IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2467	 62.08	-1	2445412..2446152	-	246	126454332	rpsB	BURPS1106A_2493	-	30S ribosomal protein S2
2468	 75.82	+1	2446436..2446588	+	50	126453102	-	BURPS1106A_2494	-	hypothetical protein
2469	 64.95	0	2446632..2447447	+	271	126454210	map	BURPS1106A_2495	-	methionine aminopeptidase
2470	 68.41	0	2447618..2450194	+	858	126455366	glnD	BURPS1106A_2496	-	PII uridylyl-transferase
2471	 74.71	+1	2450209..2451924	+	571	126451482	-	BURPS1106A_2497	-	RNA pseudouridine synthase family protein
2472	 66.85	0	2452119..2452652	-	177	126452569	def-2	BURPS1106A_2498	-	peptide deformylase
2473	 68.40	0	2452649..2454724	-	691	126453906	ligA	BURPS1106A_2499	-	DNA ligase, NAD-dependent
2474	 74.24	+1	2454763..2455092	-	109	126452604	-	BURPS1106A_2500	-	hypothetical protein
2475	 72.25	0	2455161..2456432	-	423	126452787	-	BURPS1106A_2501	-	hypothetical protein
2476	 69.91	0	2456514..2460026	-	1170	126451882	smc	BURPS1106A_2502	-	chromosome segregation protein SMC
2477	 72.05	0	2460175..2461122	-	315	126454972	-	BURPS1106A_2503	-	integral membrane protein
2478	 70.32	0	2461387..2462619	+	410	126454437	-	BURPS1106A_2504	-	hypothetical protein
2479	 65.82	0	2462676..2463503	+	275	126454271	dapD	BURPS1106A_2505	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
2480	 69.33	0	2463503..2463877	+	124	126453365	-	BURPS1106A_2506	-	ArsC family protein
2481	 69.12	0	2463951..2465090	+	379	126454487	dapE	BURPS1106A_2507	-	succinyl-diaminopimelate desuccinylase
2482	 69.48	0	2465104..2466027	+	307	126453622	-	BURPS1106A_2508	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2483	 68.82	0	2466270..2467709	+	479	126453036	cls	BURPS1106A_2509	-	cardiolipin synthetase
2484	 61.25	-1	2467813..2468292	-	159	126453862	bsaA	BURPS1106A_2510	-	glutathione peroxidase
2485	 68.52	0	2468438..2470378	+	646	126454765	-	BURPS1106A_2511	-	ABC transporter, ATP-binding protein
2486	 68.52	0	2470466..2470735	-	89	126453282	-	BURPS1106A_2512	-	hypothetical protein
2487	 68.48	0	2470896..2472272	-	458	126454994	radA	BURPS1106A_2513	-	DNA repair protein RadA
2488	 70.68	0	2472283..2473353	-	356	126454140	alr	BURPS1106A_2514	-	alanine racemase
2489	 65.56	0	2473517..2474872	+	451	126453215	-	BURPS1106A_2515	-	hypothetical protein
2490	 72.10	0	2474983..2475792	+	269	126452411	thiD	BURPS1106A_2516	-	phosphomethylpyrimidine kinase
2491	 71.69	0	2476036..2476254	-	72	126454538	-	BURPS1106A_2517	-	hypothetical protein
2492	 73.39	+1	2476218..2477198	-	326	126453736	-	BURPS1106A_2518	-	hypothetical protein
2493	 74.63	+1	2477195..2478562	-	455	126454213	-	BURPS1106A_2519	-	uracil-DNA glycosylase
2494	 66.67	0	2478549..2479046	-	165	126455441	rimI	BURPS1106A_2520	-	ribosomal-protein-alanine acetyltransferase
2495	 77.20	+1	2479043..2479792	-	249	126451539	-	BURPS1106A_2521	-	glycoprotease family protein
2496	 62.22	-1	2479974..2480243	+	89	126452636	-	BURPS1106A_2522	-	acyl-CoA-binding protein
2497	 72.24	0	2480689..2482230	+	513	126453899	-	BURPS1106A_2523	-	DEAD/DEAH box helicase
2498	 64.91	0	2482622..2483929	+	435	126453955	aceA	BURPS1106A_2524	-	isocitrate lyase
2499	 66.90	0	2484189..2484623	-	144	126455163	-	BURPS1106A_2525	-	universal stress family protein
2500	 70.10	0	2484903..2485805	-	300	126452276	-	BURPS1106A_2526	-	LysR family transcriptional regulator
2501	 73.26	+1	2485944..2486747	+	267	126453426	dehII	BURPS1106A_2527	-	haloacid dehalogenase, type II
2502	 65.73	0	2486800..2488392	+	530	126453591	aceB	BURPS1106A_2528	-	malate synthase
2503	 70.00	0	2488754..2488873	-	39	126452715	-	BURPS1106A_2529	-	hypothetical protein
2504	 68.97	0	2489037..2489471	-	144	126452507	-	BURPS1106A_2530	-	hypothetical protein
2505	 71.89	0	2489492..2489989	-	165	126451685	rraA	BURPS1106A_2531	-	ribonuclease activity regulator protein RraA
2506	 72.11	0	2490119..2490982	+	287	126454131	-	BURPS1106A_2532	-	AraC family transcriptional regulator
2507	 63.69	0	2490979..2491146	+	55	126453382	-	BURPS1106A_2533	-	hypothetical protein
2508	 64.53	0	2491586..2492053	-	155	126454860	-	BURPS1106A_2534	-	acetyltransferase
2509	 62.67	0	2492052..2492201	+	49	126453951	-	BURPS1106A_2535	-	hypothetical protein
2510	 67.00	0	2493139..2494653	-	504	126451684	gltX	BURPS1106A_2541	-	glutamyl-tRNA synthetase
2511	 71.26	0	2495005..2496048	+	347	126455403	-	BURPS1106A_2542	-	patatin family phospholipase
2512	 65.14	0	2496221..2496877	-	218	126452477	-	BURPS1106A_2543	-	NlpC/P60 domain-containing protein
2513	 70.12	0	2497061..2498710	-	549	126452152	-	BURPS1106A_2544	-	peptide/opine/nickel uptake ABC transporter ATP-binding protein
2514	 67.76	0	2498707..2499804	-	365	126455223	-	BURPS1106A_2545	-	ABC transporter, permease protein
2515	 65.42	0	2499806..2500846	-	346	126454916	-	BURPS1106A_2546	-	ABC transporter, permease protein
2516	 70.51	0	2501035..2502987	-	650	126453009	-	BURPS1106A_2547	-	ABC transporter, periplasmic substrate-binding protein
2517	 66.04	0	2503108..2503899	+	263	126452540	fabI	BURPS1106A_2548	-	enoyl-(acyl carrier protein) reductase
2518	 72.60	0	2504152..2504505	-	117	126451656	-	BURPS1106A_2549	-	hypothetical protein
2519	 66.67	0	2504794..2504910	-	38	126452482	-	BURPS1106A_2550	-	hypothetical protein
2520	 68.25	0	2505214..2507547	-	777	126451671	-	BURPS1106A_2551	-	molybdopterin oxidoreductase
2521	 67.05	0	2507605..2507865	+	86	126455109	-	BURPS1106A_2552	-	hypothetical protein
2522	 63.82	0	2508040..2508813	-	257	126451722	fpr	BURPS1106A_2553	-	ferredoxin--NADP reductase
2523	 69.83	0	2508699..2509742	-	347	126451739	-	BURPS1106A_2554	-	hypothetical protein
2524	 64.90	0	2509915..2510253	-	112	126454614	-	BURPS1106A_2555	-	putative ferredoxin
2525	 65.25	0	2510384..2511298	+	304	126453521	-	BURPS1106A_2556	-	TetR family transcriptional regulator
2526	 69.60	0	2511372..2512190	-	272	126452369	map	BURPS1106A_2557	-	methionine aminopeptidase, type I
2527	 64.89	0	2512190..2512414	-	74	126452198	-	BURPS1106A_2558	-	hypothetical protein
2528	 69.12	0	2512405..2512689	-	94	126455329	-	BURPS1106A_2559	-	pseudouridine synthase, Rsu
2529	 70.87	0	2512698..2515412	-	904	126454134	-	BURPS1106A_2560	-	argininosuccinate lyase
2530	 68.54	0	2515492..2516556	-	354	126452722	-	BURPS1106A_2561	-	cysteine synthase/cystathionine beta-synthase family protein
2531	 68.75	0	2516561..2517760	-	399	126452895	-	BURPS1106A_2562	-	GHMP kinase domain-containing protein
2532	 68.63	0	2517783..2518748	-	321	126452905	cysD	BURPS1106A_2563	-	sulfate adenylyltransferase subunit 2
2533	 66.79	0	2518904..2519722	-	272	126453005	-	BURPS1106A_2564	-	glycosyl transferase, group 2 family protein
2534	 67.31	0	2519813..2520907	-	364	126452158	serC-2	BURPS1106A_2565	-	phosphoserine aminotransferase
2535	 65.78	0	2520948..2522075	-	375	126454148	-	BURPS1106A_2566	-	acyltransferase family protein
2536	 73.26	+1	2522127..2523278	-	383	126453216	-	BURPS1106A_2567	-	hypothetical protein
2537	 71.93	0	2523275..2524186	-	303	126452363	-	BURPS1106A_2568	-	transketolase domain-containing protein
2538	 71.39	0	2524183..2525007	-	274	126454534	-	BURPS1106A_2569	-	transketolase domain-containing protein
2539	 74.01	+1	2525027..2526115	-	362	126454284	-	BURPS1106A_2570	-	hypothetical protein
2540	 66.28	0	2526109..2526888	-	259	126453378	-	BURPS1106A_2571	-	hypothetical protein
2541	 67.61	0	2526908..2527756	-	282	126451545	-	BURPS1106A_2572	-	hypothetical protein
2542	 69.40	0	2527826..2528704	-	292	126451902	-	BURPS1106A_2573	-	dioxygenase, TauD/TfdA
2543	 68.17	0	2528709..2529506	-	265	126453344	-	BURPS1106A_2574	-	hypothetical protein
2544	 72.10	0	2529503..2538442	-	2979	126453674	-	BURPS1106A_2575	-	non-ribosomal peptide synthase
2545	 72.38	0	2538526..2539926	-	466	126455089	-	BURPS1106A_2576	-	hypothetical protein
2546	 72.09	0	2540160..2540288	-	42	126452187	-	BURPS1106A_2577	-	hypothetical protein
2547	 72.20	0	2540285..2541586	-	433	126455052	-	BURPS1106A_2578	-	major facilitator family transporter
2548	 73.08	+1	2541654..2543492	-	612	126452346	-	BURPS1106A_2579	-	amino acid adenylation domain-containing protein
2549	 73.06	+1	2543543..2545012	-	489	126451714	cysC	BURPS1106A_2580	-	adenylylsulfate kinase
2550	 68.49	0	2545597..2545815	+	72	126454105	-	BURPS1106A_2581	-	hypothetical protein
2551	 73.66	+1	2546148..2546390	+	80	126454297	-	BURPS1106A_2582	-	hypothetical protein
2552	 70.79	0	2546484..2547719	+	411	126451497	-	BURPS1106A_2583	-	RND family efflux transporter MFP subunit
2553	 67.68	0	2547716..2550862	+	1048	126454028	-	BURPS1106A_2584	-	AcrB/AcrD/AcrF family protein
2554	 70.68	0	2550940..2552160	+	406	126455190	-	BURPS1106A_2585	-	hypothetical protein
2555	 68.69	0	2552199..2554031	-	610	126454868	-	BURPS1106A_2586	-	GDSL-like lipase/acylhydrolase domain/outer membrane autotransporter barrel domain-containing protein
2556	 70.87	0	2554225..2555271	-	348	126451949	-	BURPS1106A_2587	-	hypothetical protein
2557	 53.09	-2	2555273..2555434	-	53	126452516	-	BURPS1106A_2588	-	hypothetical protein
2558	 50.79	-2	2555610..2555735	-	41	126453677	-	BURPS1106A_2589	-	hypothetical protein
2559	 62.83	0	2556557..2557807	-	416	126451837	-	BURPS1106A_2591	-	aspartate kinase
2560	 63.79	0	2557790..2558032	+	80	126454573	-	BURPS1106A_2592	-	hypothetical protein
2561	 73.09	+1	2558148..2559626	-	492	126454111	tilS	BURPS1106A_2593	-	tRNA(Ile)-lysidine synthetase
2562	 65.33	0	2559670..2560641	-	323	126454581	accA	BURPS1106A_2594	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2563	 69.22	0	2560745..2561683	-	312	126455439	-	BURPS1106A_2595	-	base excision DNA repair protein
2564	 65.31	0	2561731..2563128	-	465	126452065	cysS	BURPS1106A_2596	-	cysteinyl-tRNA synthetase
2565	 71.78	0	2563360..2564082	+	240	126453018	-	BURPS1106A_2597	-	TPR repeat-containing protein
2566	 64.58	0	2564139..2564714	+	191	126453901	-	BURPS1106A_2598	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.