IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
236	 78.51	+2	222623..224125	+	500	126451708	-	BURPS1106A_0238	-	hypothetical protein
237	 72.33	0	224122..224439	+	105	126452833	-	BURPS1106A_0239	-	putative flagellar biosynthesis protein
238	 70.69	0	224659..225378	+	239	126455053	-	BURPS1106A_0240	-	hypothetical protein
239	 71.35	0	225466..226491	-	341	126452863	-	BURPS1106A_0241	-	putative xanthine dehydrogenase accessory factor
240	 67.81	0	226690..228093	-	467	126452851	-	BURPS1106A_0242	-	amino acid permease
241	 64.99	0	228335..228991	-	218	126453572	-	BURPS1106A_0243	-	LuxR family DNA-binding response regulator
242	 77.00	+1	228988..229848	-	286	126454303	-	BURPS1106A_0244	-	putative sensor histidine kinase
243	 63.55	0	230262..231032	-	256	126452194	-	BURPS1106A_0245	-	putative ferredoxin--NADP reductase
244	 72.78	0	231245..231898	-	217	126453008	-	BURPS1106A_0246	-	LysE family translocator protein
245	 72.32	0	231964..232776	-	270	126454198	-	BURPS1106A_0247	-	endonuclease/exonuclease/phosphatase family protein
246	 72.16	0	232783..233346	-	187	126454807	-	BURPS1106A_0248	-	hypothetical protein
247	 71.35	0	233370..233561	+	63	126452164	-	BURPS1106A_0249	-	hypothetical protein
248	 67.28	0	233707..234687	+	326	126453536	-	BURPS1106A_0250	-	ATP-dependent protease domain-containing protein
249	 71.03	0	234759..235880	+	373	126454680	-	BURPS1106A_0251	-	FAD-dependent oxidoreductase
250	 66.35	0	236015..236329	+	104	126452268	hip	BURPS1106A_0252	-	high-potential iron-sulfur protein
251	 67.67	0	236562..237854	+	430	126454714	-	BURPS1106A_0253	-	major facilitator family transporter
252	 64.52	0	237900..238085	+	61	126452735	-	BURPS1106A_0255	-	hypothetical protein
253	 53.59	-2	238076..238228	-	50	126451527	-	BURPS1106A_0254	-	hypothetical protein
254	 62.80	0	238285..239913	+	542	126454101	dppA	BURPS1106A_0256	-	dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA
255	 66.77	0	240025..241035	+	336	126455063	dppB	BURPS1106A_0257	-	dipeptide ABC transporter, permease protein DppB
256	 70.38	0	241110..242051	+	313	126452395	dppC	BURPS1106A_0258	-	dipeptide ABC transporter, permease protein DppC
257	 67.07	0	242053..243045	+	330	126453266	dppD	BURPS1106A_0259	-	dipeptide ABC transporter, ATP-binding protein DppD
258	 68.93	0	243042..244058	+	338	126455308	dppF	BURPS1106A_0260	-	dipeptide transporter ATP-binding subunit
259	 73.09	+1	244063..245199	+	378	126454311	-	BURPS1106A_0261	-	GumN family protein
260	 68.23	0	245677..246633	-	318	126453132	-	BURPS1106A_0262	-	hypothetical protein
261	 71.45	0	246630..247382	-	250	126454307	-	BURPS1106A_0263	-	hypothetical protein
262	 70.33	0	247992..248756	-	254	126455197	-	BURPS1106A_0264	-	hypothetical protein
263	 73.33	+1	248815..249894	-	359	126451983	-	BURPS1106A_0265	-	allophanate hydrolase, subunit 2
264	 69.39	0	249891..250661	-	256	126453827	-	BURPS1106A_0266	-	putative allophanate hydrolase, subunit 1
265	 62.77	0	250697..251209	+	170	126454754	-	BURPS1106A_0267	-	hypothetical protein
266	 73.87	+1	251481..252077	-	198	126452206	-	BURPS1106A_0268	-	5-formyltetrahydrofolate cyclo-ligase family protein
267	 68.51	0	252099..254054	+	651	126453322	-	BURPS1106A_0269	-	Slt family transglycosylase
268	 73.54	+1	254176..255135	+	319	126453488	-	BURPS1106A_0270	-	NAD-dependent epimerase/dehydratase family protein
269	 70.68	0	255199..255846	+	215	126454638	-	BURPS1106A_0271	-	glutathione S-transferase domain-containing protein
270	 72.62	0	255843..257084	+	413	126451805	cca	BURPS1106A_0272	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
271	 71.88	0	257225..257416	-	63	126452765	-	BURPS1106A_0273	-	hypothetical protein
272	 62.61	0	257733..257954	-	73	126455267	-	BURPS1106A_0274	-	putative RebB protein
273	 69.09	0	258449..258943	-	164	126454021	-	BURPS1106A_0275	-	FlgN family flagellar protein
274	 71.59	0	258969..259313	-	114	126453570	flgM	BURPS1106A_0276	-	flagellar biosynthesis regulator protein FlgM
275	 76.84	+1	259417..260940	-	507	126453246	flgA	BURPS1106A_0277	-	flagellar basal body P-ring biosynthesis protein FlgA
276	 68.70	0	261200..261691	+	163	126451866	flgB	BURPS1106A_0278	-	flagellar basal body rod protein FlgB
277	 65.02	0	261775..262200	+	141	126454889	flgC	BURPS1106A_0279	-	flagellar basal body rod protein FlgC
278	 66.67	0	262254..263096	+	280	126454100	flgD	BURPS1106A_0280	-	flagellar basal body rod modification protein
279	 64.57	0	263124..264365	+	413	126453793	flgE	BURPS1106A_0281	-	flagellar hook protein FlgE
280	 68.77	0	264392..265153	+	253	126452329	flgF	BURPS1106A_0282	-	flagellar basal body rod protein FlgF
281	 65.78	0	265187..265975	+	262	126454438	flgG	BURPS1106A_0283	-	flagellar basal body rod protein FlgG
282	 68.46	0	265996..266718	+	240	126452858	flgH	BURPS1106A_0284	-	flagellar basal body L-ring protein
283	 70.73	0	266712..267917	+	401	126451759	flgI	BURPS1106A_0285	-	flagellar basal body P-ring protein
284	 66.45	0	267918..268853	+	311	126454563	flgJ	BURPS1106A_0286	-	peptidoglycan hydrolase
285	 67.85	0	269069..269827	+	252	126453685	-	BURPS1106A_0287	-	hypothetical protein
286	 68.26	0	270022..272025	+	667	126451511	flgK	BURPS1106A_0288	-	flagellar hook-associated protein FlgK
287	 68.05	0	272041..273273	+	410	126452666	flgL	BURPS1106A_0289	-	flagellar hook-associated protein FlgL
288	 75.00	+1	273391..273582	+	63	126453883	-	BURPS1106A_0290	-	hypothetical protein
289	 68.96	0	273641..274948	+	435	126454961	-	BURPS1106A_0291	-	uracil-xanthine permease
290	 71.79	0	274945..275139	+	64	126452174	-	BURPS1106A_0292	-	hypothetical protein
291	 70.41	0	275163..276044	-	293	126452884	-	BURPS1106A_0293	-	DNA-binding transcriptional activator GcvA
292	 72.33	0	276142..276741	+	199	126455032	-	BURPS1106A_0294	-	chromate transporter
293	 69.68	0	276738..277268	+	176	126454196	-	BURPS1106A_0295	-	chromate transporter
294	 75.00	+1	277432..277623	+	63	126452020	-	BURPS1106A_0297	-	hypothetical protein
295	 64.31	0	277595..277933	-	112	126454184	-	BURPS1106A_0296	-	hypothetical protein
296	 60.87	-1	278047..278391	+	114	126451939	-	BURPS1106A_0298	-	phnA family protein
297	 68.56	0	278409..279149	+	246	126454826	-	BURPS1106A_0299	-	hypothetical protein
298	 71.51	0	279246..279431	-	61	126452847	-	BURPS1106A_0300	-	28kDa protein
299	 72.33	0	279388..279546	+	52	126451489	-	BURPS1106A_0301	-	hypothetical protein
300	 64.99	0	279690..280823	+	377	126454597	-	BURPS1106A_0302	-	outer membrane porin
301	 65.69	0	280981..281802	-	273	126453819	-	BURPS1106A_0303	-	hypothetical protein
302	 69.50	0	281862..282425	-	187	126451810	-	BURPS1106A_0304	-	putative lipoprotein
303	 71.67	0	282677..282796	-	39	126452844	-	BURPS1106A_0305	-	hypothetical protein
304	 70.85	0	282793..283773	-	326	126453560	-	BURPS1106A_0306	-	hypothetical protein
305	 61.67	-1	283770..283889	-	39	126454679	-	BURPS1106A_0307	-	hypothetical protein
306	 71.95	0	283856..285124	-	422	126455398	-	BURPS1106A_0308	-	putative glycosyltransferase
307	 69.57	0	285506..287020	-	504	126454499	oprB	BURPS1106A_0309	-	carbohydrate porin
308	 73.95	+1	287122..287382	-	86	126453117	-	BURPS1106A_0310	-	hypothetical protein
309	 58.64	-1	287564..287887	-	107	126452229	-	BURPS1106A_0311	-	hypothetical protein
310	 59.57	-1	288418..288558	+	46	126451794	-	BURPS1106A_0312	-	hypothetical protein
311	 68.19	0	288578..290353	+	591	126452061	-	BURPS1106A_0313	-	manganese transporter NRAMP
312	 64.10	0	290532..290648	+	38	126452471	-	BURPS1106A_0314	-	hypothetical protein
313	 68.25	0	290686..290874	-	62	126453879	-	BURPS1106A_0315	-	hypothetical protein
314	 64.72	0	290828..291136	+	102	126454268	-	BURPS1106A_0316	-	hypothetical protein
315	 69.97	0	291333..292694	+	453	126455173	gor	BURPS1106A_0317	-	glutathione-disulfide reductase
316	 70.48	0	293008..293217	-	69	126452546	-	BURPS1106A_0318	-	hypothetical protein
317	 64.88	0	293287..294627	+	446	126453241	argG	BURPS1106A_0319	-	argininosuccinate synthase
318	 71.88	0	294753..295424	+	223	126451920	-	BURPS1106A_0320	-	hypothetical protein
319	 70.57	0	295421..296239	+	272	126452779	-	BURPS1106A_0321	-	hypothetical protein
320	 64.58	0	296474..296809	+	111	126454189	-	BURPS1106A_0322	-	heavy metal-binding domain-containing protein
321	 68.78	0	297155..297343	+	62	126455456	-	BURPS1106A_0323	-	hypothetical protein
322	 69.95	0	297415..299943	-	842	126455144	-	BURPS1106A_0324	-	copper-translocating P-type ATPase
323	 72.43	0	299950..300192	+	80	126452252	-	BURPS1106A_0325	-	hypothetical protein
324	 65.48	0	300492..301166	+	224	126453852	-	BURPS1106A_0326	-	hypothetical protein
325	 72.20	0	301163..302011	+	282	126454023	-	BURPS1106A_0327	-	putative lipoprotein
326	 68.27	0	302011..302508	+	165	126451716	-	BURPS1106A_0328	-	hypothetical protein
327	 67.31	0	302542..303009	+	155	126452841	-	BURPS1106A_0329	-	putative lipoprotein
328	 73.58	+1	303108..304409	+	433	126455001	-	BURPS1106A_0330	-	outer membrane efflux protein
329	 70.80	0	304420..305991	+	523	126452324	-	BURPS1106A_0331	-	RND family efflux transporter MFP subunit
330	 69.09	0	305988..309200	+	1070	126452286	-	BURPS1106A_0332	-	CzcA family heavy metal RND efflux protein
331	 68.71	0	309197..309538	+	113	126452203	-	BURPS1106A_0333	-	hypothetical protein
332	 77.59	+1	309542..309715	+	57	126454617	-	BURPS1106A_0334	-	hypothetical protein
333	 65.03	0	309829..310194	+	121	126453453	-	BURPS1106A_0335	-	putative streptavidin
334	 67.70	0	310269..312101	-	610	126452867	glmS	BURPS1106A_0336	-	D-fructose-6-phosphate amidotransferase
335	 56.06	-2	312064..312195	+	43	126452013	-	BURPS1106A_0338	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.