IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2376	 71.59	0	2364655..2365365	-	236	126454537	ispD	BURPS1106A_2401	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2377	 69.16	0	2365386..2368955	+	1189	126453184	mfd	BURPS1106A_2402	-	transcription-repair coupling factor
2378	 69.80	0	2368973..2369482	+	169	126451846	-	BURPS1106A_2403	-	hypothetical protein
2379	 68.06	0	2369510..2369797	-	95	126453992	-	BURPS1106A_2404	-	hypothetical protein
2380	 68.23	0	2370099..2371316	+	405	126453134	argE	BURPS1106A_2405	-	acetylornithine deacetylase
2381	 70.16	0	2371378..2372409	+	343	126451591	-	BURPS1106A_2406	-	serine/threonine dehydratase family protein
2382	 66.27	0	2372602..2372853	-	83	126454455	-	BURPS1106A_2407	-	hypothetical protein
2383	 71.71	0	2372869..2373324	+	151	126454287	-	BURPS1106A_2408	-	hypothetical protein
2384	 70.94	0	2373344..2373460	-	38	126451571	-	BURPS1106A_2409	-	hypothetical protein
2385	 77.22	+1	2373615..2373851	-	78	126455348	-	BURPS1106A_2410	-	hypothetical protein
2386	 67.90	0	2373876..2376398	-	840	126453856	-	BURPS1106A_2411	-	1A family penicillin-binding protein
2387	 60.88	-1	2376351..2376644	+	97	126452721	-	BURPS1106A_2412	-	hypothetical protein
2388	 67.11	0	2376914..2377594	+	226	126453120	-	BURPS1106A_2413	-	PspA/IM30 family protein
2389	 72.18	0	2377709..2378923	+	404	126452003	-	BURPS1106A_2414	-	TPR repeat-containing protein
2390	 58.56	-1	2379107..2379538	+	143	126453168	mscL	BURPS1106A_2415	-	large conductance mechanosensitive channel protein
2391	 69.59	0	2379904..2380347	+	147	126452058	-	BURPS1106A_2416	-	hypothetical protein
2392	 73.87	+1	2380528..2381415	-	295	126454478	-	BURPS1106A_2417	-	hypothetical protein
2393	 58.10	-1	2381559..2381768	+	69	126453133	-	BURPS1106A_2419	-	hypothetical protein
2394	 70.67	0	2381734..2381958	-	74	126454288	-	BURPS1106A_2418	-	hypothetical protein
2395	 69.92	0	2382062..2382184	-	40	126452336	-	BURPS1106A_2420	-	hypothetical protein
2396	 64.73	0	2382508..2383437	+	309	126454997	-	BURPS1106A_2421	-	LysR family transcriptional regulator
2397	 70.19	0	2383689..2385191	-	500	126454025	-	BURPS1106A_2422	-	hydroxydechloroatrazine ethylaminohydrolase
2398	 79.10	+2	2385313..2385489	-	58	126453517	-	BURPS1106A_2423	-	hypothetical protein
2399	 57.89	-1	2385488..2385601	+	37	126452732	-	BURPS1106A_2424	-	hypothetical protein
2400	 68.36	0	2385685..2386038	+	117	126453321	uraH	BURPS1106A_2425	-	hydroxyisourate hydrolase
2401	 65.84	0	2386088..2387290	+	400	126452422	-	BURPS1106A_2426	-	hypothetical protein
2402	 62.18	-1	2387702..2387857	-	51	126454125	-	BURPS1106A_2427	-	hypothetical protein
2403	 74.42	+1	2387899..2388027	-	42	126453305	-	BURPS1106A_2428	-	hypothetical protein
2404	 65.50	0	2388155..2388667	-	170	126453721	allA	BURPS1106A_2429	-	ureidoglycolate hydrolase
2405	 67.06	0	2388664..2389677	-	337	161986644	-	BURPS1106A_2430	-	allantoicase
2406	 68.19	0	2389906..2390430	-	174	126454520	-	BURPS1106A_2431	-	hypothetical protein
2407	 67.61	0	2390427..2391380	-	317	126454389	-	BURPS1106A_2432	-	polysaccharide deacetylase
2408	 72.73	0	2391526..2392482	-	318	126453356	hyuE	BURPS1106A_2433	-	hydantoin racemase
2409	 65.10	0	2392493..2394025	-	510	126452220	-	BURPS1106A_2434	-	NCS1 nucleoside transporter family protein
2410	 68.10	0	2394138..2394833	-	231	126452872	-	BURPS1106A_2435	-	GntR family transcriptional regulator
2411	 67.52	0	2395157..2396098	-	313	126451817	ldcA	BURPS1106A_2436	-	L,D-carboxypeptidase A
2412	 74.87	+1	2396154..2396750	-	198	126454685	-	BURPS1106A_2437	-	cytidine/deoxycytidylate deaminase family protein
2413	 68.91	0	2396747..2397148	-	133	126453557	-	BURPS1106A_2438	-	hypothetical protein
2414	 71.15	0	2397473..2397628	-	51	126454888	-	BURPS1106A_2439	-	hypothetical protein
2415	 72.69	0	2397630..2397878	-	82	126451968	-	BURPS1106A_2440	-	hypothetical protein
2416	 66.07	0	2397950..2398456	-	168	126453079	-	BURPS1106A_2441	-	hypothetical protein
2417	 71.25	0	2398824..2400044	+	406	126454280	-	BURPS1106A_2442	-	major facilitator family transporter
2418	 63.02	0	2400041..2400232	+	63	126454289	-	BURPS1106A_2443	-	hypothetical protein
2419	 70.51	0	2400407..2400562	-	51	126451480	-	BURPS1106A_2444	-	hypothetical protein
2420	 62.46	0	2401716..2402951	-	411	126452592	-	BURPS1106A_2445	-	hypothetical protein
2421	 58.79	-1	2402954..2405290	-	778	126453762	-	BURPS1106A_2446	-	hypothetical protein
2422	 59.45	-1	2405764..2406165	-	133	126453792	-	BURPS1106A_2447	-	hypothetical protein
2423	 60.32	-1	2406277..2406402	+	41	126454927	-	BURPS1106A_2448	-	hypothetical protein
2424	 61.11	-1	2407165..2407290	-	41	126454693	-	BURPS1106A_2449	-	hypothetical protein
2425	 54.32	-2	2407877..2408038	-	53	126453568	-	BURPS1106A_2450	-	hypothetical protein
2426	 56.92	-1	2408883..2409323	+	146	126453737	-	BURPS1106A_2451	-	S-adenosylhomocysteine hydrolase
2427	 56.63	-2	2409301..2410227	+	308	126452581	-	BURPS1106A_2452	-	hypothetical protein
2428	 60.00	-1	2410243..2410422	+	59	126452145	-	BURPS1106A_2453	-	hypothetical protein
2429	 66.36	0	2411134..2412753	-	539	126455031	guaA	BURPS1106A_2454	-	bifunctional GMP synthase/glutamine amidotransferase protein
2430	 63.33	0	2412735..2412884	-	49	126451686	-	BURPS1106A_2455	-	hypothetical protein
2431	 75.23	+1	2412881..2413534	-	217	126452304	-	BURPS1106A_2456	-	hypothetical protein
2432	 67.28	0	2413541..2415001	-	486	126453878	guaB	BURPS1106A_2457	-	inositol-5-monophosphate dehydrogenase
2433	 72.65	0	2415053..2415403	-	116	126452461	-	BURPS1106A_2458	-	hypothetical protein
2434	 69.80	0	2415418..2416182	-	254	126452092	-	BURPS1106A_2459	-	hypothetical protein
2435	 70.91	0	2417571..2418254	+	227	126454839	-	BURPS1106A_2461	-	hypothetical protein
2436	 69.63	0	2418417..2418551	+	44	126455008	-	BURPS1106A_2462	-	hypothetical protein
2437	 69.66	0	2418589..2419557	+	322	126454367	-	BURPS1106A_2463	-	integral membrane protein
2438	 70.06	0	2419702..2420025	-	107	126451471	-	BURPS1106A_2464	-	hypothetical protein
2439	 60.73	-1	2420031..2420468	-	145	126452126	-	BURPS1106A_2465	-	hypothetical protein
2440	 50.33	-2	2420433..2420585	+	50	126453234	-	BURPS1106A_2466	-	hypothetical protein
2441	 60.63	-1	2420566..2421012	+	148	126453935	smpB	BURPS1106A_2467	-	SsrA-binding protein
2442	 64.77	0	2421189..2422136	-	315	126454557	-	BURPS1106A_2468	-	SPFH domain-containing protein/band 7 family protein
2443	 71.49	0	2422216..2422650	-	144	126454928	-	BURPS1106A_2469	-	NfeD family protein
2444	 65.08	0	2422778..2425177	-	799	126453619	ppsA	BURPS1106A_2470	-	phosphoenolpyruvate synthase
2445	 59.83	-1	2425186..2425419	-	77	126452466	-	BURPS1106A_2471	-	hypothetical protein
2446	 70.75	0	2425899..2426951	-	350	126455372	-	BURPS1106A_2472	-	putative phytochelatin synthase
2447	 70.69	0	2426984..2428870	-	628	126454247	-	BURPS1106A_2473	-	serine protease
2448	 72.41	0	2428882..2429055	-	57	126453099	-	BURPS1106A_2474	-	hypothetical protein
2449	 71.54	0	2429274..2429396	-	40	126454346	-	BURPS1106A_2475	-	hypothetical protein
2450	 62.62	0	2429420..2430235	+	271	126452946	-	BURPS1106A_2476	-	hypothetical protein
2451	 71.36	0	2430437..2431225	-	262	126452067	-	BURPS1106A_2477	-	RNA methyltransferase
2452	 69.46	0	2431222..2431866	-	214	126454836	rnhB	BURPS1106A_2478	-	ribonuclease HII
2453	 69.41	0	2431866..2433032	-	388	126454896	lpxB	BURPS1106A_2479	-	lipid-A-disaccharide synthase
2454	 66.16	0	2433036..2433824	-	262	126453884	lpxA	BURPS1106A_2480	-	UDP-N-acetylglucosamine acyltransferase
2455	 62.18	-1	2433880..2434347	-	155	126454169	fabZ	BURPS1106A_2481	-	(3R)-hydroxymyristoyl-ACP dehydratase
2456	 70.72	0	2434493..2435578	-	361	126453222	lpxD	BURPS1106A_2482	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2457	 66.86	0	2435595..2436101	-	168	126453885	-	BURPS1106A_2483	-	outer membrane protein
2458	 63.94	0	2436166..2438472	-	768	126452465	-	BURPS1106A_2484	-	OMP85 family outer membrane protein
2459	 58.62	-1	2438398..2438571	+	57	126452403	-	BURPS1106A_2486	-	hypothetical protein
2460	 68.97	0	2438540..2439931	-	463	126451617	-	BURPS1106A_2485	-	membrane-associated zinc metalloprotease, putative
2461	 70.84	0	2439949..2441145	-	398	126454965	dxr	BURPS1106A_2487	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2462	 72.26	0	2441160..2441981	-	273	126454204	cdsA	BURPS1106A_2488	-	phosphatidate cytidylyltransferase
2463	 68.07	0	2441975..2442757	-	260	126455056	uppS	BURPS1106A_2489	-	undecaprenyl diphosphate synthase
2464	 63.10	0	2442805..2443365	-	186	126454912	frr	BURPS1106A_2490	-	ribosome recycling factor
2465	 66.95	0	2443456..2444169	-	237	126451809	pyrH	BURPS1106A_2491	-	uridylate kinase
2466	 65.19	0	2444348..2445229	-	293	126452685	tsf	BURPS1106A_2492	-	elongation factor Ts
2467	 62.08	-1	2445412..2446152	-	246	126454332	rpsB	BURPS1106A_2493	-	30S ribosomal protein S2
2468	 75.82	+1	2446436..2446588	+	50	126453102	-	BURPS1106A_2494	-	hypothetical protein
2469	 64.95	0	2446632..2447447	+	271	126454210	map	BURPS1106A_2495	-	methionine aminopeptidase
2470	 68.41	0	2447618..2450194	+	858	126455366	glnD	BURPS1106A_2496	-	PII uridylyl-transferase
2471	 74.71	+1	2450209..2451924	+	571	126451482	-	BURPS1106A_2497	-	RNA pseudouridine synthase family protein
2472	 66.85	0	2452119..2452652	-	177	126452569	def-2	BURPS1106A_2498	-	peptide deformylase
2473	 68.40	0	2452649..2454724	-	691	126453906	ligA	BURPS1106A_2499	-	DNA ligase, NAD-dependent
2474	 74.24	+1	2454763..2455092	-	109	126452604	-	BURPS1106A_2500	-	hypothetical protein
2475	 72.25	0	2455161..2456432	-	423	126452787	-	BURPS1106A_2501	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.