68.85	0	2956011..2956193	+	60	126454554	-	BURPS1106A_3021	-	putative phage integrase
2977	 60.48	-1	2956253..2956462	+	69	126452410	-	BURPS1106A_3022	-	hypothetical protein
2978	 64.10	0	2956736..2957047	-	103	126453269	-	BURPS1106A_3023	-	XRE family transcriptional regulator
2979	 69.49	0	2957488..2957982	+	164	126455147	-	BURPS1106A_3024	-	TonB domain-containing protein
2980	 75.76	+1	2958104..2958301	-	65	126451742	-	BURPS1106A_3025	-	hypothetical protein
2981	 69.48	0	2958401..2959714	+	437	126453554	-	BURPS1106A_3026	-	MFS transporter, metabolite:H+ symporter (MHS) family protein
2982	 63.39	0	2959895..2960077	+	60	126454441	-	BURPS1106A_3027	-	hypothetical protein
2983	 70.09	0	2960112..2961134	-	340	126453092	rfaC	BURPS1106A_3028	-	lipopolysaccharide heptosyltransferase I
2984	 70.01	0	2961221..2962957	+	578	126452143	-	BURPS1106A_3029	-	chloride channel (ClC) family protein
2985	 70.48	0	2963074..2963493	-	139	126455256	-	BURPS1106A_3030	-	hypothetical protein
2986	 58.43	-1	2963615..2963869	-	84	126454371	minE	BURPS1106A_3031	-	cell division topological specificity factor MinE
2987	 63.24	0	2963882..2964697	-	271	126452968	minD	BURPS1106A_3032	-	septum site-determining protein MinD
2988	 68.39	0	2964756..2965568	-	270	126452163	minC	BURPS1106A_3033	-	septum formation inhibitor
2989	 69.68	0	2965722..2966219	-	165	126454884	-	BURPS1106A_3034	-	acetyltransferase
2990	 58.87	-1	2966286..2966978	+	230	126452766	-	BURPS1106A_3035	-	hypothetical protein
2991	 56.41	-2	2967211..2967483	+	90	126451692	-	BURPS1106A_3036	-	hypothetical protein
2992	 67.43	0	2967913..2969214	-	433	126454758	serS	BURPS1106A_3038	-	seryl-tRNA synthetase
2993	 63.78	0	2969327..2969638	+	103	126455282	-	BURPS1106A_3039	-	hypothetical protein
2994	 68.80	0	2969678..2970988	-	436	126454407	-	BURPS1106A_3040	-	recombination factor protein RarA
2995	 81.77	+2	2971013..2971204	+	63	126453207	-	BURPS1106A_3042	-	hypothetical protein
2996	 66.67	0	2971194..2971910	-	238	126452390	lolA	BURPS1106A_3041	-	outer-membrane lipoprotein carrier protein
2997	 67.84	0	2971968..2974274	-	768	126452613	ftsK	BURPS1106A_3043	-	DNA translocase FtsK
2998	 65.48	0	2974352..2974519	-	55	126453486	-	BURPS1106A_3044	-	hypothetical protein
2999	 66.98	0	2974602..2975564	+	320	126454930	trxB	BURPS1106A_3045	-	thioredoxin-disulfide reductase
3000	 74.12	+1	2975730..2976467	+	245	126455384	-	BURPS1106A_3046	-	Smr domain-containing protein
3001	 68.60	0	2976493..2977113	+	206	126455043	-	BURPS1106A_3047	-	hypothetical protein
3002	 66.22	0	2977346..2978464	-	372	126454160	-	BURPS1106A_3048	-	carbohydrate ABC transporter ATP-binding protein
3003	 63.17	0	2978565..2979422	-	285	126452728	-	BURPS1106A_3049	-	carbohydrate ABC transporter permease
3004	 65.07	0	2979412..2980350	-	312	126451853	-	BURPS1106A_3050	-	carbohydrate ABC transporter permease
3005	 71.90	0	2980334..2980486	-	50	126451928	-	BURPS1106A_3051	-	hypothetical protein
3006	 66.03	0	2980507..2981754	-	415	126452555	-	BURPS1106A_3052	-	carbohydrate ABC transporter periplasmic binding protein
3007	 68.30	0	2982213..2983682	+	489	126454033	zwf	BURPS1106A_3053	-	glucose-6-phosphate 1-dehydrogenase
3008	 72.39	0	2983770..2984450	+	226	126455127	pgl	BURPS1106A_3054	-	6-phosphogluconolactonase
3009	 68.85	0	2984428..2986353	+	641	126455435	glk	BURPS1106A_3055	-	glucokinase
3010	 67.71	0	2986650..2987612	+	320	126453748	-	BURPS1106A_3056	-	polar amino acid ABC transporter periplasmic amino acid-binding protein
3011	 68.48	0	2987698..2988357	+	219	126454206	-	BURPS1106A_3057	-	polar amino acid ABC transporter permease
3012	 66.25	0	2988404..2989129	+	241	126455064	-	BURPS1106A_3058	-	polar amino acid ABC transporter ATP-binding protein
3013	 71.57	0	2989200..2990219	+	339	126452372	dcyD	BURPS1106A_3059	-	D-cysteine desulfhydrase
3014	 71.58	0	2990216..2990683	+	155	126453198	-	BURPS1106A_3060	-	hypothetical protein
3015	 71.68	0	2990793..2992028	-	411	126453717	-	BURPS1106A_3061	-	Bcr/CflA subfamily drug resistance transporter
3016	 66.47	0	2992234..2992731	+	165	126454859	-	BURPS1106A_3062	-	hypothetical protein
3017	 69.06	0	2992837..2993295	+	152	126451465	-	BURPS1106A_3063	-	hypothetical protein
3018	 70.64	0	2993799..2995082	+	427	126452611	hemL	BURPS1106A_3064	-	glutamate-1-semialdehyde 2,1-aminomutase
3019	 72.21	0	2995111..2996247	+	378	126453712	ribD	BURPS1106A_3065	-	riboflavin biosynthesis protein RibD
3020	 67.32	0	2996262..2996876	+	204	126454751	ribE	BURPS1106A_3066	-	riboflavin synthase subunit alpha
3021	 70.54	0	2996982..2997110	-	42	126454750	-	BURPS1106A_3067	-	hypothetical protein
3022	 79.71	+2	2997100..2997306	+	68	126451602	-	BURPS1106A_3068	-	hypothetical protein
3023	 68.43	0	2997339..2998475	+	378	126453401	ribBA	BURPS1106A_3069	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
3024	 63.79	0	2998555..2999076	+	173	126454314	ribH	BURPS1106A_3070	-	riboflavin synthase subunit beta
3025	 66.44	0	2999073..2999510	+	145	126452933	nusB	BURPS1106A_3071	-	transcription antitermination protein NusB
3026	 69.43	0	2999575..3000768	+	397	126453812	-	BURPS1106A_3072	-	aminotransferase
3027	 62.38	0	3001017..3001226	+	69	126455002	-	BURPS1106A_3073	-	hypothetical protein
3028	 69.72	0	3001395..3002507	-	370	126452365	-	BURPS1106A_3074	-	Slt family transglycosylase
3029	 68.27	0	3003087..3004646	+	519	126454327	ubiD	BURPS1106A_3075	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
3030	 69.91	0	3004684..3005361	+	225	126453975	-	BURPS1106A_3076	-	LysE family translocator protein
3031	 72.50	0	3005422..3005541	+	39	126452889	-	BURPS1106A_3077	-	hypothetical protein
3032	 70.73	0	3005808..3006791	-	327	126451736	-	BURPS1106A_3078	-	serine/threonine dehydratase
3033	 68.89	0	3006780..3006959	+	59	126453457	-	BURPS1106A_3080	-	hypothetical protein
3034	 70.75	0	3006953..3007246	-	97	126454584	-	BURPS1106A_3079	-	hypothetical protein
3035	 67.64	0	3007277..3007585	-	102	126453912	-	BURPS1106A_3081	-	hypothetical protein
3036	 74.23	+1	3007670..3008806	+	378	126452119	-	BURPS1106A_3082	-	putative NADP oxidoreductase coenzyme F420-dependent
3037	 65.73	0	3008811..3009452	+	213	126454641	-	BURPS1106A_3083	-	YGGT family membrane protein
3038	 66.67	0	3009476..3009832	-	118	126454385	-	BURPS1106A_3084	-	hypothetical protein
3039	 66.67	0	3009856..3010242	-	128	126453489	crcB	BURPS1106A_3085	-	crcB protein
3040	 67.32	0	3010852..3012072	+	406	126453435	-	BURPS1106A_3086	-	putative lipoprotein
3041	 68.12	0	3012340..3013098	-	252	126451950	-	BURPS1106A_3087	-	hypothetical protein
3042	 74.81	+1	3013200..3013334	-	44	126455092	-	BURPS1106A_3088	-	hypothetical protein
3043	 69.54	0	3013312..3014562	-	416	126453621	-	BURPS1106A_3089	-	NAD-dependent deacetylase
3044	 70.55	0	3014957..3015754	+	265	126452731	trmB	BURPS1106A_3091	-	tRNA (guanine-N(7))-methyltransferase
3045	 66.19	0	3015912..3016742	-	276	126453672	-	BURPS1106A_3092	-	undecaprenyl pyrophosphate phosphatase
3046	 65.29	0	3016819..3017400	-	193	126452782	-	BURPS1106A_3093	-	hypothetical protein
3047	 72.73	0	3017397..3017726	-	109	126453247	-	BURPS1106A_3094	-	hypothetical protein
3048	 57.50	-1	3017752..3017871	-	39	126452342	-	BURPS1106A_3095	-	hypothetical protein
3049	 67.81	0	3017896..3019290	+	464	126455007	hemN	BURPS1106A_3096	-	coproporphyrinogen III oxidase
3050	 68.22	0	3019374..3019631	+	85	126455352	-	BURPS1106A_3097	-	hypothetical protein
3051	 62.50	0	3019792..3020895	-	367	126454505	-	BURPS1106A_3098	-	transposase, IS4
3052	 64.98	0	3021095..3021748	+	217	126451653	-	BURPS1106A_3099	-	putative protein-L-isoaspartate O-methyltransferase
3053	 68.79	0	3021757..3022086	+	109	126452692	-	BURPS1106A_3100	-	rhodanese domain-containing protein
3054	 69.07	0	3022179..3023507	-	442	126453446	aptA	BURPS1106A_3101	-	beta amino acid--pyruvate transaminase
3055	 71.17	0	3023504..3023836	-	110	126452713	-	BURPS1106A_3102	-	hypothetical protein
3056	 64.30	0	3023861..3025168	+	435	126453909	-	BURPS1106A_3103	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
3057	 71.16	0	3025263..3026885	+	540	126455402	-	BURPS1106A_3104	-	putative amino acid ABC transporter, permease protein
3058	 68.16	0	3026887..3028089	+	400	126451529	-	BURPS1106A_3105	-	putative amino acid ABC transporter, permease protein
3059	 68.29	0	3028086..3028949	+	287	126454222	-	BURPS1106A_3106	-	putative amino acid ABC transporter, ATP-binding protein
3060	 69.12	0	3028954..3029646	+	230	126454368	-	BURPS1106A_3107	-	putative amino acid ABC transporter, ATP-binding protein
3061	 73.06	+1	3029866..3030741	+	291	126455428	ureD	BURPS1106A_3108	-	urease accessory protein UreD
3062	 71.05	0	3030790..3030903	+	37	126452285	-	BURPS1106A_3109	-	hypothetical protein
3063	 64.03	0	3030963..3031265	+	100	126453173	ureA	BURPS1106A_3110	-	urease subunit gamma
3064	 69.61	0	3031355..3031660	+	101	126453826	ureB	BURPS1106A_3111	-	urease subunit beta
3065	 68.37	0	3031725..3033431	+	568	126452548	ureC	BURPS1106A_3112	-	urease subunit alpha
3066	 70.83	0	3033449..3034072	+	207	126455370	ureE	BURPS1106A_3113	-	urease accessory protein UreE
3067	 72.01	0	3034029..3034739	+	236	126452298	ureF	BURPS1106A_3114	-	urease accessory protein UreF
3068	 65.75	0	3034770..3035420	+	216	126453111	ureG	BURPS1106A_3115	-	urease accessory protein UreG
3069	 74.68	+1	3035645..3037030	-	461	126453128	waaA	BURPS1106A_3116	-	3-deoxy-D-manno-octulosonic-acid transferase
3070	 68.81	0	3037068..3037952	-	294	126452533	-	BURPS1106A_3117	-	hypothetical protein
3071	 71.35	0	3037968..3039035	-	355	126452253	rfaC	BURPS1106A_3118	-	lipopolysaccharide heptosyltransferase I
3072	 68.15	0	3039144..3040562	-	472	126454166	-	BURPS1106A_3119	-	phosphoglucomutase/phosphomannomutase family protein
3073	 55.75	-2	3040535..3040708	-	57	126453349	-	BURPS1106A_3120	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.