IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2526	 69.60	0	2511372..2512190	-	272	126452369	map	BURPS1106A_2557	-	methionine aminopeptidase, type I
2527	 64.89	0	2512190..2512414	-	74	126452198	-	BURPS1106A_2558	-	hypothetical protein
2528	 69.12	0	2512405..2512689	-	94	126455329	-	BURPS1106A_2559	-	pseudouridine synthase, Rsu
2529	 70.87	0	2512698..2515412	-	904	126454134	-	BURPS1106A_2560	-	argininosuccinate lyase
2530	 68.54	0	2515492..2516556	-	354	126452722	-	BURPS1106A_2561	-	cysteine synthase/cystathionine beta-synthase family protein
2531	 68.75	0	2516561..2517760	-	399	126452895	-	BURPS1106A_2562	-	GHMP kinase domain-containing protein
2532	 68.63	0	2517783..2518748	-	321	126452905	cysD	BURPS1106A_2563	-	sulfate adenylyltransferase subunit 2
2533	 66.79	0	2518904..2519722	-	272	126453005	-	BURPS1106A_2564	-	glycosyl transferase, group 2 family protein
2534	 67.31	0	2519813..2520907	-	364	126452158	serC-2	BURPS1106A_2565	-	phosphoserine aminotransferase
2535	 65.78	0	2520948..2522075	-	375	126454148	-	BURPS1106A_2566	-	acyltransferase family protein
2536	 73.26	+1	2522127..2523278	-	383	126453216	-	BURPS1106A_2567	-	hypothetical protein
2537	 71.93	0	2523275..2524186	-	303	126452363	-	BURPS1106A_2568	-	transketolase domain-containing protein
2538	 71.39	0	2524183..2525007	-	274	126454534	-	BURPS1106A_2569	-	transketolase domain-containing protein
2539	 74.01	+1	2525027..2526115	-	362	126454284	-	BURPS1106A_2570	-	hypothetical protein
2540	 66.28	0	2526109..2526888	-	259	126453378	-	BURPS1106A_2571	-	hypothetical protein
2541	 67.61	0	2526908..2527756	-	282	126451545	-	BURPS1106A_2572	-	hypothetical protein
2542	 69.40	0	2527826..2528704	-	292	126451902	-	BURPS1106A_2573	-	dioxygenase, TauD/TfdA
2543	 68.17	0	2528709..2529506	-	265	126453344	-	BURPS1106A_2574	-	hypothetical protein
2544	 72.10	0	2529503..2538442	-	2979	126453674	-	BURPS1106A_2575	-	non-ribosomal peptide synthase
2545	 72.38	0	2538526..2539926	-	466	126455089	-	BURPS1106A_2576	-	hypothetical protein
2546	 72.09	0	2540160..2540288	-	42	126452187	-	BURPS1106A_2577	-	hypothetical protein
2547	 72.20	0	2540285..2541586	-	433	126455052	-	BURPS1106A_2578	-	major facilitator family transporter
2548	 73.08	+1	2541654..2543492	-	612	126452346	-	BURPS1106A_2579	-	amino acid adenylation domain-containing protein
2549	 73.06	+1	2543543..2545012	-	489	126451714	cysC	BURPS1106A_2580	-	adenylylsulfate kinase
2550	 68.49	0	2545597..2545815	+	72	126454105	-	BURPS1106A_2581	-	hypothetical protein
2551	 73.66	+1	2546148..2546390	+	80	126454297	-	BURPS1106A_2582	-	hypothetical protein
2552	 70.79	0	2546484..2547719	+	411	126451497	-	BURPS1106A_2583	-	RND family efflux transporter MFP subunit
2553	 67.68	0	2547716..2550862	+	1048	126454028	-	BURPS1106A_2584	-	AcrB/AcrD/AcrF family protein
2554	 70.68	0	2550940..2552160	+	406	126455190	-	BURPS1106A_2585	-	hypothetical protein
2555	 68.69	0	2552199..2554031	-	610	126454868	-	BURPS1106A_2586	-	GDSL-like lipase/acylhydrolase domain/outer membrane autotransporter barrel domain-containing protein
2556	 70.87	0	2554225..2555271	-	348	126451949	-	BURPS1106A_2587	-	hypothetical protein
2557	 53.09	-2	2555273..2555434	-	53	126452516	-	BURPS1106A_2588	-	hypothetical protein
2558	 50.79	-2	2555610..2555735	-	41	126453677	-	BURPS1106A_2589	-	hypothetical protein
2559	 62.83	0	2556557..2557807	-	416	126451837	-	BURPS1106A_2591	-	aspartate kinase
2560	 63.79	0	2557790..2558032	+	80	126454573	-	BURPS1106A_2592	-	hypothetical protein
2561	 73.09	+1	2558148..2559626	-	492	126454111	tilS	BURPS1106A_2593	-	tRNA(Ile)-lysidine synthetase
2562	 65.33	0	2559670..2560641	-	323	126454581	accA	BURPS1106A_2594	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2563	 69.22	0	2560745..2561683	-	312	126455439	-	BURPS1106A_2595	-	base excision DNA repair protein
2564	 65.31	0	2561731..2563128	-	465	126452065	cysS	BURPS1106A_2596	-	cysteinyl-tRNA synthetase
2565	 71.78	0	2563360..2564082	+	240	126453018	-	BURPS1106A_2597	-	TPR repeat-containing protein
2566	 64.58	0	2564139..2564714	+	191	126453901	-	BURPS1106A_2598	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2567	 59.96	-1	2564795..2565286	+	163	126452469	ppiB	BURPS1106A_2599	-	peptidyl-prolyl cis-trans isomerase B
2568	 69.12	0	2565338..2566111	+	257	126453331	lpxH	BURPS1106A_2600	-	UDP-2,3-diacylglucosamine hydrolase
2569	 70.26	0	2566180..2566374	-	64	126454157	-	BURPS1106A_2601	-	hypothetical protein
2570	 70.99	0	2566447..2567232	-	261	126455042	cysE	BURPS1106A_2602	-	serine O-acetyltransferase
2571	 62.96	0	2567134..2567322	+	62	126451881	-	BURPS1106A_2603	-	hypothetical protein
2572	 70.94	0	2567423..2568358	-	311	126454106	-	BURPS1106A_2604	-	RNA methyltransferase
2573	 65.05	0	2568659..2569462	+	267	126453367	-	BURPS1106A_2605	-	inositol monophosphatase family protein
2574	 57.88	-1	2569742..2570014	-	90	126454919	-	BURPS1106A_2606	-	hypothetical protein
2575	 61.11	-1	2570198..2570377	-	59	126453600	-	BURPS1106A_2607	-	hypothetical protein
2576	 62.36	0	2570687..2571847	+	386	126453150	-	BURPS1106A_2608	-	ISBma1, transposase
2577	 54.55	-2	2571863..2571994	-	43	126451826	-	BURPS1106A_2609	-	hypothetical protein
2578	 38.21	-2	2572127..2572249	+	40	126453252	-	BURPS1106A_2610	-	hypothetical protein
2579	 63.93	0	2572339..2572557	+	72	126452330	-	BURPS1106A_2611	-	hypothetical protein
2580	 68.23	0	2572526..2575345	+	939	126454533	mutS	BURPS1106A_2612	-	DNA mismatch repair protein
2581	 68.67	0	2575332..2576630	+	432	126451922	-	BURPS1106A_2614	-	hypothetical protein
2582	 58.61	-1	2576610..2577155	-	181	126453454	-	BURPS1106A_2613	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2583	 65.99	0	2577224..2578411	+	395	126455075	-	BURPS1106A_2615	-	cupin domain-containing protein
2584	 70.51	0	2578734..2578889	-	51	126454144	-	BURPS1106A_2616	-	hypothetical protein
2585	 70.27	0	2579138..2579914	-	258	126453263	-	BURPS1106A_2617	-	metallo-beta-lactamase family protein
2586	 68.15	0	2579919..2581061	-	380	126454691	-	BURPS1106A_2618	-	putative lipoprotein
2587	 66.45	0	2581172..2582074	-	300	126453555	dapA	BURPS1106A_2619	-	dihydrodipicolinate synthase
2588	 73.95	+1	2582119..2582736	-	205	126452855	-	BURPS1106A_2620	-	hypothetical protein
2589	 65.92	0	2582733..2583935	-	400	126451704	trpS	BURPS1106A_2621	-	tryptophanyl-tRNA synthetase
2590	 66.82	0	2583944..2584609	-	221	126454528	-	BURPS1106A_2622	-	M50 family peptidase
2591	 69.52	0	2584708..2585337	-	209	126453661	-	BURPS1106A_2623	-	Sua5/YciO/YrdC/YwlC family protein
2592	 69.92	0	2585402..2586232	-	276	126455438	-	BURPS1106A_2624	-	putative phosphoesterase
2593	 70.71	0	2586472..2587362	-	296	126451588	-	BURPS1106A_2625	-	alpha/beta fold family hydrolase
2594	 72.16	0	2587517..2588335	-	272	126452710	-	BURPS1106A_2626	-	hypothetical protein
2595	 65.71	0	2588545..2589069	+	174	126452545	-	BURPS1106A_2627	-	hexapeptide repeat-containing transferase
2596	 66.77	0	2589108..2590058	+	316	126454324	hsp33	BURPS1106A_2628	-	chaperonin, 33 kDa
2597	 71.55	0	2590142..2590489	+	115	126455271	-	BURPS1106A_2629	-	putative lipoprotein
2598	 68.29	0	2590712..2591143	-	143	126452195	ftsB	BURPS1106A_2630	-	cell division protein FtsB
2599	 64.88	0	2591235..2592518	-	427	126453285	eno	BURPS1106A_2631	-	phosphopyruvate hydratase
2600	 66.90	0	2592622..2593476	-	284	126453670	kdsA	BURPS1106A_2632	-	2-dehydro-3-deoxyphosphooctonate aldolase
2601	 64.45	0	2593473..2595185	-	570	126454854	pyrG	BURPS1106A_2633	-	CTP synthetase
2602	 78.40	+2	2595182..2595394	-	70	126453364	-	BURPS1106A_2634	-	hypothetical protein
2603	 69.32	0	2595391..2596218	-	275	126453958	-	BURPS1106A_2635	-	hypothetical protein
2604	 76.16	+1	2596255..2598825	-	856	126451566	-	BURPS1106A_2636	-	DNA internalization-related competence protein ComEC/Rec2
2605	 70.60	0	2598836..2599624	-	262	126452641	-	BURPS1106A_2637	-	putative deoxyribonuclease yjjV
2606	 69.60	0	2599629..2600378	-	249	126452839	lolD	BURPS1106A_2638	-	lipoprotein releasing system, ATP-binding protein
2607	 66.83	0	2600371..2601624	-	417	126453503	-	BURPS1106A_2639	-	LolC/E family lipoprotein releasing system, transmembrane protein
2608	 72.79	0	2602057..2602203	-	48	126455023	-	BURPS1106A_2640	-	hypothetical protein
2609	 73.82	+1	2602192..2603268	+	358	126452154	-	BURPS1106A_2641	-	hypothetical protein
2610	 71.80	0	2603284..2604978	+	564	126452335	recJ	BURPS1106A_2642	-	single-stranded-DNA-specific exonuclease RecJ
2611	 62.42	0	2605445..2605609	-	54	126452985	-	BURPS1106A_2643	-	hypothetical protein
2612	 64.12	0	2605697..2606443	+	248	126455346	-	BURPS1106A_2644	-	peptide chain release factor 2, programmed
2613	 66.01	0	2606537..2608063	+	508	126453655	lysS	BURPS1106A_2645	-	lysyl-tRNA synthetase
2614	 72.17	0	2608114..2608440	+	108	126453065	-	BURPS1106A_2646	-	hypothetical protein
2615	 72.04	0	2608495..2609220	+	241	126452238	-	BURPS1106A_2647	-	surface antigen family protein
2616	 72.38	0	2609336..2609650	-	104	126453936	-	BURPS1106A_2648	-	hypothetical protein
2617	 60.00	-1	2609647..2609856	-	69	126453982	-	BURPS1106A_2649	-	hypothetical protein
2618	 60.82	-1	2609875..2610216	-	113	126451680	fdx	BURPS1106A_2650	-	2Fe-2S ferredoxin
2619	 70.20	0	2610309..2612177	-	622	126454821	hscA	BURPS1106A_2651	-	chaperone protein HscA
2620	 67.99	0	2612235..2612762	-	175	126454370	hscB	BURPS1106A_2652	-	co-chaperone HscB
2621	 62.04	-1	2612875..2613198	-	107	126452485	iscA	BURPS1106A_2653	-	iron-sulfur cluster assembly protein IscA
2622	 65.20	0	2613281..2613688	-	135	126454599	iscU	BURPS1106A_2654	-	scaffold protein
2623	 64.79	0	2613754..2614977	-	407	126452227	iscS	BURPS1106A_2655	-	cysteine desulfurase
2624	 65.56	0	2615046..2615585	-	179	126453431	iscR	BURPS1106A_2656	-	iron-sulfur cluster assembly transcription factor IscR
2625	 69.70	0	2615687..2616181	-	164	126454074	ptpA	BURPS1106A_2657	-	low molecular weight protein-tyrosine-phosphatase
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.